From d5ef36163b710afd5a6a2ccc31bd9f09185bbb1e Mon Sep 17 00:00:00 2001 From: Andrea Manica Date: Thu, 2 Nov 2023 08:43:47 +0000 Subject: [PATCH] fix cran doi --- CRAN-SUBMISSION | 6 +++--- R/datasets_docs.R | 16 ++++++++-------- cran-comments.md | 7 +++++-- man/Barreto2023.Rd | 4 ++-- man/Beyer2020.Rd | 4 ++-- man/HYDE_3.3_baseline.Rd | 2 +- man/Krapp2021.Rd | 4 ++-- man/WorldClim_2.1.Rd | 2 +- 8 files changed, 24 insertions(+), 21 deletions(-) diff --git a/CRAN-SUBMISSION b/CRAN-SUBMISSION index d0b99025..3e4ab491 100644 --- a/CRAN-SUBMISSION +++ b/CRAN-SUBMISSION @@ -1,3 +1,3 @@ -Version: 1.2.4 -Date: 2023-04-25 20:01:34 UTC -SHA: 56d0482f982fd7b991442fd6b8fc62d4168647e3 +Version: 2.0.0 +Date: 2023-11-01 17:32:06 UTC +SHA: dc93c5c9f92f52ac7b178eac2b7095536868867d diff --git a/R/datasets_docs.R b/R/datasets_docs.R index d77429ac..c50d02b1 100644 --- a/R/datasets_docs.R +++ b/R/datasets_docs.R @@ -18,7 +18,7 @@ NULL #' Beyer, R.M., #' Krapp, M. & Manica, A. High-resolution terrestrial climate, bioclimate and #' vegetation for the last 120,000 years. Sci Data 7, 236 (2020). -#' \doi{doi.org/10.1038/s41597-020-0552-1} +#' \doi{10.1038/s41597-020-0552-1} #' #' The version included in `pastclim` has the ice sheets masked, as well as #' internal seas (Black and Caspian Sea) removed. The latter are based on: @@ -41,7 +41,7 @@ NULL #' #' v1.0.0 Remove ice sheets and internal seas, and use correct formula for bio15. #' Files can be downloaded from: -#' \doi{doi.org/10.6084/m9.figshare.19723405.v1} +#' \doi{10.6084/m9.figshare.19723405.v1} #' #' #' @name Beyer2020 @@ -61,7 +61,7 @@ NULL #' Krapp, M., Beyer, R.M., Edmundson, S.L. et al. A statistics-based #' reconstruction of high-resolution global terrestrial climate for the last #' 800,000 years. Sci Data 8, 228 (2021). -#' \doi{doi.org/10.1038/s41597-021-01009-3} +#' \doi{10.1038/s41597-021-01009-3} #' #' The version included in `pastclim` has the ice sheets masked. #' @@ -78,7 +78,7 @@ NULL #' #' v1.0.0 Remove ice sheets and use correct formula for bio15. #' Files can be downloaded from: -#' \doi{doi.org/10.6084/m9.figshare.19733680.v1} +#' \doi{10.6084/m9.figshare.19733680.v1} #' #' @name Krapp2021 NULL @@ -92,7 +92,7 @@ NULL #' #' Fick, S.E. and R.J. Hijmans, 2017. WorldClim 2: new 1km spatial resolution #' climate surfaces for global land areas. International Journal of Climatology 37 (12): 4302-4315. -#' \doi{doi.org/10.1002/joc.5086} +#' \doi{10.1002/joc.5086} #' #' **Present-day reconstructions** are based on the mean for the period 1970-2000, #' and are available at multiple resolutions of @@ -177,12 +177,12 @@ NULL #' PALEO-PGEM-Series: A spatial time series of the global climate over the #' last 5 million years (Plio-Pleistocene). Global Ecology and #' Biogeography, 32, 1034-1045, -#' \doi{doi.org/10.1111/geb.13683} +#' \doi{10.1111/geb.13683} #' #' Holden, P. B., Edwards, N. R., Rangel, T. F., Pereira, E. B., Tran, G. T., #' and Wilkinson, R. D. (2019): PALEO-PGEM v1.0: a statistical emulator of #' Pliocene–Pleistocene climate, Geosci. Model Dev., 12, 5137–5155, -#' \doi{doi.org/10.5194/gmd-12-5137-2019}. +#' \doi{10.5194/gmd-12-5137-2019}. #' #' @name Barreto2023 NULL @@ -212,7 +212,7 @@ NULL #' #' Klein Goldewijk, K., Beusen, A., Doelman, J., and Stehfest, E.: #' Anthropogenic land-use estimates for the Holocene; HYDE 3.2, -#' Earth Syst. Sci. Data, 9, 927-953, 2017. \doi{doi.org/10.5194/essd-9-1-2017} +#' Earth Syst. Sci. Data, 9, 927-953, 2017. \doi{10.5194/essd-9-1-2017} #' #' @name HYDE_3.3_baseline NULL diff --git a/cran-comments.md b/cran-comments.md index c799e526..d6a85b2b 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,11 +1,14 @@ +## This is a re-submission +DOI incorrectly started with doi.org/; they have all now been fixed and raised +no issues with any check. + ## Test environments - R-hub windows-x86_64-devel (r-devel) - R-hub ubuntu-gcc-release (r-release) - R-hub fedora-clang-devel (r-devel) - devtools::check_mac_release -No NOTES on any environment, except for a NOTE on some DOI giving a 404 Status. -All the DOIs were checked manually and work. +No NOTES on any environment. ## Checks on CRAN for previous version of pastclim As detailed in: diff --git a/man/Barreto2023.Rd b/man/Barreto2023.Rd index 5479a095..4fb6c3e4 100644 --- a/man/Barreto2023.Rd +++ b/man/Barreto2023.Rd @@ -34,10 +34,10 @@ Barreto, E., Holden, P. B., Edwards, N. R., & Rangel, T. F. (2023). PALEO-PGEM-Series: A spatial time series of the global climate over the last 5 million years (Plio-Pleistocene). Global Ecology and Biogeography, 32, 1034-1045, -\doi{doi.org/10.1111/geb.13683} +\doi{10.1111/geb.13683} Holden, P. B., Edwards, N. R., Rangel, T. F., Pereira, E. B., Tran, G. T., and Wilkinson, R. D. (2019): PALEO-PGEM v1.0: a statistical emulator of Pliocene–Pleistocene climate, Geosci. Model Dev., 12, 5137–5155, -\doi{doi.org/10.5194/gmd-12-5137-2019}. +\doi{10.5194/gmd-12-5137-2019}. } diff --git a/man/Beyer2020.Rd b/man/Beyer2020.Rd index 1ede9246..9ae345da 100644 --- a/man/Beyer2020.Rd +++ b/man/Beyer2020.Rd @@ -13,7 +13,7 @@ If you use this dataset, make sure to cite the original publication: Beyer, R.M., Krapp, M. & Manica, A. High-resolution terrestrial climate, bioclimate and vegetation for the last 120,000 years. Sci Data 7, 236 (2020). -\doi{doi.org/10.1038/s41597-020-0552-1} +\doi{10.1038/s41597-020-0552-1} The version included in \code{pastclim} has the ice sheets masked, as well as internal seas (Black and Caspian Sea) removed. The latter are based on: @@ -36,5 +36,5 @@ v1.1.0 Added monthly variables. Files can be downloaded from: v1.0.0 Remove ice sheets and internal seas, and use correct formula for bio15. Files can be downloaded from: -\doi{doi.org/10.6084/m9.figshare.19723405.v1} +\doi{10.6084/m9.figshare.19723405.v1} } diff --git a/man/HYDE_3.3_baseline.Rd b/man/HYDE_3.3_baseline.Rd index 012e7c8d..67b4870b 100644 --- a/man/HYDE_3.3_baseline.Rd +++ b/man/HYDE_3.3_baseline.Rd @@ -27,5 +27,5 @@ for the HYDE 3.2 (there is no current publication for 3.3): Klein Goldewijk, K., Beusen, A., Doelman, J., and Stehfest, E.: Anthropogenic land-use estimates for the Holocene; HYDE 3.2, -Earth Syst. Sci. Data, 9, 927-953, 2017. \doi{doi.org/10.5194/essd-9-1-2017} +Earth Syst. Sci. Data, 9, 927-953, 2017. \doi{10.5194/essd-9-1-2017} } diff --git a/man/Krapp2021.Rd b/man/Krapp2021.Rd index 507542ff..f8191dc3 100644 --- a/man/Krapp2021.Rd +++ b/man/Krapp2021.Rd @@ -16,7 +16,7 @@ If you use this dataset, make sure to cite the original publication: Krapp, M., Beyer, R.M., Edmundson, S.L. et al. A statistics-based reconstruction of high-resolution global terrestrial climate for the last 800,000 years. Sci Data 8, 228 (2021). -\doi{doi.org/10.1038/s41597-021-01009-3} +\doi{10.1038/s41597-021-01009-3} The version included in \code{pastclim} has the ice sheets masked. @@ -33,5 +33,5 @@ v1.1.0 Added monthly variables. Files can be downloaded from: v1.0.0 Remove ice sheets and use correct formula for bio15. Files can be downloaded from: -\doi{doi.org/10.6084/m9.figshare.19733680.v1} +\doi{10.6084/m9.figshare.19733680.v1} } diff --git a/man/WorldClim_2.1.Rd b/man/WorldClim_2.1.Rd index 2f3ba20a..6b9c1fc5 100644 --- a/man/WorldClim_2.1.Rd +++ b/man/WorldClim_2.1.Rd @@ -13,7 +13,7 @@ dataset, make sure to cite the original publication: \details{ Fick, S.E. and R.J. Hijmans, 2017. WorldClim 2: new 1km spatial resolution climate surfaces for global land areas. International Journal of Climatology 37 (12): 4302-4315. -\doi{doi.org/10.1002/joc.5086} +\doi{10.1002/joc.5086} \strong{Present-day reconstructions} are based on the mean for the period 1970-2000, and are available at multiple resolutions of