The newest ruff applies an isort-like operation to __all__ (#3527)

python/dolfinx/common.py

@@ -28,7 +28,6 @@
 __all__ = [
     "IndexMap",
     "Timer",
-    "timed",
     "git_commit_hash",
     "has_adios2",
     "has_complex_ufcx_kernels",
@@ -39,6 +38,7 @@
     "has_petsc4py",
     "has_ptscotch",
     "has_slepc",
+    "timed",
     "ufcx_signature",
 ]
 

python/dolfinx/fem/__init__.py

@@ -164,36 +164,36 @@ def compute_integration_domains(
 
 __all__ = [
     "Constant",
+    "CoordinateElement",
+    "DirichletBC",
+    "DofMap",
+    "ElementMetaData",
     "Expression",
+    "Form",
     "Function",
-    "ElementMetaData",
-    "create_matrix",
-    "compute_integration_domains",
-    "functionspace",
     "FunctionSpace",
-    "create_sparsity_pattern",
-    "discrete_gradient",
-    "assemble_scalar",
+    "IntegralType",
+    "apply_lifting",
     "assemble_matrix",
+    "assemble_scalar",
     "assemble_vector",
-    "apply_lifting",
-    "DirichletBC",
-    "dirichletbc",
     "bcs_by_block",
-    "DofMap",
-    "Form",
-    "form",
-    "IntegralType",
+    "compile_form",
+    "compute_integration_domains",
+    "coordinate_element",
+    "create_form",
+    "create_interpolation_data",
+    "create_matrix",
+    "create_sparsity_pattern",
     "create_vector",
-    "locate_dofs_geometrical",
-    "locate_dofs_topological",
+    "dirichletbc",
+    "discrete_gradient",
     "extract_function_spaces",
-    "transpose_dofmap",
-    "create_interpolation_data",
-    "CoordinateElement",
-    "coordinate_element",
+    "form",
     "form_cpp_class",
-    "create_form",
-    "compile_form",
+    "functionspace",
+    "locate_dofs_geometrical",
+    "locate_dofs_topological",
     "set_bc",
+    "transpose_dofmap",
 ]

python/dolfinx/fem/petsc.py

@@ -44,26 +44,26 @@
 from dolfinx.la import create_petsc_vector
 
 __all__ = [
-    "create_vector",
-    "create_vector_block",
-    "create_vector_nest",
+    "LinearProblem",
+    "NonlinearProblem",
+    "apply_lifting",
+    "apply_lifting_nest",
+    "assemble_matrix",
+    "assemble_matrix_block",
+    "assemble_matrix_nest",
+    "assemble_vector",
+    "assemble_vector_block",
+    "assemble_vector_nest",
     "create_matrix",
     "create_matrix_block",
     "create_matrix_nest",
-    "assemble_vector",
-    "assemble_vector_nest",
-    "assemble_vector_block",
-    "assemble_matrix",
-    "assemble_matrix_nest",
-    "assemble_matrix_block",
-    "apply_lifting",
-    "apply_lifting_nest",
-    "set_bc",
-    "set_bc_nest",
-    "LinearProblem",
-    "NonlinearProblem",
+    "create_vector",
+    "create_vector_block",
+    "create_vector_nest",
     "discrete_gradient",
     "interpolation_matrix",
+    "set_bc",
+    "set_bc_nest",
 ]
 
 

python/dolfinx/geometry.py

@@ -21,15 +21,15 @@
 
 __all__ = [
     "BoundingBoxTree",
+    "PointOwnershipData",
     "bb_tree",
-    "compute_colliding_cells",
-    "squared_distance",
     "compute_closest_entity",
-    "compute_collisions_trees",
+    "compute_colliding_cells",
     "compute_collisions_points",
+    "compute_collisions_trees",
     "compute_distance_gjk",
     "create_midpoint_tree",
-    "PointOwnershipData",
+    "squared_distance",
 ]
 
 

python/dolfinx/io/__init__.py

@@ -9,7 +9,7 @@
 from dolfinx.io import gmshio
 from dolfinx.io.utils import VTKFile, XDMFFile, distribute_entity_data
 
-__all__ = ["gmshio", "distribute_entity_data", "VTKFile", "XDMFFile"]
+__all__ = ["VTKFile", "XDMFFile", "distribute_entity_data", "gmshio"]
 
 if _cpp.common.has_adios2:
     # VTXWriter requires ADIOS2

python/dolfinx/io/gmshio.py

@@ -24,11 +24,11 @@
 
 __all__ = [
     "cell_perm_array",
-    "ufl_mesh",
-    "extract_topology_and_markers",
     "extract_geometry",
+    "extract_topology_and_markers",
     "model_to_mesh",
     "read_from_msh",
+    "ufl_mesh",
 ]
 
 

python/dolfinx/la.py

@@ -15,15 +15,15 @@
 from dolfinx.cpp.la import BlockMode, InsertMode, Norm
 
 __all__ = [
-    "orthonormalize",
-    "is_orthonormal",
-    "matrix_csr",
-    "vector",
+    "InsertMode",
     "MatrixCSR",
     "Norm",
-    "InsertMode",
     "Vector",
     "create_petsc_vector",
+    "is_orthonormal",
+    "matrix_csr",
+    "orthonormalize",
+    "vector",
 ]
 
 

python/dolfinx/mesh.py

@@ -35,36 +35,36 @@
 from dolfinx.fem import coordinate_element as _coordinate_element
 
 __all__ = [
-    "meshtags_from_entities",
-    "locate_entities",
-    "locate_entities_boundary",
-    "refine",
-    "create_mesh",
-    "create_submesh",
-    "Mesh",
-    "MeshTags",
-    "meshtags",
     "CellType",
+    "Geometry",
     "GhostMode",
+    "Mesh",
+    "MeshTags",
+    "Topology",
     "build_dual_graph",
     "cell_dim",
-    "compute_midpoints",
-    "exterior_facet_indices",
     "compute_incident_entities",
+    "compute_midpoints",
+    "create_box",
     "create_cell_partitioner",
+    "create_geometry",
     "create_interval",
-    "create_unit_interval",
+    "create_mesh",
     "create_rectangle",
-    "create_unit_square",
-    "create_box",
+    "create_submesh",
     "create_unit_cube",
-    "to_type",
+    "create_unit_interval",
+    "create_unit_square",
+    "entities_to_geometry",
+    "exterior_facet_indices",
+    "locate_entities",
+    "locate_entities_boundary",
+    "meshtags",
+    "meshtags_from_entities",
+    "refine",
     "to_string",
+    "to_type",
     "transfer_meshtag",
-    "entities_to_geometry",
-    "create_geometry",
-    "Geometry",
-    "Topology",
 ]
 
 

python/dolfinx/utils.py

@@ -14,7 +14,7 @@
 
 import numpy as np
 
-__all__ = ["cffi_utils", "numba_utils", "ctypes_utils"]
+__all__ = ["cffi_utils", "ctypes_utils", "numba_utils"]
 
 
 def get_petsc_lib() -> pathlib.Path: