From 401ce13d8d22fe1ec3254bfa8324ba30a4977e1a Mon Sep 17 00:00:00 2001 From: Esther Plomp <46314469+EstherPlomp@users.noreply.github.com> Date: Thu, 31 Oct 2024 19:36:49 +0100 Subject: [PATCH] Create Unsent-resources.md --- Unsent-resources.md | 45 +++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 Unsent-resources.md diff --git a/Unsent-resources.md b/Unsent-resources.md new file mode 100644 index 0000000..da6074d --- /dev/null +++ b/Unsent-resources.md @@ -0,0 +1,45 @@ + +# Resources that have not been sent out + +## RDM +- https://handbook.datalad.org/en/latest/basics/101-127-yoda.html +- https://dans.knaw.nl/en/training-faq/ + +## Peer review +- https://www.youtube.com/watch?v=JIVkdnsC-oA +- https://northwestern.zoom.us/rec/play/CePfoZrNscQT5HdIG9eBmFXxdsa1tDMmN9_vnMj44DL45OP_aeRXoz2dp1OjGNQlsgnwelk-hX5wwigA.o7hYO9CJDlgJ_DLS?canPlayFromShare=true&from=share_recording_detail&continueMode=true&componentName=rec-play&originRequestUrl=https%3A%2F%2Fnorthwestern.zoom.us%2Frec%2Fshare%2FwagvyJv6Y8IXqgYa-rQjWy826hxIt5z4Co_cvILEV1lCv4MrlWkFkNlw1s5W9kfU.TbA3SUluZ_bPiMrV (starting from 8:30) + link to PREreview resources + +## Start/improve coding skills +- Software citation: https://youtu.be/vtjAN5T1bGs +- https://datascience.nih.gov/tools-and-analytics/best-practices-for-sharing-research-software-faq (more valuable to adapt to local tu delft context) +- Sharing ML data: https://huggingface.co/blog/researcher-dataset-sharing +- https://blog.esciencecenter.nl/how-to-ensure-that-others-can-run-your-code-4c7672524a69 +- Add somewhere? Make: https://tilburgsciencehub.com/topics/automation/automation-tools/makefiles/make/ (plus other posts on the tilburg hub) +- https://www.tomwagg.com/software-citation-station/ +- R but also more widely applicable: Stop Making Spaghetti (Code) - Nicola Rennie https://www.youtube.com/watch?v=wbhWl5-xR10 +- https://opensource.guide/how-to-contribute/#communicating-effectively +- https://trufflesecurity.com/blog/anyone-can-access-deleted-and-private-repo-data-github +- https://research-software-directory.org/software/bestietemplatejl +- https://www.theregister.com/2024/08/08/anaconda_puts_the_squeeze_on/ * what can be be done about it: https://prefix.dev/blog/towards_a_vendor_lock_in_free_conda_experience +- oscmaastricht@social.edu.nl - is your software already listed in the Dutch Research Software Directory? Isn't it fun seeing the flow of #opensource releases every week? https://research-software-directory.org/organisations/maastricht-university?tab=releases + +## Copyright +- https://www.coalition-s.org/blog/exclusive-licence-to-publish-now-heres-a-thing/ (copy right transfer & NC-ND license) + +## Reproducibility +- quality or reproducibility: https://www.nature.com/articles/d42473-019-00004-y +- https://doi.org/10.5281/zenodo.12744715 + +## Integrity: +- NRIN Happy Hour - The Ethics of Using AI in Research https://www.youtube.com/watch?v=hFwNmfmLDaw&t=1937s +- Decolonised research culture and practice https://www.youtube.com/watch?v=-GsO3XCPR3c +- https://retractionwatch.com/2024/07/16/kavli-prize-winner-threatens-to-sue-critic-for-defamation/ +- https://www.nplusonemag.com/issue-34/essays/sexism-in-the-academy/ + +## Other +- [https://www.jahid-hasan.com/writings/a-complete-learning-path-for-cfd/](https://www.jahid-hasan.com/writings/a-complete-learning-path-for-cfd/) +- Russo, L., & Petropoulou Ionescu, D. (2024). The helpers, the doers, and the ones left behind: Reflections on the gendered dimension of academic citizenship in Dutch academia. Journal of Praxis in Higher Education, 6(2), 101-121. https://doi.org/10.47989/kpdc491 +- Environmental impact of data processing: https://embl-ebi.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=16c22250-ef3e-41e8-ba5d-af50010c7c0c +- https://genomic.social/@geertvangeest/110038775679758995 Do you want to find all this awesome training materials on GitHub and GitLab? Check out #Glittr (https://glittr.org): a nice web app that lets you search and compare #bioinformatics courses by topic, popularity and recency. 🚀 Whether you want to learn new skills or reuse existing materials in your own courses, Glittr.org has you covered. 😎 Check it out and share your feedback with us! 💬 +- https://elephantinthelab.org/the-potential-impact-of-ai-on-the-individual-research-process-and-science-in-general/ +- https://www.rug.nl/library/open-access/blog/take-back-control-of-research-communication-embrace-mastodon