tools.yaml.lock

install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: sra_tools
  owner: iuc
  revisions:
  - 653e89d73fc4
  - 69ebb7f46e45
  - 83c7d564b128
  - e08a7ad4378b
  tool_panel_section_label: Get Data
- name: ega_download_client
  owner: iuc
  revisions:
  - 1162bfd9f782
  - caf213d51d6c
  tool_panel_section_label: Get Data
- name: fastqc
  owner: devteam
  revisions:
  - e7b2202befea
  tool_panel_section_label: FASTQ Quality Control
- name: qualimap_bamqc
  owner: iuc
  revisions:
  - 19ece8afbaab
  tool_panel_section_label: FASTQ Quality Control
- name: qualimap_counts
  owner: iuc
  revisions:
  - d696cf0a9622
  tool_panel_section_label: FASTQ Quality Control
- name: qualimap_multi_bamqc
  owner: iuc
  revisions:
  - e38af83df163
  tool_panel_section_label: FASTQ Quality Control
- name: prinseq
  owner: iuc
  revisions:
  - 02befcb391f5
  - 1ee282794de3
  - 654b3a274ed5
  tool_panel_section_label: FASTQ Quality Control
- name: trim_galore
  owner: bgruening
  revisions:
  - 084bbd8ba7b8
  tool_panel_section_label: FASTA/FASTQ
- name: trimmomatic
  owner: pjbriggs
  revisions:
  - d94aff5ee623
  tool_panel_section_label: FASTA/FASTQ
- name: multiqc
  owner: iuc
  revisions:
  - 75c93c70d094
  - 9a913cdee30e
  - f7985e0479b9
  tool_panel_section_label: FASTQ Quality Control
- name: megahit
  owner: iuc
  revisions:
  - 14ddfc8ffb93
  - 7518ee87b53d
  - de387b2b2803
  tool_panel_section_label: Assembly
- name: metaspades
  owner: nml
  revisions:
  - 05c394313b1c
  tool_panel_section_label: Assembly
- name: quast
  owner: iuc
  revisions:
  - 342a1d1fed7b
  - 675488238c96
  - 7594365c546b
  - ebb0dcdb621a
  tool_panel_section_label: Assembly
- name: taxonomy_krona_chart
  owner: crs4
  revisions:
  - e9005d1f3cfd
  tool_panel_section_label: Graph/Display Data
- name: flye
  owner: bgruening
  revisions:
  - de24438c9988
  tool_panel_section_label: Assembly
- name: staramr
  owner: nml
  revisions:
  - 2fd4d4c9c5c2
  tool_panel_section_label: Metagenomic Analysis
- name: tbl2gff3
  owner: iuc
  revisions:
  - 4a7f4b0cc0a3
  tool_panel_section_label: Annotation
- name: bedtools
  owner: iuc
  revisions:
  - 07e8b80f278c
  - 0a5c785ac6db
  - 3e38c9b3214f
  - 7ab85ac5f64b
  - a68aa6c1204a
  - ce3c7f062223
  - fe5b4cb8356c
  tool_panel_section_label: BED
- name: text_processing
  owner: bgruening
  revisions:
  - ddf54b12c295
  tool_panel_section_label: Text Manipulation
- name: column_maker
  owner: devteam
  revisions:
  - 9cd341095afd
  tool_panel_section_label: Text Manipulation
- name: split_file_on_column
  owner: bgruening
  revisions:
  - b60f2452580e
  tool_panel_section_label: Text Manipulation
- name: circos
  owner: iuc
  revisions:
  - 290a11559985
  - 31a35811dda6
  - 7f13dc906cb9
  - df7356989ac1
  tool_panel_section_label: Graph/Display Data
- name: jbrowse
  owner: iuc
  revisions:
  - 4542035c1075
  - 6cd09d7b5f37
  - 87dc4ce42281
  - a6e57ff585c0
  tool_panel_section_label: Graph/Display Data
- name: fasta_compute_length
  owner: devteam
  revisions:
  - 7d37cfda8e00
  tool_panel_section_label: FASTA/FASTQ
- name: sam_to_bam
  owner: devteam
  revisions:
  - cf1ffd88f895
  tool_panel_section_label: SAM/BAM
- name: bam_to_sam
  owner: devteam
  revisions:
  - 88eedb4abea0
  tool_panel_section_label: SAM/BAM
- name: bamtools
  owner: devteam
  revisions:
  - 4d343c1f606b
  tool_panel_section_label: SAM/BAM
- name: vcfanno
  owner: iuc
  revisions:
  - cdcaa40e5e45
  - fb20fa735dfe
  tool_panel_section_label: Annotation
- name: hisat2
  owner: iuc
  revisions:
  - 6c19daec423d
  tool_panel_section_label: RNA Analysis
- name: column_remove_by_header
  owner: iuc
  revisions:
  - 372967836e98
  tool_panel_section_label: Text Manipulation
- name: bwa_mem2
  owner: iuc
  revisions:
  - b4a22d90cce9
  tool_panel_section_label: Mapping
- name: varscan_somatic
  owner: iuc
  revisions:
  - cf8ffc79db67
  tool_panel_section_label: Variation
- name: lumpy_sv
  owner: iuc
  revisions:
  - 88b35d91a662
  tool_panel_section_label: Variation
- name: lumpy_prep
  owner: iuc
  revisions:
  - 80adce82354c
  tool_panel_section_label: Variation
- name: delly_call
  owner: iuc
  revisions:
  - 6f383714149d
  tool_panel_section_label: Variation
- name: delly_classify
  owner: iuc
  revisions:
  - d31211a43b19
  tool_panel_section_label: Variation
- name: delly_cnv
  owner: iuc
  revisions:
  - 56781a718729
  tool_panel_section_label: Variation
- name: delly_filter
  owner: iuc
  revisions:
  - d2590fe6793f
  tool_panel_section_label: Variation
- name: delly_lr
  owner: iuc
  revisions:
  - d30785dbe6b7
  tool_panel_section_label: Variation
- name: delly_merge
  owner: iuc
  revisions:
  - 1efb2b927957
  tool_panel_section_label: Variation
- name: delly_rd
  owner: iuc
  revisions:
  - 512c21434aad
  tool_panel_section_label: Variation
- name: varscan_mpileup
  owner: iuc
  revisions:
  - db94eadb92c1
  tool_panel_section_label: Variation
- name: vardict_java
  owner: iuc
  revisions:
  - d262577e04b0
  - e0734e88a104
  tool_panel_section_label: Variation
- name: happy
  owner: iuc
  revisions:
  - 728bd4d000b0
  tool_panel_section_label: Variation
- name: samtools_markdup
  owner: iuc
  revisions:
  - 8c440c3002bc
  tool_panel_section_label: SAM/BAM
- name: samtools_sort
  owner: devteam
  revisions:
  - 6c2c1836728b
  tool_panel_section_label: SAM/BAM
- name: bcftools_mpileup
  owner: iuc
  revisions:
  - a0c219ecb5e7
  - ce9396ddcb2b
  tool_panel_section_label: Variation
- name: star_fusion
  owner: iuc
  revisions:
  - 137942fac417
  tool_panel_section_label: RNA Analysis
- name: samtools_mpileup
  owner: devteam
  revisions:
  - 9da0311ab1dd
  tool_panel_section_label: Variation
- name: samtools_fixmate
  owner: iuc
  revisions:
  - 595ae1ba934a
  tool_panel_section_label: SAM/BAM
- name: ncbi_blast_plus
  owner: devteam
  revisions:
  - 5edc472ec434
  tool_panel_section_label: BLAST
- name: bcftools_norm
  owner: iuc
  revisions:
  - 481476814acc
  - 67e2bd1c4579
  tool_panel_section_label: Variation
- name: picard
  owner: devteam
  revisions:
  - 881d7645d1bf
  tool_panel_section_label: Picard
- name: sam_pileup
  owner: devteam
  revisions:
  - a3b4ad6858ff
  tool_panel_section_label: Variation
- name: bcftools_concat
  owner: iuc
  revisions:
  - 81426b3cf18b
  - fc47ffec447e
  tool_panel_section_label: Variation
- name: vcffilter
  owner: devteam
  revisions:
  - fa24bf0598f4
  tool_panel_section_label: Variation
- name: gatk4_mutect2
  owner: iuc
  revisions:
  - 53ce8be43212
  tool_panel_section_label: Variation
- name: fetch_vep_cache_data
  owner: davidvanzessen
  revisions:
  - de3516853bde
  tool_panel_section_label: Annotation
- name: snpeff
  owner: iuc
  revisions:
  - cfcf33df7fc0
  tool_panel_section_label: Annotation
- name: data_manager_gemini_database_downloader
  owner: iuc
  revisions:
  - 52b6a4d98009
  tool_panel_section_label: GEMINI
- name: gemini_actionable_mutations
  owner: iuc
  revisions:
  - 142d95ab942e
  tool_panel_section_label: GEMINI
- name: gemini_amend
  owner: iuc
  revisions:
  - be828b79bd4d
  tool_panel_section_label: GEMINI
- name: gemini_annotate
  owner: iuc
  revisions:
  - f2f3bc622a16
  tool_panel_section_label: GEMINI
- name: gemini_burden
  owner: iuc
  revisions:
  - df57188562f0
  tool_panel_section_label: GEMINI
- name: gemini_comp_hets
  owner: iuc
  revisions:
  - 62647e2637f6
  tool_panel_section_label: GEMINI
- name: gemini_db_info
  owner: iuc
  revisions:
  - 7d75673f4d6f
  tool_panel_section_label: GEMINI
- name: gemini_de_novo
  owner: iuc
  revisions:
  - 9db3e299b1c8
  tool_panel_section_label: GEMINI
- name: gemini_dump
  owner: iuc
  revisions:
  - 96a2d270bf0f
  tool_panel_section_label: GEMINI
- name: gemini_fusions
  owner: iuc
  revisions:
  - 8151a5a0e4f6
  tool_panel_section_label: GEMINI
- name: gemini_gene_wise
  owner: iuc
  revisions:
  - 452104bdc655
  tool_panel_section_label: GEMINI
- name: gemini_inheritance
  owner: iuc
  revisions:
  - 18d13111692b
  tool_panel_section_label: GEMINI
- name: gemini_interactions
  owner: iuc
  revisions:
  - 2550239feed5
  tool_panel_section_label: GEMINI
- name: gemini_load
  owner: iuc
  revisions:
  - 45296e47d565
  tool_panel_section_label: GEMINI
- name: gemini_lof_sieve
  owner: iuc
  revisions:
  - 2969a1f43b7d
  tool_panel_section_label: GEMINI
- name: gemini_mendel_errors
  owner: iuc
  revisions:
  - 00c2734b3bea
  tool_panel_section_label: GEMINI
- name: gemini_pathways
  owner: iuc
  revisions:
  - 9199331c3421
  tool_panel_section_label: GEMINI
- name: gemini_qc
  owner: iuc
  revisions:
  - 86e46972e183
  tool_panel_section_label: GEMINI
- name: gemini_query
  owner: iuc
  revisions:
  - da74170c55c7
  tool_panel_section_label: GEMINI
- name: gemini_recessive_and_dominant
  owner: iuc
  revisions:
  - 05124dc72dba
  tool_panel_section_label: GEMINI
- name: gemini_region
  owner: iuc
  revisions:
  - 601b70d10d92
  tool_panel_section_label: GEMINI
- name: gemini_roh
  owner: iuc
  revisions:
  - 345d41f3f574
  tool_panel_section_label: GEMINI
- name: gemini_set_somatic
  owner: iuc
  revisions:
  - e4e2128460e3
  tool_panel_section_label: GEMINI
- name: gemini_stats
  owner: iuc
  revisions:
  - 5c9efee9cb1e
  tool_panel_section_label: GEMINI
- name: gemini_windower
  owner: iuc
  revisions:
  - 0c58ba91d018
  tool_panel_section_label: GEMINI