From 80bc4c6396d0ab98232ade60ed0092c4356971f7 Mon Sep 17 00:00:00 2001 From: jennydaman Date: Thu, 5 Oct 2023 09:13:34 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20FNNDSC/a?= =?UTF-8?q?iochris@61a3dbf174b06244006a1cba70d3294dee3c1e27=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- aiochris.html | 110 ++++++------- aiochris/client.html | 2 +- aiochris/client/admin.html | 214 +++++++++++++------------- aiochris/client/anon.html | 2 +- aiochris/client/authed.html | 2 +- aiochris/client/base.html | 2 +- aiochris/client/from_chrs.html | 2 +- aiochris/client/normal.html | 2 +- aiochris/errors.html | 2 +- aiochris/models.html | 2 +- aiochris/models/collection_links.html | 2 +- aiochris/models/data.html | 2 +- aiochris/models/logged_in.html | 2 +- aiochris/models/public.html | 2 +- aiochris/types.html | 2 +- aiochris/util.html | 2 +- aiochris/util/search.html | 2 +- search.js | 2 +- 18 files changed, 183 insertions(+), 173 deletions(-) diff --git a/aiochris.html b/aiochris.html index 6095ff9..7c8f3ee 100644 --- a/aiochris.html +++ b/aiochris.html @@ -150,7 +150,7 @@

API Documentation

- + built with Inherited Members 120 compute_url: str | PfconUrl, 121 compute_user: str, 122 compute_password: str, -123 description: str = None, -124 compute_auth_url: str = None, -125 compute_auth_token: str = None, -126 max_job_exec_seconds: str = None, -127 ) -> ComputeResource: -128 """ -129 Define a new compute resource. -130 """ -131 return await (await self._admin).create_compute_resource( -132 name=name, -133 compute_url=compute_url, -134 compute_user=compute_user, -135 compute_password=compute_password, -136 description=description, -137 compute_auth_url=compute_auth_url, -138 compute_auth_token=compute_auth_token, -139 max_job_exec_seconds=max_job_exec_seconds, -140 ) -141 -142 @async_cached_property -143 async def _admin(self) -> _AdminApiClient: -144 """ -145 Get a (sub-)client for `/chris-admin/api/v1/` -146 """ -147 res = await self.s.get(self.collection_links.admin) -148 body = await res.json() -149 links = from_dict(AdminApiCollectionLinks, body["collection_links"]) -150 return _AdminApiClient( -151 url=self.collection_links.admin, -152 s=self.s, -153 collection_links=links, -154 max_search_requests=self.max_search_requests, -155 ) +123 compute_innetwork: bool = None, +124 description: str = None, +125 compute_auth_url: str = None, +126 compute_auth_token: str = None, +127 max_job_exec_seconds: str = None, +128 ) -> ComputeResource: +129 """ +130 Define a new compute resource. +131 """ +132 return await (await self._admin).create_compute_resource( +133 name=name, +134 compute_url=compute_url, +135 compute_user=compute_user, +136 compute_password=compute_password, +137 compute_innetwork=compute_innetwork, +138 description=description, +139 compute_auth_url=compute_auth_url, +140 compute_auth_token=compute_auth_token, +141 max_job_exec_seconds=max_job_exec_seconds, +142 ) +143 +144 @async_cached_property +145 async def _admin(self) -> _AdminApiClient: +146 """ +147 Get a (sub-)client for `/chris-admin/api/v1/` +148 """ +149 res = await self.s.get(self.collection_links.admin) +150 body = await res.json() +151 links = from_dict(AdminApiCollectionLinks, body["collection_links"]) +152 return _AdminApiClient( +153 url=self.collection_links.admin, +154 s=self.s, +155 collection_links=links, +156 max_search_requests=self.max_search_requests, +157 ) @@ -1018,7 +1020,7 @@
Parameters
async def - create_compute_resource( self, name: Union[str, aiochris.types.ComputeResourceName], compute_url: Union[str, aiochris.types.PfconUrl], compute_user: str, compute_password: str, description: str = None, compute_auth_url: str = None, compute_auth_token: str = None, max_job_exec_seconds: str = None) -> aiochris.models.public.ComputeResource: + create_compute_resource( self, name: Union[str, aiochris.types.ComputeResourceName], compute_url: Union[str, aiochris.types.PfconUrl], compute_user: str, compute_password: str, compute_innetwork: bool = None, description: str = None, compute_auth_url: str = None, compute_auth_token: str = None, max_job_exec_seconds: str = None) -> aiochris.models.public.ComputeResource: @@ -1030,24 +1032,26 @@
Parameters
120 compute_url: str | PfconUrl, 121 compute_user: str, 122 compute_password: str, -123 description: str = None, -124 compute_auth_url: str = None, -125 compute_auth_token: str = None, -126 max_job_exec_seconds: str = None, -127 ) -> ComputeResource: -128 """ -129 Define a new compute resource. -130 """ -131 return await (await self._admin).create_compute_resource( -132 name=name, -133 compute_url=compute_url, -134 compute_user=compute_user, -135 compute_password=compute_password, -136 description=description, -137 compute_auth_url=compute_auth_url, -138 compute_auth_token=compute_auth_token, -139 max_job_exec_seconds=max_job_exec_seconds, -140 ) +123 compute_innetwork: bool = None, +124 description: str = None, +125 compute_auth_url: str = None, +126 compute_auth_token: str = None, +127 max_job_exec_seconds: str = None, +128 ) -> ComputeResource: +129 """ +130 Define a new compute resource. +131 """ +132 return await (await self._admin).create_compute_resource( +133 name=name, +134 compute_url=compute_url, +135 compute_user=compute_user, +136 compute_password=compute_password, +137 compute_innetwork=compute_innetwork, +138 description=description, +139 compute_auth_url=compute_auth_url, +140 compute_auth_token=compute_auth_token, +141 max_job_exec_seconds=max_job_exec_seconds, +142 )
diff --git a/aiochris/client.html b/aiochris/client.html index c195900..dd0c703 100644 --- a/aiochris/client.html +++ b/aiochris/client.html @@ -39,7 +39,7 @@

Submodules

- + built with API Documentation -
Version v0.3.2
+
Version v0.4.0
 built with 119 compute_url: str | PfconUrl, 120 compute_user: str, 121 compute_password: str, -122 description: str = None, -123 compute_auth_url: str = None, -124 compute_auth_token: str = None, -125 max_job_exec_seconds: str = None, -126 ) -> ComputeResource: -127 """ -128 Define a new compute resource. -129 """ -130 return await (await self._admin).create_compute_resource( -131 name=name, -132 compute_url=compute_url, -133 compute_user=compute_user, -134 compute_password=compute_password, -135 description=description, -136 compute_auth_url=compute_auth_url, -137 compute_auth_token=compute_auth_token, -138 max_job_exec_seconds=max_job_exec_seconds, -139 ) -140 -141 @async_cached_property -142 async def _admin(self) -> _AdminApiClient: -143 """ -144 Get a (sub-)client for `/chris-admin/api/v1/` -145 """ -146 res = await self.s.get(self.collection_links.admin) -147 body = await res.json() -148 links = from_dict(AdminApiCollectionLinks, body["collection_links"]) -149 return _AdminApiClient( -150 url=self.collection_links.admin, -151 s=self.s, -152 collection_links=links, -153 max_search_requests=self.max_search_requests, -154 ) -155 -156 -157def _serialize_crs( -158 c: str | ComputeResource | Iterable[ComputeResource | ComputeResourceName], -159) -> str: -160 if isinstance(c, str): -161 return c -162 if isinstance(c, ComputeResource): -163 return c.name -164 if not isinstance(c, Iterable): -165 raise TypeError("compute_resources must be str or Iterable") -166 return ",".join(map(_serialize_cr, c)) -167 -168 -169def _serialize_cr(c: str | ComputeResource): -170 if isinstance(c, ComputeResource): -171 return c.name -172 return str(c) +122 compute_innetwork: bool = None, +123 description: str = None, +124 compute_auth_url: str = None, +125 compute_auth_token: str = None, +126 max_job_exec_seconds: str = None, +127 ) -> ComputeResource: +128 """ +129 Define a new compute resource. +130 """ +131 return await (await self._admin).create_compute_resource( +132 name=name, +133 compute_url=compute_url, +134 compute_user=compute_user, +135 compute_password=compute_password, +136 compute_innetwork=compute_innetwork, +137 description=description, +138 compute_auth_url=compute_auth_url, +139 compute_auth_token=compute_auth_token, +140 max_job_exec_seconds=max_job_exec_seconds, +141 ) +142 +143 @async_cached_property +144 async def _admin(self) -> _AdminApiClient: +145 """ +146 Get a (sub-)client for `/chris-admin/api/v1/` +147 """ +148 res = await self.s.get(self.collection_links.admin) +149 body = await res.json() +150 links = from_dict(AdminApiCollectionLinks, body["collection_links"]) +151 return _AdminApiClient( +152 url=self.collection_links.admin, +153 s=self.s, +154 collection_links=links, +155 max_search_requests=self.max_search_requests, +156 ) +157 +158 +159def _serialize_crs( +160 c: str | ComputeResource | Iterable[ComputeResource | ComputeResourceName], +161) -> str: +162 if isinstance(c, str): +163 return c +164 if isinstance(c, ComputeResource): +165 return c.name +166 if not isinstance(c, Iterable): +167 raise TypeError("compute_resources must be str or Iterable") +168 return ",".join(map(_serialize_cr, c)) +169 +170 +171def _serialize_cr(c: str | ComputeResource): +172 if isinstance(c, ComputeResource): +173 return c.name +174 return str(c) @@ -344,39 +346,41 @@

120 compute_url: str | PfconUrl, 121 compute_user: str, 122 compute_password: str, -123 description: str = None, -124 compute_auth_url: str = None, -125 compute_auth_token: str = None, -126 max_job_exec_seconds: str = None, -127 ) -> ComputeResource: -128 """ -129 Define a new compute resource. -130 """ -131 return await (await self._admin).create_compute_resource( -132 name=name, -133 compute_url=compute_url, -134 compute_user=compute_user, -135 compute_password=compute_password, -136 description=description, -137 compute_auth_url=compute_auth_url, -138 compute_auth_token=compute_auth_token, -139 max_job_exec_seconds=max_job_exec_seconds, -140 ) -141 -142 @async_cached_property -143 async def _admin(self) -> _AdminApiClient: -144 """ -145 Get a (sub-)client for `/chris-admin/api/v1/` -146 """ -147 res = await self.s.get(self.collection_links.admin) -148 body = await res.json() -149 links = from_dict(AdminApiCollectionLinks, body["collection_links"]) -150 return _AdminApiClient( -151 url=self.collection_links.admin, -152 s=self.s, -153 collection_links=links, -154 max_search_requests=self.max_search_requests, -155 ) +123 compute_innetwork: bool = None, +124 description: str = None, +125 compute_auth_url: str = None, +126 compute_auth_token: str = None, +127 max_job_exec_seconds: str = None, +128 ) -> ComputeResource: +129 """ +130 Define a new compute resource. +131 """ +132 return await (await self._admin).create_compute_resource( +133 name=name, +134 compute_url=compute_url, +135 compute_user=compute_user, +136 compute_password=compute_password, +137 compute_innetwork=compute_innetwork, +138 description=description, +139 compute_auth_url=compute_auth_url, +140 compute_auth_token=compute_auth_token, +141 max_job_exec_seconds=max_job_exec_seconds, +142 ) +143 +144 @async_cached_property +145 async def _admin(self) -> _AdminApiClient: +146 """ +147 Get a (sub-)client for `/chris-admin/api/v1/` +148 """ +149 res = await self.s.get(self.collection_links.admin) +150 body = await res.json() +151 links = from_dict(AdminApiCollectionLinks, body["collection_links"]) +152 return _AdminApiClient( +153 url=self.collection_links.admin, +154 s=self.s, +155 collection_links=links, +156 max_search_requests=self.max_search_requests, +157 ) @@ -538,7 +542,7 @@

Parameters
async def - create_compute_resource( self, name: Union[str, aiochris.types.ComputeResourceName], compute_url: Union[str, aiochris.types.PfconUrl], compute_user: str, compute_password: str, description: str = None, compute_auth_url: str = None, compute_auth_token: str = None, max_job_exec_seconds: str = None) -> aiochris.models.public.ComputeResource: + create_compute_resource( self, name: Union[str, aiochris.types.ComputeResourceName], compute_url: Union[str, aiochris.types.PfconUrl], compute_user: str, compute_password: str, compute_innetwork: bool = None, description: str = None, compute_auth_url: str = None, compute_auth_token: str = None, max_job_exec_seconds: str = None) -> aiochris.models.public.ComputeResource: @@ -550,24 +554,26 @@
Parameters
120 compute_url: str | PfconUrl, 121 compute_user: str, 122 compute_password: str, -123 description: str = None, -124 compute_auth_url: str = None, -125 compute_auth_token: str = None, -126 max_job_exec_seconds: str = None, -127 ) -> ComputeResource: -128 """ -129 Define a new compute resource. -130 """ -131 return await (await self._admin).create_compute_resource( -132 name=name, -133 compute_url=compute_url, -134 compute_user=compute_user, -135 compute_password=compute_password, -136 description=description, -137 compute_auth_url=compute_auth_url, -138 compute_auth_token=compute_auth_token, -139 max_job_exec_seconds=max_job_exec_seconds, -140 ) +123 compute_innetwork: bool = None, +124 description: str = None, +125 compute_auth_url: str = None, +126 compute_auth_token: str = None, +127 max_job_exec_seconds: str = None, +128 ) -> ComputeResource: +129 """ +130 Define a new compute resource. +131 """ +132 return await (await self._admin).create_compute_resource( +133 name=name, +134 compute_url=compute_url, +135 compute_user=compute_user, +136 compute_password=compute_password, +137 compute_innetwork=compute_innetwork, +138 description=description, +139 compute_auth_url=compute_auth_url, +140 compute_auth_token=compute_auth_token, +141 max_job_exec_seconds=max_job_exec_seconds, +142 )
diff --git a/aiochris/client/anon.html b/aiochris/client/anon.html index 77004f3..9a40908 100644 --- a/aiochris/client/anon.html +++ b/aiochris/client/anon.html @@ -46,7 +46,7 @@

API Documentation

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\n\n

Installation

\n\n

Requires Python 3.10 or 3.11.

\n\n
\n
pip install aiochris\n# or\npoetry add aiochris\n
\n
\n\n

Brief Example

\n\n
\n
from aiochris import ChrisClient\n\nchris = await ChrisClient.from_login(\n    username='chris',\n    password='chris1234',\n    url='https://cube.chrisproject.org/api/v1/'\n)\ndircopy = await chris.search_plugins(name_exact='pl-brainmgz', version='2.0.3').get_only()\nplinst = await dircopy.create_instance(compute_resource_name='host')\nawait plinst.set(title="copies brain image files into feed")\n
\n
\n\n

Introduction

\n\n

aiochris provides three core classes: AnonChrisClient, ChrisClient, and ChrisAdminClient.\nThese clients differ in permissions.

\n\n

\nMethods are only defined for what the client has permission to see or do.

\n\n
\n
anon_client = await AnonChrisClient.from_url('https://cube.chrisproject.org/api/v1/')\n# ok: can search for plugins without logging in...\nplugin = await anon_client.search_plugins(name_exact='pl-mri10yr06mo01da_normal').first()\n# IMPOSSIBLE! AnonChrisClient.create_instance not defined...\nawait plugin.create_instance()\n\n# IMPOSSIBLE! authentication required for ChrisClient\nauthed_client = await ChrisClient.from_url('https://cube.chrisproject.org/api/v1/')\nauthed_client = await ChrisClient.from_login(\n    url='https://cube.chrisproject.org/api/v1/',\n    username='chris',\n    password='chris1234'\n)\n# authenticated client can also search for plugins\nplugin = await authed_client.search_plugins(name_exact='pl-mri10yr06mo01da_normal').first()\nawait plugin.create_instance()  # works!\n
\n
\n\n

\n\n

Client Constructors

\n\n\n\n

aiochris in Jupyter Notebook

\n\n

Jupyter and IPython support top-level await. This, in conjunction with ChrisClient.from_chrs,\nmake aiochris a great way to use _ChRIS_ interactively with code.

\n\n

For a walkthrough, see https://github.com/FNNDSC/aiochris/blob/master/examples/aiochris_as_a_shell.ipynb

\n\n

Working with aiohttp

\n\n

aiochris hides the implementation detail that it is built upon aiohttp,\nhowever one thing is important to keep in mind:\nbe sure to call ChrisClient.close at the end of your program.

\n\n
\n
chris = await ChrisClient.from_login(...)\n# -- snip --\nawait chris.close()\n
\n
\n\n

You can also use an\nasynchronous context manager.

\n\n
\n
async with (await ChrisClient.from_login(...)) as chris:\n    await chris.upload_file('./something.dat', 'something.dat')\n    ...\n
\n
\n\n

Efficiency with Multiple Clients

\n\n

If using more than one aiohttp client in an application, it's more efficient\nto use the same\nconnector.\nOne connector instance should be shared among every client object,\nincluding all aiochris clients and other aiohttp clients.

\n\n

\nExample: efficiently using multiple aiohttp clients

\n\n
\n
import aiohttp\nfrom aiochris import ChrisClient\n\nwith aiohttp.TCPConnector() as connector:\n    chris_client1 = await ChrisClient.from_login(\n        url='https://example.com/cube/api/v1/',\n        username='user1',\n        password='user1234',\n        connector=connector,\n        connector_owner=False\n    )\n    chris_client2 = await ChrisClient.from_login(\n        url='https://example.com/cube/api/v1/',\n        username='user2',\n        password='user4321',\n        connector=connector,\n        connector_owner=False\n    )\n    plain_http_client = aiohttp.ClientSession(connector=connector, connector_owner=False)\n
\n
\n\n

\n\n

Advice for Getting Started

\n\n

Searching for things (plugins, plugin instances, files) in CUBE is a common task,\nand CUBE often returns multiple items per response.\nHence, it is important to understand how the Search helper class works.\nIt simplifies how we interact with paginated collection responses from CUBE.

\n\n

When performing batch operations, use\nasyncio.gather\nto run async functions concurrently.

\n\n

aiochris uses many generic types, so it is recommended you use an IDE\nwith good support for type hints, such as\nPyCharm\nor VSCodium with\nPylance configured.

\n\n

Examples

\n\n

Create a client given username and password

\n\n
\n
from aiochris import ChrisClient\n\nchris = await ChrisClient.from_login(\n    url='https://cube.chrisproject.org/api/v1/',\n    username='chris',\n    password='chris1234'\n)\n
\n
\n\n

Search for a plugin

\n\n
\n
# it's recommended to specify plugin version\nplugin = await chris.search_plugins(name_exact="pl-dcm2niix", version="0.1.0").get_only()\n\n# but if you don't care about plugin version...\nplugin = await chris.search_plugins(name_exact="pl-dcm2niix").first()\n
\n
\n\n

Create a feed by uploading a file

\n\n
\n
uploaded_file = await chris.upload_file('./brain.nii', 'my_experiment/brain.nii')\ndircopy = await chris.search_plugins(name_exact='pl-dircopy', version="2.1.1").get_only()\nplinst = await dircopy.create_instance(dir=uploaded_file.parent)\nfeed = await plinst.get_feed()\nawait feed.set(name="An experiment on uploaded file brain.nii")\n
\n
\n\n

Run a ds-type ChRIS plugin

\n\n
\n
# search for plugin to run\nplugin = await chris.search_plugins(name_exact="pl-dcm2niix", version="0.1.0").get_only()\n\n# search for parent node \nprevious = await chris.plugin_instances(id=44).get_only()\n\nawait plugin.create_instance(\n    previous=previous,               # required. alternatively, specify previous_id\n    title="convert DICOM to NIFTI",  # optional\n    compute_resource_name="galena",  # optional\n    memory_limit="2000Mi",           # optional\n    d=9,                             # optional parameter of pl-dcm2niix\n)\n
\n
\n\n

Search for plugin instances

\n\n
\n
finished_freesurfers = chris.plugin_instances(\n    plugin_name_exact='pl-fshack',\n    status='finishedSuccessfully'\n)\nasync for p in finished_freesurfers:\n    print(f'"{p.title}" finished on date: {p.end_date}')\n
\n
\n\n

Delete all plugin instances with a given title, in parallel

\n\n
\n
import asyncio\nfrom aiochris import ChrisClient, acollect\n\nchris = ChrisClient.from_login(...)\nsearch = chris.plugin_instances(title="delete me")\nplugin_instances = await acollect(search)\nawait asyncio.gather(*(p.delete() for p in plugin_instances))\n
\n
\n\n

Enable Debug Logging

\n\n

A log message will be printed to stderr before every HTTP request is sent.

\n\n
\n
import logging\n\nlogging.basicConfig(level=logging.DEBUG)\n
\n
\n"}, "aiochris.AnonChrisClient": {"fullname": "aiochris.AnonChrisClient", "modulename": "aiochris", "qualname": "AnonChrisClient", "kind": "class", "doc": "

An anonymous ChRIS client. It has access to read-only GET resources,\nsuch as being able to search for plugins.

\n", "bases": "aiochris.client.base.BaseChrisClient[aiochris.models.collection_links.AnonymousCollectionLinks, 'AnonChrisClient']"}, "aiochris.AnonChrisClient.from_url": {"fullname": "aiochris.AnonChrisClient.from_url", "modulename": "aiochris", "qualname": "AnonChrisClient.from_url", "kind": "function", "doc": "

Create an anonymous client.

\n\n

See aiochris.client.base.BaseChrisClient.new for parameter documentation.

\n", "signature": "(\tcls,\turl: str,\tmax_search_requests: int = 100,\tconnector: Optional[aiohttp.connector.BaseConnector] = None,\tconnector_owner: bool = True) -> aiochris.client.anon.AnonChrisClient:", "funcdef": "async def"}, "aiochris.AnonChrisClient.search_plugins": {"fullname": "aiochris.AnonChrisClient.search_plugins", "modulename": "aiochris", "qualname": "AnonChrisClient.search_plugins", "kind": "function", "doc": "

Search for plugins.

\n\n

Since this client is not logged in, you cannot create plugin instances using this client.

\n", "signature": "(\tself,\t**query) -> aiochris.util.search.Search[aiochris.models.public.PublicPlugin]:", "funcdef": "def"}, "aiochris.ChrisClient": {"fullname": "aiochris.ChrisClient", "modulename": "aiochris", "qualname": "ChrisClient", "kind": "class", "doc": "

A normal user ChRIS client, who may upload files and create plugin instances.

\n", "bases": "aiochris.client.authed.AuthenticatedClient[aiochris.models.collection_links.CollectionLinks, 'ChrisClient']"}, "aiochris.ChrisClient.create_user": {"fullname": "aiochris.ChrisClient.create_user", "modulename": "aiochris", "qualname": "ChrisClient.create_user", "kind": "function", "doc": "

\n", "signature": "(\tcls,\turl: Union[aiochris.types.ChrisURL, str],\tusername: Union[aiochris.types.Username, str],\tpassword: Union[aiochris.types.Password, str],\temail: str,\tsession: Optional[aiohttp.client.ClientSession] = None) -> aiochris.models.data.UserData:", "funcdef": "async def"}, "aiochris.ChrisAdminClient": {"fullname": "aiochris.ChrisAdminClient", "modulename": "aiochris", "qualname": "ChrisAdminClient", "kind": "class", "doc": "

A client who has access to /chris-admin/. Admins can register new plugins and\nadd new compute resources.

\n", "bases": "aiochris.client.authed.AuthenticatedClient[aiochris.models.collection_links.AdminCollectionLinks, 'ChrisAdminClient']"}, "aiochris.ChrisAdminClient.register_plugin_from_store": {"fullname": "aiochris.ChrisAdminClient.register_plugin_from_store", "modulename": "aiochris", "qualname": "ChrisAdminClient.register_plugin_from_store", "kind": "function", "doc": "

Register a plugin from a ChRIS Store.

\n", "signature": "(\tself,\tplugin_store_url: aiochris.types.PluginUrl,\tcompute_names: Iterable[aiochris.types.ComputeResourceName]) -> aiochris.models.logged_in.Plugin:", "funcdef": "async def"}, "aiochris.ChrisAdminClient.add_plugin": {"fullname": "aiochris.ChrisAdminClient.add_plugin", "modulename": "aiochris", "qualname": "ChrisAdminClient.add_plugin", "kind": "function", "doc": "

Add a plugin to CUBE.

\n\n
Examples
\n\n
\n
cmd = ['docker', 'run', '--rm', 'fnndsc/pl-mri-preview', 'chris_plugin_info']\noutput = subprocess.check_output(cmd, text=True)\ndesc = json.loads(output)\ndesc['name'] = 'pl-mri-preview'\ndesc['public_repo'] = 'https://github.com/FNNDSC/pl-mri-preview'\ndesc['dock_image'] = 'fnndsc/pl-mri-preview'\n\nawait chris_admin.add_plugin(plugin_description=desc, compute_resources='host')\n
\n
\n\n

The example above is just for show. It's not a good example for several reasons:

\n\n\n\n
\n
all_computes = await chris_admin.get_all_compute_resources()\nawait chris_admin.add_plugin(plugin_description=desc, compute_resources=all_computes)\n
\n
\n\n
Parameters
\n\n\n", "signature": "(\tself,\tplugin_description: str | dict,\tcompute_resources: Union[str, aiochris.models.public.ComputeResource, Iterable[Union[aiochris.models.public.ComputeResource, aiochris.types.ComputeResourceName]]]) -> aiochris.models.logged_in.Plugin:", "funcdef": "async def"}, "aiochris.ChrisAdminClient.create_compute_resource": {"fullname": "aiochris.ChrisAdminClient.create_compute_resource", "modulename": "aiochris", "qualname": "ChrisAdminClient.create_compute_resource", "kind": "function", "doc": "

Define a new compute resource.

\n", "signature": "(\tself,\tname: Union[str, aiochris.types.ComputeResourceName],\tcompute_url: Union[str, aiochris.types.PfconUrl],\tcompute_user: str,\tcompute_password: str,\tdescription: str = None,\tcompute_auth_url: str = None,\tcompute_auth_token: str = None,\tmax_job_exec_seconds: str = None) -> aiochris.models.public.ComputeResource:", "funcdef": "async def"}, "aiochris.Search": {"fullname": "aiochris.Search", "modulename": "aiochris", "qualname": "Search", "kind": "class", "doc": "

Abstraction over paginated collection responses from CUBE.\nSearch objects are returned by methods for search endpoints of the CUBE API.\nIt is an asynchronous iterable\nwhich produces items from responses that return multiple results.\nHTTP requests are fired as-neede, they happen in the background during iteration.\nNo request is made before the first time a Search object is called.

\n\n
\n\n
Pagination is handled internally and automatically.
\n\n

The query parameters limit and offset can be explicitly given, but they shouldn't.

\n\n
\n\n
Examples
\n\n

Use an async for loop to print the name of every feed:

\n\n
\n
all_feeds = chris.search_feeds()  # returns a Search[Feed]\nasync for feed in all_feeds:\n    print(feed.name)\n
\n
\n", "bases": "typing.Generic[~T], typing.AsyncIterable[~T]"}, "aiochris.Search.__init__": {"fullname": "aiochris.Search.__init__", "modulename": "aiochris", "qualname": "Search.__init__", "kind": "function", "doc": "

\n", "signature": "(\tbase_url: str,\tparams: dict[str, typing.Any],\tclient: aiochris.link.linked.Linked,\tItem: Type[~T],\tmax_requests: int = 100,\tsubpath: str = 'search/')"}, "aiochris.Search.first": {"fullname": "aiochris.Search.first", "modulename": "aiochris", "qualname": "Search.first", "kind": "function", "doc": "

Get the first item.

\n\n
See also
\n\n

get_only : similar use, but more strict

\n", "signature": "(self) -> Optional[~T]:", "funcdef": "async def"}, "aiochris.Search.get_only": {"fullname": "aiochris.Search.get_only", "modulename": "aiochris", "qualname": "Search.get_only", "kind": "function", "doc": "

Get the only item from a search with one result.

\n\n
Examples
\n\n

This method is very commonly used for getting \"one thing\" from CUBE.

\n\n
\n
await chris.search_plugins(name_exact="pl-dircopy", version="2.1.1").get_only()\n
\n
\n\n

In the example above, a search for plugins given (name_exact, version)\nis guaranteed to return either 0 or 1 result.

\n\n
Raises
\n\n\n\n
See also
\n\n

first : does the same thing but without checks.

\n\n
Parameters
\n\n\n", "signature": "(self, allow_multiple=False) -> ~T:", "funcdef": "async def"}, "aiochris.Search.count": {"fullname": "aiochris.Search.count", "modulename": "aiochris", "qualname": "Search.count", "kind": "function", "doc": "

Get the number of items in this collection search.

\n\n
Examples
\n\n

count is useful for rendering a progress bar. TODO example with files

\n", "signature": "(self) -> int:", "funcdef": "async def"}, "aiochris.acollect": {"fullname": "aiochris.acollect", "modulename": "aiochris", "qualname": "acollect", "kind": "function", "doc": "

Simple helper to convert a Search to a list.

\n\n

Using this function is not recommended unless you can assume the collection is small.

\n", "signature": "(async_iterable: AsyncIterable[~T]) -> list[~T]:", "funcdef": "async def"}, "aiochris.Status": {"fullname": "aiochris.Status", "modulename": "aiochris", "qualname": "Status", "kind": "class", "doc": "

Possible statuses of a plugin instance.

\n", "bases": "enum.Enum"}, "aiochris.Status.created": {"fullname": "aiochris.Status.created", "modulename": "aiochris", "qualname": "Status.created", "kind": "variable", "doc": "

\n", "default_value": " = <Status.created: 'created'>"}, "aiochris.Status.waiting": {"fullname": "aiochris.Status.waiting", "modulename": "aiochris", "qualname": "Status.waiting", "kind": "variable", "doc": "

\n", "default_value": " = <Status.waiting: 'waiting'>"}, "aiochris.Status.scheduled": {"fullname": "aiochris.Status.scheduled", "modulename": "aiochris", "qualname": "Status.scheduled", "kind": "variable", "doc": "

\n", "default_value": " = <Status.scheduled: 'scheduled'>"}, "aiochris.Status.started": {"fullname": "aiochris.Status.started", "modulename": "aiochris", "qualname": "Status.started", "kind": "variable", "doc": "

\n", "default_value": " = <Status.started: 'started'>"}, "aiochris.Status.registeringFiles": {"fullname": "aiochris.Status.registeringFiles", "modulename": "aiochris", "qualname": "Status.registeringFiles", "kind": "variable", "doc": "

\n", "default_value": " = <Status.registeringFiles: 'registeringFiles'>"}, "aiochris.Status.finishedSuccessfully": {"fullname": "aiochris.Status.finishedSuccessfully", "modulename": "aiochris", "qualname": "Status.finishedSuccessfully", "kind": "variable", "doc": "

\n", "default_value": " = <Status.finishedSuccessfully: 'finishedSuccessfully'>"}, "aiochris.Status.finishedWithError": {"fullname": "aiochris.Status.finishedWithError", "modulename": "aiochris", "qualname": "Status.finishedWithError", "kind": "variable", "doc": "

\n", "default_value": " = <Status.finishedWithError: 'finishedWithError'>"}, "aiochris.Status.cancelled": {"fullname": "aiochris.Status.cancelled", "modulename": "aiochris", "qualname": "Status.cancelled", "kind": "variable", "doc": "

\n", "default_value": " = <Status.cancelled: 'cancelled'>"}, "aiochris.ParameterTypeName": {"fullname": "aiochris.ParameterTypeName", "modulename": "aiochris", "qualname": "ParameterTypeName", "kind": "class", "doc": "

Plugin parameter types.

\n", "bases": "enum.Enum"}, "aiochris.ParameterTypeName.string": {"fullname": "aiochris.ParameterTypeName.string", "modulename": "aiochris", "qualname": "ParameterTypeName.string", "kind": "variable", "doc": "

\n", "default_value": " = <ParameterTypeName.string: 'string'>"}, "aiochris.ParameterTypeName.integer": {"fullname": "aiochris.ParameterTypeName.integer", "modulename": "aiochris", "qualname": "ParameterTypeName.integer", "kind": "variable", "doc": "

\n", "default_value": " = <ParameterTypeName.integer: 'integer'>"}, "aiochris.ParameterTypeName.float": {"fullname": "aiochris.ParameterTypeName.float", "modulename": "aiochris", "qualname": "ParameterTypeName.float", "kind": "variable", "doc": "

\n", "default_value": " = <ParameterTypeName.float: 'float'>"}, "aiochris.ParameterTypeName.boolean": {"fullname": "aiochris.ParameterTypeName.boolean", "modulename": "aiochris", "qualname": "ParameterTypeName.boolean", "kind": "variable", "doc": "

\n", "default_value": " = <ParameterTypeName.boolean: 'boolean'>"}, "aiochris.client": {"fullname": "aiochris.client", "modulename": "aiochris.client", "kind": "module", "doc": "

\n"}, "aiochris.client.admin": {"fullname": "aiochris.client.admin", "modulename": "aiochris.client.admin", "kind": "module", "doc": "

\n"}, "aiochris.client.admin.ChrisAdminClient": {"fullname": "aiochris.client.admin.ChrisAdminClient", "modulename": "aiochris.client.admin", "qualname": "ChrisAdminClient", "kind": "class", "doc": "

A client who has access to /chris-admin/. Admins can register new plugins and\nadd new compute resources.

\n", "bases": "aiochris.client.authed.AuthenticatedClient[aiochris.models.collection_links.AdminCollectionLinks, 'ChrisAdminClient']"}, "aiochris.client.admin.ChrisAdminClient.register_plugin_from_store": {"fullname": "aiochris.client.admin.ChrisAdminClient.register_plugin_from_store", "modulename": "aiochris.client.admin", "qualname": "ChrisAdminClient.register_plugin_from_store", "kind": "function", "doc": "

Register a plugin from a ChRIS Store.

\n", "signature": "(\tself,\tplugin_store_url: aiochris.types.PluginUrl,\tcompute_names: Iterable[aiochris.types.ComputeResourceName]) -> aiochris.models.logged_in.Plugin:", "funcdef": "async def"}, "aiochris.client.admin.ChrisAdminClient.add_plugin": {"fullname": "aiochris.client.admin.ChrisAdminClient.add_plugin", "modulename": "aiochris.client.admin", "qualname": "ChrisAdminClient.add_plugin", "kind": "function", "doc": "

Add a plugin to CUBE.

\n\n
Examples
\n\n
\n
cmd = ['docker', 'run', '--rm', 'fnndsc/pl-mri-preview', 'chris_plugin_info']\noutput = subprocess.check_output(cmd, text=True)\ndesc = json.loads(output)\ndesc['name'] = 'pl-mri-preview'\ndesc['public_repo'] = 'https://github.com/FNNDSC/pl-mri-preview'\ndesc['dock_image'] = 'fnndsc/pl-mri-preview'\n\nawait chris_admin.add_plugin(plugin_description=desc, compute_resources='host')\n
\n
\n\n

The example above is just for show. It's not a good example for several reasons:

\n\n\n\n
\n
all_computes = await chris_admin.get_all_compute_resources()\nawait chris_admin.add_plugin(plugin_description=desc, compute_resources=all_computes)\n
\n
\n\n
Parameters
\n\n\n", "signature": "(\tself,\tplugin_description: str | dict,\tcompute_resources: Union[str, aiochris.models.public.ComputeResource, Iterable[Union[aiochris.models.public.ComputeResource, aiochris.types.ComputeResourceName]]]) -> aiochris.models.logged_in.Plugin:", "funcdef": "async def"}, "aiochris.client.admin.ChrisAdminClient.create_compute_resource": {"fullname": "aiochris.client.admin.ChrisAdminClient.create_compute_resource", "modulename": "aiochris.client.admin", "qualname": "ChrisAdminClient.create_compute_resource", "kind": "function", "doc": "

Define a new compute resource.

\n", "signature": "(\tself,\tname: Union[str, aiochris.types.ComputeResourceName],\tcompute_url: Union[str, aiochris.types.PfconUrl],\tcompute_user: str,\tcompute_password: str,\tdescription: str = None,\tcompute_auth_url: str = None,\tcompute_auth_token: str = None,\tmax_job_exec_seconds: str = None) -> aiochris.models.public.ComputeResource:", "funcdef": "async def"}, "aiochris.client.anon": {"fullname": "aiochris.client.anon", "modulename": "aiochris.client.anon", "kind": "module", "doc": "

\n"}, "aiochris.client.anon.AnonChrisClient": {"fullname": "aiochris.client.anon.AnonChrisClient", "modulename": "aiochris.client.anon", "qualname": "AnonChrisClient", "kind": "class", "doc": "

An anonymous ChRIS client. It has access to read-only GET resources,\nsuch as being able to search for plugins.

\n", "bases": "aiochris.client.base.BaseChrisClient[aiochris.models.collection_links.AnonymousCollectionLinks, 'AnonChrisClient']"}, "aiochris.client.anon.AnonChrisClient.from_url": {"fullname": "aiochris.client.anon.AnonChrisClient.from_url", "modulename": "aiochris.client.anon", "qualname": "AnonChrisClient.from_url", "kind": "function", "doc": "

Create an anonymous client.

\n\n

See aiochris.client.base.BaseChrisClient.new for parameter documentation.

\n", "signature": "(\tcls,\turl: str,\tmax_search_requests: int = 100,\tconnector: Optional[aiohttp.connector.BaseConnector] = None,\tconnector_owner: bool = True) -> aiochris.client.anon.AnonChrisClient:", "funcdef": "async def"}, "aiochris.client.anon.AnonChrisClient.search_plugins": {"fullname": "aiochris.client.anon.AnonChrisClient.search_plugins", "modulename": "aiochris.client.anon", "qualname": "AnonChrisClient.search_plugins", "kind": "function", "doc": "

Search for plugins.

\n\n

Since this client is not logged in, you cannot create plugin instances using this client.

\n", "signature": "(\tself,\t**query) -> aiochris.util.search.Search[aiochris.models.public.PublicPlugin]:", "funcdef": "def"}, "aiochris.client.authed": {"fullname": "aiochris.client.authed", "modulename": "aiochris.client.authed", "kind": "module", "doc": "

\n"}, "aiochris.client.authed.AuthenticatedClient": {"fullname": "aiochris.client.authed.AuthenticatedClient", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient", "kind": "class", "doc": "

An authenticated ChRIS client.

\n", "bases": "aiochris.client.base.BaseChrisClient[~L, ~CSelf], typing.Generic[~L, ~CSelf], abc.ABC"}, "aiochris.client.authed.AuthenticatedClient.from_login": {"fullname": "aiochris.client.authed.AuthenticatedClient.from_login", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.from_login", "kind": "function", "doc": "

Get authentication token using username and password, then construct the client.

\n\n

See aiochris.client.base.BaseChrisClient.new for parameter documentation.

\n", "signature": "(\tcls,\turl: Union[str, aiochris.types.ChrisURL],\tusername: Union[str, aiochris.types.Username],\tpassword: Union[str, aiochris.types.Password],\tmax_search_requests: int = 100,\tconnector: Optional[aiohttp.connector.TCPConnector] = None,\tconnector_owner: bool = True) -> ~CSelf:", "funcdef": "async def"}, "aiochris.client.authed.AuthenticatedClient.from_token": {"fullname": "aiochris.client.authed.AuthenticatedClient.from_token", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.from_token", "kind": "function", "doc": "

Construct an authenticated client using the given token.

\n\n

See aiochris.client.base.BaseChrisClient.new for parameter documentation.

\n", "signature": "(\tcls,\turl: Union[str, aiochris.types.ChrisURL],\ttoken: str,\tmax_search_requests: int = 100,\tconnector: Optional[aiohttp.connector.TCPConnector] = None,\tconnector_owner: Optional[bool] = True) -> ~CSelf:", "funcdef": "async def"}, "aiochris.client.authed.AuthenticatedClient.from_chrs": {"fullname": "aiochris.client.authed.AuthenticatedClient.from_chrs", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.from_chrs", "kind": "function", "doc": "

Log in using chrs.\nChRIS logins can be saved with the chrs login command.

\n\n

In order to call this function, aiochris must be installed with the extras from-chrs.\nUsing pip:

\n\n
\n
pip install aiochris[chrs]\n
\n
\n\n

Or using Poetry:

\n\n
\n
poetry add -E chrs aiochris\n
\n
\n\n

from_chrs makes it easy to use aiochris in Jupyter Notebook or IPython,\nespecially since it saves you from having to write your password in a notebook\nthat you want to share with others. Both Jupyter and IPython support top-level await.

\n\n
\n
from aiochris import ChrisClient, acollect\n\nchris = await ChrisClient.from_chrs()\nawait acollect(chris.search_plugins())\n
\n
\n\n

When from_chrs is called with no parameters, it uses the \"preferred account\"\ni.e. the most recently added account, the same _ChRIS_ account and server as\nchrs would when called without options. The \"preferred account\" can be changed\nby running chrs switch.

\n", "signature": "(\tcls,\turl: Union[str, aiochris.types.ChrisURL, NoneType] = None,\tusername: Union[str, aiochris.types.Username, NoneType] = None,\tmax_search_requests: int = 100,\tconnector: Optional[aiohttp.connector.TCPConnector] = None,\tconnector_owner: Optional[bool] = True,\tconfig_file: pathlib.Path = PosixPath('~/.config/chrs/login.toml')) -> ~CSelf:", "funcdef": "async def"}, "aiochris.client.authed.AuthenticatedClient.search_feeds": {"fullname": "aiochris.client.authed.AuthenticatedClient.search_feeds", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.search_feeds", "kind": "function", "doc": "

Search for feeds.

\n", "signature": "(\tself,\t**query) -> aiochris.util.search.Search[aiochris.models.logged_in.Feed]:", "funcdef": "def"}, "aiochris.client.authed.AuthenticatedClient.search_plugins": {"fullname": "aiochris.client.authed.AuthenticatedClient.search_plugins", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.search_plugins", "kind": "function", "doc": "

Search for plugins.

\n", "signature": "(\tself,\t**query) -> aiochris.util.search.Search[aiochris.models.logged_in.Plugin]:", "funcdef": "def"}, "aiochris.client.authed.AuthenticatedClient.plugin_instances": {"fullname": "aiochris.client.authed.AuthenticatedClient.plugin_instances", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.plugin_instances", "kind": "function", "doc": "

Search for plugin instances.

\n", "signature": "(\tself,\t**query) -> aiochris.util.search.Search[aiochris.models.logged_in.PluginInstance]:", "funcdef": "def"}, "aiochris.client.authed.AuthenticatedClient.upload_file": {"fullname": "aiochris.client.authed.AuthenticatedClient.upload_file", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.upload_file", "kind": "function", "doc": "

Upload a local file to ChRIS.

\n\n
\n\n
Uses non-async code.
\n\n

The file is read using non-async code.\nPerformance will suffer with large files and hard drives.\nSee aiolibs/aiohttp#7174

\n\n
\n\n
Examples
\n\n

Upload a single file:

\n\n
\n
aiochris = await ChrisClient.from_login(\n    username='chris',\n    password='chris1234',\n    url='https://cube.chrisproject.org/api/v1/'\n)\nfile = await aiochris.upload_file("./my_data.dat", 'dir/my_data.dat')\nassert file.fname == 'aiochris/uploads/dir/my_data.dat'\n
\n
\n\n

Upload (in parallel) all *.txt files in a directory\n'incoming' to aiochris/uploads/big_folder:

\n\n
\n
upload_jobs = (\n    aiochris.upload_file(p, f'big_folder/{p}')\n    for p in Path('incoming')\n)\nawait asyncio.gather(upload_jobs)\n
\n
\n\n
Parameters
\n\n\n", "signature": "(\tself,\tlocal_file: str | os.PathLike,\tupload_path: str) -> aiochris.models.logged_in.File:", "funcdef": "async def"}, "aiochris.client.authed.AuthenticatedClient.user": {"fullname": "aiochris.client.authed.AuthenticatedClient.user", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.user", "kind": "function", "doc": "

Gets the user's information.

\n", "signature": "(self) -> aiochris.models.logged_in.User:", "funcdef": "async def"}, "aiochris.client.authed.AuthenticatedClient.username": {"fullname": "aiochris.client.authed.AuthenticatedClient.username", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.username", "kind": "function", "doc": "

Gets the username. In contrast to self.user, this method will use a cached API call.

\n", "signature": "(self) -> aiochris.types.Username:", "funcdef": "async def"}, "aiochris.client.authed.AuthenticatedClient.search_compute_resources": {"fullname": "aiochris.client.authed.AuthenticatedClient.search_compute_resources", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.search_compute_resources", "kind": "function", "doc": "

Search for existing compute resources.

\n\n
See also
\n\n

get_all_compute_resources :

\n", "signature": "(\tself,\t**query) -> aiochris.util.search.Search[aiochris.models.public.ComputeResource]:", "funcdef": "def"}, "aiochris.client.authed.AuthenticatedClient.get_all_compute_resources": {"fullname": "aiochris.client.authed.AuthenticatedClient.get_all_compute_resources", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.get_all_compute_resources", "kind": "function", "doc": "

Get all compute resources.

\n\n

This method exists for convenience.\nThe number of compute resources of a CUBE is typically small so it's ok.

\n\n
See also
\n\n

search_compute_resources :

\n", "signature": "(self) -> Sequence[aiochris.models.public.ComputeResource]:", "funcdef": "async def"}, "aiochris.client.authed.AuthenticatedClient.search_pacsfiles": {"fullname": "aiochris.client.authed.AuthenticatedClient.search_pacsfiles", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.search_pacsfiles", "kind": "function", "doc": "

Search for PACS files.

\n", "signature": "(\tself,\t**query) -> aiochris.util.search.Search[aiochris.models.logged_in.PACSFile]:", "funcdef": "def"}, "aiochris.client.base": {"fullname": "aiochris.client.base", "modulename": "aiochris.client.base", "kind": "module", "doc": "

\n"}, "aiochris.client.base.BaseChrisClient": {"fullname": "aiochris.client.base.BaseChrisClient", "modulename": "aiochris.client.base", "qualname": "BaseChrisClient", "kind": "class", "doc": "

Provides the implementation for most of the read-only GET resources of ChRIS\nand functions related to the client object's own usage.

\n", "bases": "typing.Generic[~L, ~CSelf], aiochris.link.collection_client.CollectionJsonApiClient[~L], typing.AsyncContextManager[~CSelf], abc.ABC"}, "aiochris.client.base.BaseChrisClient.new": {"fullname": "aiochris.client.base.BaseChrisClient.new", "modulename": "aiochris.client.base", "qualname": "BaseChrisClient.new", "kind": "function", "doc": "

A constructor which creates the session for the BaseChrisClient\nand makes an initial request to populate collection_links.

\n\n
Parameters
\n\n\n", "signature": "(\tcls,\turl: str,\tmax_search_requests: int = 100,\tconnector: Optional[aiohttp.connector.BaseConnector] = None,\tconnector_owner: bool = True,\tsession_modifier: Optional[Callable[[aiohttp.client.ClientSession], NoneType]] = None) -> ~CSelf:", "funcdef": "async def"}, "aiochris.client.base.BaseChrisClient.close": {"fullname": "aiochris.client.base.BaseChrisClient.close", "modulename": "aiochris.client.base", "qualname": "BaseChrisClient.close", "kind": "function", "doc": "

Close the HTTP session used by this client.

\n", "signature": "(self):", "funcdef": "async def"}, "aiochris.client.base.BaseChrisClient.search_plugins": {"fullname": "aiochris.client.base.BaseChrisClient.search_plugins", "modulename": "aiochris.client.base", "qualname": "BaseChrisClient.search_plugins", "kind": "function", "doc": "

Search for plugins.

\n", "signature": "(\tself,\t**query) -> aiochris.util.search.Search[aiochris.models.public.PublicPlugin]:", "funcdef": "def"}, "aiochris.client.from_chrs": {"fullname": "aiochris.client.from_chrs", "modulename": "aiochris.client.from_chrs", "kind": "module", "doc": "

Interoperability with chrs version 0.2.4.

\n\n

The functions of this module uses dynamic importing of extras from the chrs group.

\n"}, "aiochris.client.from_chrs.StoredToken": {"fullname": "aiochris.client.from_chrs.StoredToken", "modulename": "aiochris.client.from_chrs", "qualname": "StoredToken", "kind": "class", "doc": "

https://github.com/FNNDSC/chrs/blob/v0.2.4/chrs/src/login/tokenstore.rs#L18-L24

\n"}, "aiochris.client.from_chrs.StoredToken.__init__": {"fullname": "aiochris.client.from_chrs.StoredToken.__init__", "modulename": "aiochris.client.from_chrs", "qualname": "StoredToken.__init__", "kind": "function", "doc": "

\n", "signature": "(store: Literal['Text', 'Keyring'], value: Optional[str] = None)"}, "aiochris.client.from_chrs.ChrsLogin": {"fullname": "aiochris.client.from_chrs.ChrsLogin", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogin", "kind": "class", "doc": "

A login saved by chrs.

\n\n

https://github.com/FNNDSC/chrs/blob/v0.2.4/chrs/src/login/tokenstore.rs#L18-L34

\n"}, "aiochris.client.from_chrs.ChrsLogin.__init__": {"fullname": "aiochris.client.from_chrs.ChrsLogin.__init__", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogin.__init__", "kind": "function", "doc": "

\n", "signature": "(\taddress: aiochris.types.ChrisURL,\tusername: aiochris.types.Username,\tstore: aiochris.client.from_chrs.StoredToken)"}, "aiochris.client.from_chrs.ChrsLogin.token": {"fullname": "aiochris.client.from_chrs.ChrsLogin.token", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogin.token", "kind": "function", "doc": "

\n", "signature": "(self) -> str:", "funcdef": "def"}, "aiochris.client.from_chrs.ChrsLogin.is_for": {"fullname": "aiochris.client.from_chrs.ChrsLogin.is_for", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogin.is_for", "kind": "function", "doc": "

Returns True if this login is for the specified _ChRIS_ user account.

\n", "signature": "(\tself,\taddress: Optional[aiochris.types.ChrisURL],\tusername: Optional[aiochris.types.Username]) -> bool:", "funcdef": "def"}, "aiochris.client.from_chrs.ChrsLogin.to_keyring_username": {"fullname": "aiochris.client.from_chrs.ChrsLogin.to_keyring_username", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogin.to_keyring_username", "kind": "function", "doc": "

Produce the username for this login in the keyring.

\n\n

https://github.com/FNNDSC/chrs/blob/v0.2.4/chrs/src/login/tokenstore.rs#L3

\n", "signature": "(self) -> str:", "funcdef": "def"}, "aiochris.client.from_chrs.ChrsLogins": {"fullname": "aiochris.client.from_chrs.ChrsLogins", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogins", "kind": "class", "doc": "

Logins saved by chrs.

\n\n

https://github.com/FNNDSC/chrs/blob/v0.2.4/chrs/src/login/saved.rs#L18-L22

\n"}, "aiochris.client.from_chrs.ChrsLogins.__init__": {"fullname": "aiochris.client.from_chrs.ChrsLogins.__init__", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogins.__init__", "kind": "function", "doc": "

\n", "signature": "(cubes: list[aiochris.client.from_chrs.ChrsLogin])"}, "aiochris.client.from_chrs.ChrsLogins.cubes": {"fullname": "aiochris.client.from_chrs.ChrsLogins.cubes", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogins.cubes", "kind": "variable", "doc": "

Saved logins in reverse order of preference.

\n", "annotation": ": list[aiochris.client.from_chrs.ChrsLogin]"}, "aiochris.client.from_chrs.ChrsLogins.load": {"fullname": "aiochris.client.from_chrs.ChrsLogins.load", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogins.load", "kind": "function", "doc": "

\n", "signature": "(cls, path: pathlib.Path) -> aiochris.client.from_chrs.ChrsLogins:", "funcdef": "def"}, "aiochris.client.from_chrs.ChrsLogins.get_token_for": {"fullname": "aiochris.client.from_chrs.ChrsLogins.get_token_for", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogins.get_token_for", "kind": "function", "doc": "

Get token for a login.

\n", "signature": "(\tself,\taddress: Union[str, aiochris.types.ChrisURL, NoneType] = None,\tusername: Union[str, aiochris.types.Username, NoneType] = None) -> Optional[tuple[aiochris.types.ChrisURL, str]]:", "funcdef": "def"}, "aiochris.client.from_chrs.ChrsKeyringError": {"fullname": "aiochris.client.from_chrs.ChrsKeyringError", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsKeyringError", "kind": "class", "doc": "

Error interacting with Keyring.

\n", "bases": "builtins.Exception"}, "aiochris.client.normal": {"fullname": "aiochris.client.normal", "modulename": "aiochris.client.normal", "kind": "module", "doc": "

\n"}, "aiochris.client.normal.ChrisClient": {"fullname": "aiochris.client.normal.ChrisClient", "modulename": "aiochris.client.normal", "qualname": "ChrisClient", "kind": "class", "doc": "

A normal user ChRIS client, who may upload files and create plugin instances.

\n", "bases": "aiochris.client.authed.AuthenticatedClient[aiochris.models.collection_links.CollectionLinks, 'ChrisClient']"}, "aiochris.client.normal.ChrisClient.create_user": {"fullname": "aiochris.client.normal.ChrisClient.create_user", "modulename": "aiochris.client.normal", "qualname": "ChrisClient.create_user", "kind": "function", "doc": "

\n", "signature": "(\tcls,\turl: Union[aiochris.types.ChrisURL, str],\tusername: Union[aiochris.types.Username, str],\tpassword: Union[aiochris.types.Password, str],\temail: str,\tsession: Optional[aiohttp.client.ClientSession] = None) -> aiochris.models.data.UserData:", "funcdef": "async def"}, "aiochris.errors": {"fullname": "aiochris.errors", "modulename": "aiochris.errors", "kind": "module", "doc": "

\n"}, "aiochris.errors.raise_for_status": {"fullname": "aiochris.errors.raise_for_status", "modulename": "aiochris.errors", "qualname": "raise_for_status", "kind": "function", "doc": "

Raises custom exceptions.

\n", "signature": "(res: aiohttp.client_reqrep.ClientResponse) -> None:", "funcdef": "async def"}, "aiochris.errors.BaseClientError": {"fullname": "aiochris.errors.BaseClientError", "modulename": "aiochris.errors", "qualname": "BaseClientError", "kind": "class", "doc": "

Common base class for all non-exit exceptions.

\n", "bases": "builtins.Exception"}, "aiochris.errors.ResponseError": {"fullname": "aiochris.errors.ResponseError", "modulename": "aiochris.errors", "qualname": "ResponseError", "kind": "class", "doc": "

Common base class for all non-exit exceptions.

\n", "bases": "BaseClientError"}, "aiochris.errors.BadRequestError": {"fullname": "aiochris.errors.BadRequestError", "modulename": "aiochris.errors", "qualname": "BadRequestError", "kind": "class", "doc": "

Common base class for all non-exit exceptions.

\n", "bases": "ResponseError"}, "aiochris.errors.InternalServerError": {"fullname": "aiochris.errors.InternalServerError", "modulename": "aiochris.errors", "qualname": "InternalServerError", "kind": "class", "doc": "

Common base class for all non-exit exceptions.

\n", "bases": "ResponseError"}, "aiochris.errors.IncorrectLoginError": {"fullname": "aiochris.errors.IncorrectLoginError", "modulename": "aiochris.errors", "qualname": "IncorrectLoginError", "kind": "class", "doc": "

Common base class for all non-exit exceptions.

\n", "bases": "BaseClientError"}, "aiochris.errors.NonsenseResponseError": {"fullname": "aiochris.errors.NonsenseResponseError", "modulename": "aiochris.errors", "qualname": "NonsenseResponseError", "kind": "class", "doc": "

CUBE returned data which does not make sense.

\n", "bases": "ResponseError"}, "aiochris.models": {"fullname": "aiochris.models", "modulename": "aiochris.models", "kind": "module", "doc": "

\n"}, "aiochris.models.collection_links": {"fullname": "aiochris.models.collection_links", "modulename": "aiochris.models.collection_links", "kind": "module", "doc": "

\n"}, "aiochris.models.collection_links.AbstractCollectionLinks": {"fullname": "aiochris.models.collection_links.AbstractCollectionLinks", "modulename": "aiochris.models.collection_links", "qualname": "AbstractCollectionLinks", "kind": "class", "doc": "

\n"}, "aiochris.models.collection_links.AbstractCollectionLinks.__init__": {"fullname": "aiochris.models.collection_links.AbstractCollectionLinks.__init__", "modulename": "aiochris.models.collection_links", "qualname": "AbstractCollectionLinks.__init__", "kind": "function", "doc": "

\n", "signature": "()"}, "aiochris.models.collection_links.AbstractCollectionLinks.has_field": {"fullname": "aiochris.models.collection_links.AbstractCollectionLinks.has_field", "modulename": "aiochris.models.collection_links", "qualname": "AbstractCollectionLinks.has_field", "kind": "function", "doc": "

\n", "signature": "(cls, field_name: str) -> bool:", "funcdef": "def"}, "aiochris.models.collection_links.AbstractCollectionLinks.get": {"fullname": "aiochris.models.collection_links.AbstractCollectionLinks.get", "modulename": "aiochris.models.collection_links", "qualname": "AbstractCollectionLinks.get", "kind": "function", "doc": "

\n", "signature": "(self, collection_name: str) -> str:", "funcdef": "def"}, "aiochris.models.collection_links.AnonymousCollectionLinks": {"fullname": "aiochris.models.collection_links.AnonymousCollectionLinks", "modulename": "aiochris.models.collection_links", "qualname": "AnonymousCollectionLinks", "kind": "class", "doc": "

\n", "bases": "AbstractCollectionLinks"}, "aiochris.models.collection_links.AnonymousCollectionLinks.__init__": {"fullname": "aiochris.models.collection_links.AnonymousCollectionLinks.__init__", "modulename": "aiochris.models.collection_links", "qualname": "AnonymousCollectionLinks.__init__", "kind": "function", "doc": "

\n", "signature": "(\tchrisinstance: aiochris.types.ApiUrl,\tfiles: aiochris.types.ApiUrl,\tcompute_resources: aiochris.types.ApiUrl,\tplugin_metas: aiochris.types.ApiUrl,\tplugins: aiochris.types.ApiUrl,\tplugin_instances: aiochris.types.ApiUrl,\tpipelines: aiochris.types.ApiUrl,\tpipeline_instances: aiochris.types.ApiUrl,\tworkflows: aiochris.types.ApiUrl,\ttags: aiochris.types.ApiUrl,\tuploadedfiles: aiochris.types.ApiUrl,\tpacsfiles: aiochris.types.ApiUrl,\tservicefiles: aiochris.types.ApiUrl,\tfilebrowser: aiochris.types.ApiUrl)"}, "aiochris.models.collection_links.CollectionLinks": {"fullname": "aiochris.models.collection_links.CollectionLinks", "modulename": "aiochris.models.collection_links", "qualname": "CollectionLinks", "kind": "class", "doc": "

\n", "bases": "AnonymousCollectionLinks"}, "aiochris.models.collection_links.CollectionLinks.__init__": {"fullname": "aiochris.models.collection_links.CollectionLinks.__init__", "modulename": "aiochris.models.collection_links", "qualname": "CollectionLinks.__init__", "kind": "function", "doc": "

\n", "signature": "(\tchrisinstance: aiochris.types.ApiUrl,\tfiles: aiochris.types.ApiUrl,\tcompute_resources: aiochris.types.ApiUrl,\tplugin_metas: aiochris.types.ApiUrl,\tplugins: aiochris.types.ApiUrl,\tplugin_instances: aiochris.types.ApiUrl,\tpipelines: aiochris.types.ApiUrl,\tpipeline_instances: aiochris.types.ApiUrl,\tworkflows: aiochris.types.ApiUrl,\ttags: aiochris.types.ApiUrl,\tuploadedfiles: aiochris.types.ApiUrl,\tpacsfiles: aiochris.types.ApiUrl,\tservicefiles: aiochris.types.ApiUrl,\tfilebrowser: aiochris.types.ApiUrl,\tuser: aiochris.types.UserUrl)"}, "aiochris.models.collection_links.AdminCollectionLinks": {"fullname": "aiochris.models.collection_links.AdminCollectionLinks", "modulename": "aiochris.models.collection_links", "qualname": "AdminCollectionLinks", "kind": "class", "doc": "

\n", "bases": "CollectionLinks"}, "aiochris.models.collection_links.AdminCollectionLinks.__init__": {"fullname": "aiochris.models.collection_links.AdminCollectionLinks.__init__", "modulename": "aiochris.models.collection_links", "qualname": "AdminCollectionLinks.__init__", "kind": "function", "doc": "

\n", "signature": "(\tchrisinstance: aiochris.types.ApiUrl,\tfiles: aiochris.types.ApiUrl,\tcompute_resources: aiochris.types.ApiUrl,\tplugin_metas: aiochris.types.ApiUrl,\tplugins: aiochris.types.ApiUrl,\tplugin_instances: aiochris.types.ApiUrl,\tpipelines: aiochris.types.ApiUrl,\tpipeline_instances: aiochris.types.ApiUrl,\tworkflows: aiochris.types.ApiUrl,\ttags: aiochris.types.ApiUrl,\tuploadedfiles: aiochris.types.ApiUrl,\tpacsfiles: aiochris.types.ApiUrl,\tservicefiles: aiochris.types.ApiUrl,\tfilebrowser: aiochris.types.ApiUrl,\tuser: aiochris.types.UserUrl,\tadmin: aiochris.types.AdminUrl)"}, "aiochris.models.collection_links.AdminApiCollectionLinks": {"fullname": "aiochris.models.collection_links.AdminApiCollectionLinks", "modulename": "aiochris.models.collection_links", "qualname": "AdminApiCollectionLinks", "kind": "class", "doc": "

\n", "bases": "AbstractCollectionLinks"}, "aiochris.models.collection_links.AdminApiCollectionLinks.__init__": {"fullname": "aiochris.models.collection_links.AdminApiCollectionLinks.__init__", "modulename": "aiochris.models.collection_links", "qualname": "AdminApiCollectionLinks.__init__", "kind": "function", "doc": "

\n", "signature": "(compute_resources: aiochris.types.ApiUrl)"}, "aiochris.models.data": {"fullname": "aiochris.models.data", "modulename": "aiochris.models.data", "kind": "module", "doc": "

Dataclasses describing objects returned from CUBE.

\n\n

These classes are extended in the modules aiochris.models.logged_in\nand aiochris.models.public with methods to get objects from links.

\n"}, "aiochris.models.data.UserData": {"fullname": "aiochris.models.data.UserData", "modulename": "aiochris.models.data", "qualname": "UserData", "kind": "class", "doc": "

A CUBE user.

\n"}, "aiochris.models.data.UserData.__init__": {"fullname": "aiochris.models.data.UserData.__init__", "modulename": "aiochris.models.data", "qualname": "UserData.__init__", "kind": "function", "doc": "

\n", "signature": "(\turl: aiochris.types.UserUrl,\tid: aiochris.types.UserId,\tusername: aiochris.types.Username,\temail: str)"}, "aiochris.models.data.PluginInstanceData": {"fullname": "aiochris.models.data.PluginInstanceData", "modulename": "aiochris.models.data", "qualname": "PluginInstanceData", "kind": "class", "doc": "

A plugin instance in _ChRIS_ is a computing job, i.e. an attempt to run\na computation (a non-interactive command-line app) to produce data.

\n", "bases": "aiochris.link.linked.LinkedModel"}, "aiochris.models.data.PluginInstanceData.__init__": {"fullname": "aiochris.models.data.PluginInstanceData.__init__", "modulename": "aiochris.models.data", "qualname": "PluginInstanceData.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.PluginInstanceUrl,\tid: aiochris.types.PluginInstanceId,\ttitle: str,\tcompute_resource_name: aiochris.types.ComputeResourceName,\tplugin_id: aiochris.types.PluginId,\tplugin_name: aiochris.types.PluginName,\tplugin_version: aiochris.types.PluginVersion,\tplugin_type: aiochris.enums.PluginType,\tpipeline_inst: Optional[int],\tfeed_id: aiochris.types.FeedId,\tstart_date: datetime.datetime,\tend_date: datetime.datetime,\toutput_path: aiochris.types.CubeFilePath,\tstatus: aiochris.enums.Status,\tsummary: str,\traw: str,\towner_username: aiochris.types.Username,\tcpu_limit: int,\tmemory_limit: int,\tnumber_of_workers: int,\tgpu_limit: int,\terror_code: aiochris.types.CUBEErrorCode,\tprevious: Optional[aiochris.types.PluginInstanceUrl],\tfeed: aiochris.types.FeedUrl,\tplugin: aiochris.types.PluginUrl,\tdescendants: aiochris.types.DescendantsUrl,\tfiles: aiochris.types.FilesUrl,\tparameters: aiochris.types.PluginInstanceParametersUrl,\tcompute_resource: aiochris.types.ComputeResourceUrl,\tsplits: aiochris.types.SplitsUrl,\tprevious_id: Optional[int] = None,\tsize: Optional[int] = None,\ttemplate: Optional[dict] = None)"}, "aiochris.models.data.PluginInstanceData.previous_id": {"fullname": "aiochris.models.data.PluginInstanceData.previous_id", "modulename": "aiochris.models.data", "qualname": "PluginInstanceData.previous_id", "kind": "variable", "doc": "

FS plugins will not produce a previous_id value\n(even though they will return \"previous\": null)

\n", "annotation": ": Optional[int]", "default_value": " = None"}, "aiochris.models.data.PluginInstanceData.size": {"fullname": "aiochris.models.data.PluginInstanceData.size", "modulename": "aiochris.models.data", "qualname": "PluginInstanceData.size", "kind": "variable", "doc": "

IDK what it is the size of.

\n\n

This field shows up when the plugin instance is maybe done,\nbut not when the plugin instance is created.

\n", "annotation": ": Optional[int]", "default_value": " = None"}, "aiochris.models.data.PluginInstanceData.template": {"fullname": "aiochris.models.data.PluginInstanceData.template", "modulename": "aiochris.models.data", "qualname": "PluginInstanceData.template", "kind": "variable", "doc": "

Present only when getting a plugin instance.

\n", "annotation": ": Optional[dict]", "default_value": " = None"}, "aiochris.models.data.FeedData": {"fullname": "aiochris.models.data.FeedData", "modulename": "aiochris.models.data", "qualname": "FeedData", "kind": "class", "doc": "

\n", "bases": "aiochris.link.linked.LinkedModel"}, "aiochris.models.data.FeedData.__init__": {"fullname": "aiochris.models.data.FeedData.__init__", "modulename": "aiochris.models.data", "qualname": "FeedData.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.FeedUrl,\tid: aiochris.types.FeedId,\tcreation_date: datetime.datetime,\tmodification_date: datetime.datetime,\tname: str,\tcreator_username: aiochris.types.Username,\tcreated_jobs: int,\twaiting_jobs: int,\tscheduled_jobs: int,\tstarted_jobs: int,\tregistering_jobs: int,\tfinished_jobs: int,\terrored_jobs: int,\tcancelled_jobs: int,\towner: list[aiochris.types.UserUrl],\tnote: aiochris.types.NoteUrl,\ttags: aiochris.types.TagsUrl,\ttaggings: aiochris.types.TaggingsUrl,\tcomments: aiochris.types.CommentsUrl,\tfiles: aiochris.types.FilesUrl,\tplugin_instances: aiochris.types.PluginInstancesUrl)"}, "aiochris.models.data.FeedNoteData": {"fullname": "aiochris.models.data.FeedNoteData", "modulename": "aiochris.models.data", "qualname": "FeedNoteData", "kind": "class", "doc": "

\n", "bases": "aiochris.link.linked.LinkedModel"}, "aiochris.models.data.FeedNoteData.__init__": {"fullname": "aiochris.models.data.FeedNoteData.__init__", "modulename": "aiochris.models.data", "qualname": "FeedNoteData.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.FeedUrl,\tid: aiochris.types.NoteId,\ttitle: str,\tcontent: str,\tfeed: aiochris.types.FeedUrl)"}, "aiochris.models.logged_in": {"fullname": "aiochris.models.logged_in", "modulename": "aiochris.models.logged_in", "kind": "module", "doc": "

Subclasses of classes from aiochris.models.data which are returned\nfrom an aiochris.client.authed.AuthenticatedClient.\nThese classes may have read-write functionality on the ChRIS API.

\n"}, "aiochris.models.logged_in.User": {"fullname": "aiochris.models.logged_in.User", "modulename": "aiochris.models.logged_in", "qualname": "User", "kind": "class", "doc": "

\n", "bases": "aiochris.models.data.UserData, aiochris.link.linked.LinkedModel"}, "aiochris.models.logged_in.User.__init__": {"fullname": "aiochris.models.logged_in.User.__init__", "modulename": "aiochris.models.logged_in", "qualname": "User.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.UserUrl,\tid: aiochris.types.UserId,\tusername: aiochris.types.Username,\temail: str)"}, "aiochris.models.logged_in.File": {"fullname": "aiochris.models.logged_in.File", "modulename": "aiochris.models.logged_in", "qualname": "File", "kind": "class", "doc": "

A file in CUBE.

\n", "bases": "aiochris.link.linked.LinkedModel"}, "aiochris.models.logged_in.File.__init__": {"fullname": "aiochris.models.logged_in.File.__init__", "modulename": "aiochris.models.logged_in", "qualname": "File.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: str,\tfname: aiochris.types.FileFname,\tfsize: int,\tfile_resource: aiochris.types.FileResourceUrl)"}, "aiochris.models.logged_in.File.parent": {"fullname": "aiochris.models.logged_in.File.parent", "modulename": "aiochris.models.logged_in", "qualname": "File.parent", "kind": "variable", "doc": "

Get the parent (directory) of a file.

\n\n
Examples
\n\n
\n
assert file.fname == 'chris/feed_4/pl-dircopy_7/data/hello-world.txt'\nassert file.parent == 'chris/feed_4/pl-dircopy_7/data'\n
\n
\n", "annotation": ": str"}, "aiochris.models.logged_in.PACSFile": {"fullname": "aiochris.models.logged_in.PACSFile", "modulename": "aiochris.models.logged_in", "qualname": "PACSFile", "kind": "class", "doc": "

A file from a PACS server which was pushed into ChRIS.\nA PACSFile is usually a DICOM file.

\n\n

See https://github.com/FNNDSC/ChRIS_ultron_backEnd/blob/a1bf499144df79622eb3f8a459cdb80d8e34cb04/chris_backend/pacsfiles/models.py#L16-L33

\n", "bases": "File"}, "aiochris.models.logged_in.PACSFile.__init__": {"fullname": "aiochris.models.logged_in.PACSFile.__init__", "modulename": "aiochris.models.logged_in", "qualname": "PACSFile.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: str,\tfname: aiochris.types.FileFname,\tfsize: int,\tfile_resource: aiochris.types.FileResourceUrl,\tPatientID: str,\tPatientName: str,\tPatientBirthDate: str,\tPatientAge: int,\tPatientSex: str,\tStudyDate: str,\tAccessionNumber: str,\tModality: str,\tProtocolName: str,\tStudyInstanceUID: str,\tStudyDescription: str,\tSeriesInstanceUID: str,\tSeriesDescription: str,\tpacs_identifier: str)"}, "aiochris.models.logged_in.PluginInstance": {"fullname": "aiochris.models.logged_in.PluginInstance", "modulename": "aiochris.models.logged_in", "qualname": "PluginInstance", "kind": "class", "doc": "

\n", "bases": "aiochris.models.data.PluginInstanceData"}, "aiochris.models.logged_in.PluginInstance.__init__": {"fullname": "aiochris.models.logged_in.PluginInstance.__init__", "modulename": "aiochris.models.logged_in", "qualname": "PluginInstance.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.PluginInstanceUrl,\tid: aiochris.types.PluginInstanceId,\ttitle: str,\tcompute_resource_name: aiochris.types.ComputeResourceName,\tplugin_id: aiochris.types.PluginId,\tplugin_name: aiochris.types.PluginName,\tplugin_version: aiochris.types.PluginVersion,\tplugin_type: aiochris.enums.PluginType,\tpipeline_inst: Optional[int],\tfeed_id: aiochris.types.FeedId,\tstart_date: datetime.datetime,\tend_date: datetime.datetime,\toutput_path: aiochris.types.CubeFilePath,\tstatus: aiochris.enums.Status,\tsummary: str,\traw: str,\towner_username: aiochris.types.Username,\tcpu_limit: int,\tmemory_limit: int,\tnumber_of_workers: int,\tgpu_limit: int,\terror_code: aiochris.types.CUBEErrorCode,\tprevious: Optional[aiochris.types.PluginInstanceUrl],\tfeed: aiochris.types.FeedUrl,\tplugin: aiochris.types.PluginUrl,\tdescendants: aiochris.types.DescendantsUrl,\tfiles: aiochris.types.FilesUrl,\tparameters: aiochris.types.PluginInstanceParametersUrl,\tcompute_resource: aiochris.types.ComputeResourceUrl,\tsplits: aiochris.types.SplitsUrl,\tprevious_id: Optional[int] = None,\tsize: Optional[int] = None,\ttemplate: Optional[dict] = None)"}, "aiochris.models.logged_in.PluginInstance.get_feed": {"fullname": "aiochris.models.logged_in.PluginInstance.get_feed", "modulename": "aiochris.models.logged_in", "qualname": "PluginInstance.get_feed", "kind": "function", "doc": "

Get the feed this plugin instance belongs to.

\n", "signature": "(self) -> aiochris.models.logged_in.Feed:", "funcdef": "async def"}, "aiochris.models.logged_in.PluginInstance.get": {"fullname": "aiochris.models.logged_in.PluginInstance.get", "modulename": "aiochris.models.logged_in", "qualname": "PluginInstance.get", "kind": "function", "doc": "

Get this plugin's state (again).

\n", "signature": "(self) -> aiochris.models.logged_in.PluginInstance:", "funcdef": "async def"}, "aiochris.models.logged_in.PluginInstance.set": {"fullname": "aiochris.models.logged_in.PluginInstance.set", "modulename": "aiochris.models.logged_in", "qualname": "PluginInstance.set", "kind": "function", "doc": "

Set the title or status of this plugin instance.

\n", "signature": "(\tself,\ttitle: Optional[str] = None,\tstatus: Optional[str] = None) -> aiochris.models.logged_in.PluginInstance:", "funcdef": "async def"}, "aiochris.models.logged_in.PluginInstance.delete": {"fullname": "aiochris.models.logged_in.PluginInstance.delete", "modulename": "aiochris.models.logged_in", "qualname": "PluginInstance.delete", "kind": "function", "doc": "

Delete this plugin instance.

\n", "signature": "(self) -> None:", "funcdef": "async def"}, "aiochris.models.logged_in.PluginInstance.wait": {"fullname": "aiochris.models.logged_in.PluginInstance.wait", "modulename": "aiochris.models.logged_in", "qualname": "PluginInstance.wait", "kind": "function", "doc": "

Wait until this plugin instance finishes (or some other desired status).

\n\n
Parameters
\n\n\n\n
Returns
\n\n\n", "signature": "(\tself,\tstatus: Union[aiochris.enums.Status, Sequence[aiochris.enums.Status]] = (<Status.finishedSuccessfully: 'finishedSuccessfully'>, <Status.finishedWithError: 'finishedWithError'>, <Status.cancelled: 'cancelled'>),\ttimeout: float = 300,\tinterval: float = 5) -> tuple[float, aiochris.models.logged_in.PluginInstance]:", "funcdef": "async def"}, "aiochris.models.logged_in.FeedNote": {"fullname": "aiochris.models.logged_in.FeedNote", "modulename": "aiochris.models.logged_in", "qualname": "FeedNote", "kind": "class", "doc": "

\n", "bases": "aiochris.models.data.FeedNoteData"}, "aiochris.models.logged_in.FeedNote.__init__": {"fullname": "aiochris.models.logged_in.FeedNote.__init__", "modulename": "aiochris.models.logged_in", "qualname": "FeedNote.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.FeedUrl,\tid: aiochris.types.NoteId,\ttitle: str,\tcontent: str,\tfeed: aiochris.types.FeedUrl)"}, "aiochris.models.logged_in.FeedNote.get_feed": {"fullname": "aiochris.models.logged_in.FeedNote.get_feed", "modulename": "aiochris.models.logged_in", "qualname": "FeedNote.get_feed", "kind": "function", "doc": "

Get the feed this note belongs to.

\n", "signature": "(self) -> aiochris.models.logged_in.Feed:", "funcdef": "async def"}, "aiochris.models.logged_in.FeedNote.set": {"fullname": "aiochris.models.logged_in.FeedNote.set", "modulename": "aiochris.models.logged_in", "qualname": "FeedNote.set", "kind": "function", "doc": "

Change this note.

\n", "signature": "(\tself,\ttitle: Optional[str] = None,\tcontent: Optional[str] = None) -> aiochris.models.logged_in.FeedNote:", "funcdef": "async def"}, "aiochris.models.logged_in.Feed": {"fullname": "aiochris.models.logged_in.Feed", "modulename": "aiochris.models.logged_in", "qualname": "Feed", "kind": "class", "doc": "

A feed of a logged in user.

\n", "bases": "aiochris.models.data.FeedData"}, "aiochris.models.logged_in.Feed.__init__": {"fullname": "aiochris.models.logged_in.Feed.__init__", "modulename": "aiochris.models.logged_in", "qualname": "Feed.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.FeedUrl,\tid: aiochris.types.FeedId,\tcreation_date: datetime.datetime,\tmodification_date: datetime.datetime,\tname: str,\tcreator_username: aiochris.types.Username,\tcreated_jobs: int,\twaiting_jobs: int,\tscheduled_jobs: int,\tstarted_jobs: int,\tregistering_jobs: int,\tfinished_jobs: int,\terrored_jobs: int,\tcancelled_jobs: int,\towner: list[aiochris.types.UserUrl],\tnote: aiochris.types.NoteUrl,\ttags: aiochris.types.TagsUrl,\ttaggings: aiochris.types.TaggingsUrl,\tcomments: aiochris.types.CommentsUrl,\tfiles: aiochris.types.FilesUrl,\tplugin_instances: aiochris.types.PluginInstancesUrl)"}, "aiochris.models.logged_in.Feed.set": {"fullname": "aiochris.models.logged_in.Feed.set", "modulename": "aiochris.models.logged_in", "qualname": "Feed.set", "kind": "function", "doc": "

Change the name or the owner of this feed.

\n\n
Parameters
\n\n\n", "signature": "(\tself,\tname: Optional[str] = None,\towner: Union[str, aiochris.types.Username, NoneType] = None) -> aiochris.models.logged_in.Feed:", "funcdef": "async def"}, "aiochris.models.logged_in.Feed.get_note": {"fullname": "aiochris.models.logged_in.Feed.get_note", "modulename": "aiochris.models.logged_in", "qualname": "Feed.get_note", "kind": "function", "doc": "

\n", "signature": "(self) -> aiochris.models.logged_in.FeedNote:", "funcdef": "async def"}, "aiochris.models.logged_in.Plugin": {"fullname": "aiochris.models.logged_in.Plugin", "modulename": "aiochris.models.logged_in", "qualname": "Plugin", "kind": "class", "doc": "

A ChRIS plugin. Create a plugin instance of this plugin to run it.

\n", "bases": "aiochris.models.public.PublicPlugin"}, "aiochris.models.logged_in.Plugin.__init__": {"fullname": "aiochris.models.logged_in.Plugin.__init__", "modulename": "aiochris.models.logged_in", "qualname": "Plugin.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.PluginUrl,\tid: aiochris.types.PluginId,\tname: aiochris.types.PluginName,\tversion: aiochris.types.PluginVersion,\tdock_image: aiochris.types.ImageTag,\tpublic_repo: str,\tcompute_resources: aiochris.types.ComputeResourceUrl,\tparameters: aiochris.types.PluginParametersUrl,\tplugin_type: aiochris.enums.PluginType,\tinstances: aiochris.types.ApiUrl)"}, "aiochris.models.logged_in.Plugin.create_instance": {"fullname": "aiochris.models.logged_in.Plugin.create_instance", "modulename": "aiochris.models.logged_in", "qualname": "Plugin.create_instance", "kind": "function", "doc": "

Create a plugin instance, i.e. \"run\" this plugin.

\n\n

Parameters common to all plugins are described below.\nNot all valid parameters are listed, since each plugin's parameters are different.\nSome plugins have required parameters too.\nTo list all possible parameters, make a GET request to the specific plugin's instances link.

\n\n
Parameters
\n\n\n", "signature": "(\tself,\tprevious: Optional[aiochris.models.logged_in.PluginInstance] = None,\t**kwargs) -> aiochris.models.logged_in.PluginInstance:", "funcdef": "async def"}, "aiochris.models.public": {"fullname": "aiochris.models.public", "modulename": "aiochris.models.public", "kind": "module", "doc": "

Read-only models for CUBE resources.

\n"}, "aiochris.models.public.ComputeResource": {"fullname": "aiochris.models.public.ComputeResource", "modulename": "aiochris.models.public", "qualname": "ComputeResource", "kind": "class", "doc": "

\n"}, "aiochris.models.public.ComputeResource.__init__": {"fullname": "aiochris.models.public.ComputeResource.__init__", "modulename": "aiochris.models.public", "qualname": "ComputeResource.__init__", "kind": "function", "doc": "

\n", "signature": "(\turl: aiochris.types.ApiUrl,\tid: aiochris.types.ComputeResourceId,\tcreation_date: str,\tmodification_date: str,\tname: aiochris.types.ComputeResourceName,\tcompute_url: aiochris.types.PfconUrl,\tcompute_auth_url: str,\tdescription: str,\tmax_job_exec_seconds: int)"}, "aiochris.models.public.PluginParameter": {"fullname": "aiochris.models.public.PluginParameter", "modulename": "aiochris.models.public", "qualname": "PluginParameter", "kind": "class", "doc": "

Information about a parameter (a command-line option/flag) of a plugin.

\n", "bases": "aiochris.link.linked.LinkedModel"}, "aiochris.models.public.PluginParameter.__init__": {"fullname": "aiochris.models.public.PluginParameter.__init__", "modulename": "aiochris.models.public", "qualname": "PluginParameter.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.PluginParameterUrl,\tid: aiochris.types.ParameterGlobalId,\tname: aiochris.types.ParameterName,\ttype: Union[str, int, float, bool],\toptional: bool,\tdefault: Union[str, int, float, bool, NoneType],\tflag: str,\tshort_flag: str,\taction: Literal['store', 'store_true', 'store_false'],\thelp: str,\tui_exposed: bool,\tplugin: aiochris.types.PluginUrl)"}, "aiochris.models.public.PublicPlugin": {"fullname": "aiochris.models.public.PublicPlugin", "modulename": "aiochris.models.public", "qualname": "PublicPlugin", "kind": "class", "doc": "

A ChRIS plugin.

\n", "bases": "aiochris.link.linked.LinkedModel"}, "aiochris.models.public.PublicPlugin.__init__": {"fullname": "aiochris.models.public.PublicPlugin.__init__", "modulename": "aiochris.models.public", "qualname": "PublicPlugin.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.PluginUrl,\tid: aiochris.types.PluginId,\tname: aiochris.types.PluginName,\tversion: aiochris.types.PluginVersion,\tdock_image: aiochris.types.ImageTag,\tpublic_repo: str,\tcompute_resources: aiochris.types.ComputeResourceUrl,\tparameters: aiochris.types.PluginParametersUrl,\tplugin_type: aiochris.enums.PluginType)"}, "aiochris.models.public.PublicPlugin.get_compute_resources": {"fullname": "aiochris.models.public.PublicPlugin.get_compute_resources", "modulename": "aiochris.models.public", "qualname": "PublicPlugin.get_compute_resources", "kind": "function", "doc": "

Get the compute resources this plugin is registered to.

\n", "signature": "(\tself) -> aiochris.util.search.Search[aiochris.models.public.ComputeResource]:", "funcdef": "def"}, "aiochris.models.public.PublicPlugin.get_parameters": {"fullname": "aiochris.models.public.PublicPlugin.get_parameters", "modulename": "aiochris.models.public", "qualname": "PublicPlugin.get_parameters", "kind": "function", "doc": "

Get the parameters of this plugin.

\n", "signature": "(\tself) -> aiochris.util.search.Search[aiochris.models.public.PluginParameter]:", "funcdef": "def"}, "aiochris.models.public.PublicPlugin.print_help": {"fullname": "aiochris.models.public.PublicPlugin.print_help", "modulename": "aiochris.models.public", "qualname": "PublicPlugin.print_help", "kind": "function", "doc": "

Display the help messages for this plugin's parameters.

\n", "signature": "(self, out: <class 'TextIO'> = <_io.StringIO object>) -> None:", "funcdef": "async def"}, "aiochris.types": {"fullname": "aiochris.types", "modulename": "aiochris.types", "kind": "module", "doc": "

NewTypes for ChRIS models.

\n"}, "aiochris.types.Username": {"fullname": "aiochris.types.Username", "modulename": "aiochris.types", "qualname": "Username", "kind": "variable", "doc": "

ChRIS user account username

\n", "default_value": " = aiochris.types.Username"}, "aiochris.types.Password": {"fullname": "aiochris.types.Password", "modulename": "aiochris.types", "qualname": "Password", "kind": "variable", "doc": "

ChRIS user account password

\n", "default_value": " = aiochris.types.Password"}, "aiochris.types.ChrisURL": {"fullname": "aiochris.types.ChrisURL", "modulename": "aiochris.types", "qualname": "ChrisURL", "kind": "variable", "doc": "

ChRIS backend API base URL

\n", "default_value": " = aiochris.types.ChrisURL"}, "aiochris.types.ApiUrl": {"fullname": "aiochris.types.ApiUrl", "modulename": "aiochris.types", "qualname": "ApiUrl", "kind": "variable", "doc": "

Any CUBE URL which I am too lazy to be more specific about.

\n", "default_value": " = aiochris.types.ApiUrl"}, "aiochris.types.ResourceId": {"fullname": "aiochris.types.ResourceId", "modulename": "aiochris.types", "qualname": "ResourceId", "kind": "variable", "doc": "

ID number which I am too lazy to be more specific about.

\n", "default_value": " = aiochris.types.ResourceId"}, "aiochris.types.PluginName": {"fullname": "aiochris.types.PluginName", "modulename": "aiochris.types", "qualname": "PluginName", "kind": "variable", "doc": "

Name of a ChRIS plugin

\n", "default_value": " = aiochris.types.PluginName"}, "aiochris.types.ImageTag": {"fullname": "aiochris.types.ImageTag", "modulename": "aiochris.types", "qualname": "ImageTag", "kind": "variable", "doc": "

OCI image tag (informally, a Docker Image name)

\n", "default_value": " = aiochris.types.ImageTag"}, "aiochris.types.PluginVersion": {"fullname": "aiochris.types.PluginVersion", "modulename": "aiochris.types", "qualname": "PluginVersion", "kind": "variable", "doc": "

Version string of a ChRIS plugin

\n", "default_value": " = aiochris.types.PluginVersion"}, "aiochris.types.PluginUrl": {"fullname": "aiochris.types.PluginUrl", "modulename": "aiochris.types", "qualname": "PluginUrl", "kind": "variable", "doc": "

URL of a ChRIS plugin.

\n\n

Examples

\n\n\n", "default_value": " = aiochris.types.PluginUrl"}, "aiochris.types.AdminUrl": {"fullname": "aiochris.types.AdminUrl", "modulename": "aiochris.types", "qualname": "AdminUrl", "kind": "variable", "doc": "

A admin resource URL ending with /chris-admin/api/v1/

\n", "default_value": " = aiochris.types.AdminUrl"}, "aiochris.types.NoteId": {"fullname": "aiochris.types.NoteId", "modulename": "aiochris.types", "qualname": "NoteId", "kind": "variable", "doc": "

A feed note's ID number.

\n", "default_value": " = aiochris.types.NoteId"}, "aiochris.types.NoteUrl": {"fullname": "aiochris.types.NoteUrl", "modulename": "aiochris.types", "qualname": "NoteUrl", "kind": "variable", "doc": "

A feed's note URL.

\n\n

Examples

\n\n\n", "default_value": " = aiochris.types.NoteUrl"}, "aiochris.util": {"fullname": "aiochris.util", "modulename": "aiochris.util", "kind": "module", "doc": "

\n"}, "aiochris.util.search": {"fullname": "aiochris.util.search", "modulename": "aiochris.util.search", "kind": "module", "doc": "

\n"}, "aiochris.util.search.Search": {"fullname": "aiochris.util.search.Search", "modulename": "aiochris.util.search", "qualname": "Search", "kind": "class", "doc": "

Abstraction over paginated collection responses from CUBE.\nSearch objects are returned by methods for search endpoints of the CUBE API.\nIt is an asynchronous iterable\nwhich produces items from responses that return multiple results.\nHTTP requests are fired as-neede, they happen in the background during iteration.\nNo request is made before the first time a Search object is called.

\n\n
\n\n
Pagination is handled internally and automatically.
\n\n

The query parameters limit and offset can be explicitly given, but they shouldn't.

\n\n
\n\n
Examples
\n\n

Use an async for loop to print the name of every feed:

\n\n
\n
all_feeds = chris.search_feeds()  # returns a Search[Feed]\nasync for feed in all_feeds:\n    print(feed.name)\n
\n
\n", "bases": "typing.Generic[~T], typing.AsyncIterable[~T]"}, "aiochris.util.search.Search.__init__": {"fullname": "aiochris.util.search.Search.__init__", "modulename": "aiochris.util.search", "qualname": "Search.__init__", "kind": "function", "doc": "

\n", "signature": "(\tbase_url: str,\tparams: dict[str, typing.Any],\tclient: aiochris.link.linked.Linked,\tItem: Type[~T],\tmax_requests: int = 100,\tsubpath: str = 'search/')"}, "aiochris.util.search.Search.first": {"fullname": "aiochris.util.search.Search.first", "modulename": "aiochris.util.search", "qualname": "Search.first", "kind": "function", "doc": "

Get the first item.

\n\n
See also
\n\n

get_only : similar use, but more strict

\n", "signature": "(self) -> Optional[~T]:", "funcdef": "async def"}, "aiochris.util.search.Search.get_only": {"fullname": "aiochris.util.search.Search.get_only", "modulename": "aiochris.util.search", "qualname": "Search.get_only", "kind": "function", "doc": "

Get the only item from a search with one result.

\n\n
Examples
\n\n

This method is very commonly used for getting \"one thing\" from CUBE.

\n\n
\n
await chris.search_plugins(name_exact="pl-dircopy", version="2.1.1").get_only()\n
\n
\n\n

In the example above, a search for plugins given (name_exact, version)\nis guaranteed to return either 0 or 1 result.

\n\n
Raises
\n\n\n\n
See also
\n\n

first : does the same thing but without checks.

\n\n
Parameters
\n\n\n", "signature": "(self, allow_multiple=False) -> ~T:", "funcdef": "async def"}, "aiochris.util.search.Search.count": {"fullname": "aiochris.util.search.Search.count", "modulename": "aiochris.util.search", "qualname": "Search.count", "kind": "function", "doc": "

Get the number of items in this collection search.

\n\n
Examples
\n\n

count is useful for rendering a progress bar. TODO example with files

\n", "signature": "(self) -> int:", "funcdef": "async def"}, "aiochris.util.search.acollect": {"fullname": "aiochris.util.search.acollect", "modulename": "aiochris.util.search", "qualname": "acollect", "kind": "function", "doc": "

Simple helper to convert a Search to a list.

\n\n

Using this function is not recommended unless you can assume the collection is small.

\n", "signature": "(async_iterable: AsyncIterable[~T]) -> list[~T]:", "funcdef": "async def"}, "aiochris.util.search.TooMuchPaginationError": {"fullname": "aiochris.util.search.TooMuchPaginationError", "modulename": "aiochris.util.search", "qualname": "TooMuchPaginationError", "kind": "class", "doc": "

Specified maximum number of requests exceeded while retrieving results from a paginated resource.

\n", "bases": "aiochris.errors.BaseClientError"}, "aiochris.util.search.GetOnlyError": {"fullname": "aiochris.util.search.GetOnlyError", "modulename": "aiochris.util.search", "qualname": "GetOnlyError", "kind": "class", "doc": "

Search does not have exactly one result.

\n", "bases": "aiochris.errors.BaseClientError"}, "aiochris.util.search.NoneSearchError": {"fullname": "aiochris.util.search.NoneSearchError", "modulename": "aiochris.util.search", "qualname": "NoneSearchError", "kind": "class", "doc": "

A search expected to have at least one element, has none.

\n", "bases": "GetOnlyError"}, "aiochris.util.search.ManySearchError": {"fullname": "aiochris.util.search.ManySearchError", "modulename": "aiochris.util.search", "qualname": "ManySearchError", "kind": "class", "doc": "

A search expected to have only one result, has several.

\n", "bases": "GetOnlyError"}}, "docInfo": {"aiochris": {"qualname": 0, "fullname": 1, "annotation": 0, "default_value": 0, "signature": 0, "bases": 0, "doc": 2652}, "aiochris.AnonChrisClient": {"qualname": 1, "fullname": 2, "annotation": 0, "default_value": 0, "signature": 0, "bases": 10, "doc": 23}, "aiochris.AnonChrisClient.from_url": {"qualname": 3, "fullname": 4, "annotation": 0, "default_value": 0, "signature": 114, "bases": 0, "doc": 21}, "aiochris.AnonChrisClient.search_plugins": {"qualname": 3, "fullname": 4, "annotation": 0, "default_value": 0, "signature": 59, "bases": 0, "doc": 24}, "aiochris.ChrisClient": {"qualname": 1, "fullname": 2, "annotation": 0, "default_value": 0, "signature": 0, "bases": 10, "doc": 18}, "aiochris.ChrisClient.create_user": {"qualname": 3, "fullname": 4, "annotation": 0, "default_value": 0, "signature": 174, "bases": 0, "doc": 3}, "aiochris.ChrisAdminClient": {"qualname": 1, "fullname": 2, "annotation": 0, "default_value": 0, "signature": 0, 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"aiochris.client.authed.AuthenticatedClient.upload_file": {"tf": 1}}, "df": 2}}, "w": {"docs": {}, "df": 0, "h": {"docs": {}, "df": 0, "a": {"docs": {}, "df": 0, "t": {"docs": {"aiochris": {"tf": 1}, "aiochris.models.data.PluginInstanceData.size": {"tf": 1}}, "df": 2}}, "e": {"docs": {}, "df": 0, "n": {"docs": {"aiochris": {"tf": 1}, "aiochris.client.authed.AuthenticatedClient.from_chrs": {"tf": 1.4142135623730951}, "aiochris.models.data.PluginInstanceData.size": {"tf": 1.4142135623730951}, "aiochris.models.data.PluginInstanceData.template": {"tf": 1}}, "df": 4}, "r": {"docs": {}, "df": 0, "e": {"docs": {"aiochris.client.authed.AuthenticatedClient.upload_file": {"tf": 1}, "aiochris.models.logged_in.Plugin.create_instance": {"tf": 1}}, "df": 2}}}, "o": {"docs": {"aiochris.ChrisClient": {"tf": 1}, "aiochris.ChrisAdminClient": {"tf": 1}, "aiochris.client.admin.ChrisAdminClient": {"tf": 1}, "aiochris.client.normal.ChrisClient": {"tf": 1}}, "df": 4}, "i": {"docs": {}, "df": 0, "c": {"docs": 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1}, "aiochris.models.logged_in.Plugin.create_instance": {"tf": 1}, "aiochris.types.AdminUrl": {"tf": 1}, "aiochris.util.search.Search.get_only": {"tf": 1}, "aiochris.util.search.Search.count": {"tf": 1}}, "df": 12, "o": {"docs": {}, "df": 0, "u": {"docs": {}, "df": 0, "t": {"docs": {"aiochris": {"tf": 1.4142135623730951}, "aiochris.Search.get_only": {"tf": 1}, "aiochris.client.authed.AuthenticatedClient.from_chrs": {"tf": 1}, "aiochris.util.search.Search.get_only": {"tf": 1}}, "df": 4}}}}}, "l": {"docs": {}, "df": 0, "l": {"docs": {"aiochris": {"tf": 1}, "aiochris.client.authed.AuthenticatedClient.upload_file": {"tf": 1}, "aiochris.client.authed.AuthenticatedClient.username": {"tf": 1}, "aiochris.client.base.BaseChrisClient.new": {"tf": 1}, "aiochris.models.data.PluginInstanceData.previous_id": {"tf": 1.4142135623730951}, "aiochris.models.logged_in.PluginInstance.wait": {"tf": 1}}, "df": 6}}}, "o": {"docs": {}, "df": 0, "r": {"docs": {}, "df": 0, "k": {"docs": {}, "df": 0, "s": 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"n": {"docs": {"aiochris.ChrisAdminClient.add_plugin": {"tf": 1.4142135623730951}, "aiochris.client.admin.ChrisAdminClient.add_plugin": {"tf": 1.4142135623730951}}, "df": 2}}}, "o": {"docs": {}, "df": 0, "b": {"docs": {"aiochris.models.data.PluginInstanceData": {"tf": 1}}, "df": 1, "s": {"docs": {"aiochris.client.authed.AuthenticatedClient.upload_file": {"tf": 1.4142135623730951}}, "df": 1}}}}, "k": {"docs": {}, "df": 0, "e": {"docs": {}, "df": 0, "e": {"docs": {}, "df": 0, "p": {"docs": {"aiochris": {"tf": 1}}, "df": 1}}, "y": {"docs": {}, "df": 0, "r": {"docs": {}, "df": 0, "i": {"docs": {}, "df": 0, "n": {"docs": {}, "df": 0, "g": {"docs": {"aiochris.client.from_chrs.ChrsLogin.to_keyring_username": {"tf": 1}, "aiochris.client.from_chrs.ChrsKeyringError": {"tf": 1}}, "df": 2}}}}}}}, "y": {"docs": {}, "df": 0, "o": {"docs": {}, "df": 0, "u": {"docs": {"aiochris": {"tf": 1.7320508075688772}, "aiochris.AnonChrisClient.search_plugins": {"tf": 1}, "aiochris.ChrisAdminClient.add_plugin": {"tf": 1}, "aiochris.acollect": {"tf": 1}, "aiochris.client.admin.ChrisAdminClient.add_plugin": {"tf": 1}, "aiochris.client.anon.AnonChrisClient.search_plugins": {"tf": 1}, "aiochris.client.authed.AuthenticatedClient.from_chrs": {"tf": 1.4142135623730951}, "aiochris.client.base.BaseChrisClient.new": {"tf": 1}, "aiochris.models.logged_in.PluginInstance.wait": {"tf": 1}, "aiochris.util.search.acollect": {"tf": 1}}, "df": 10, "r": {"docs": {"aiochris": {"tf": 1}, "aiochris.client.authed.AuthenticatedClient.from_chrs": {"tf": 1}}, "df": 2}}}}, "x": {"docs": {"aiochris.models.logged_in.Plugin.create_instance": {"tf": 2.23606797749979}}, "df": 1}}}}, "pipeline": ["trimmer"], "_isPrebuiltIndex": true}; + /** pdoc search index */const docs = {"version": "0.9.5", "fields": ["qualname", "fullname", "annotation", "default_value", "signature", "bases", "doc"], "ref": "fullname", "documentStore": {"docs": {"aiochris": {"fullname": "aiochris", "modulename": "aiochris", "kind": "module", "doc": "

ChRIS Python client library built on\naiohttp (async HTTP client) and\npyserde\n(dataclasses deserializer).

\n\n

Installation

\n\n

Requires Python 3.10 or 3.11.

\n\n
\n
pip install aiochris\n# or\npoetry add aiochris\n
\n
\n\n

Brief Example

\n\n
\n
from aiochris import ChrisClient\n\nchris = await ChrisClient.from_login(\n    username='chris',\n    password='chris1234',\n    url='https://cube.chrisproject.org/api/v1/'\n)\ndircopy = await chris.search_plugins(name_exact='pl-brainmgz', version='2.0.3').get_only()\nplinst = await dircopy.create_instance(compute_resource_name='host')\nawait plinst.set(title="copies brain image files into feed")\n
\n
\n\n

Introduction

\n\n

aiochris provides three core classes: AnonChrisClient, ChrisClient, and ChrisAdminClient.\nThese clients differ in permissions.

\n\n

\nMethods are only defined for what the client has permission to see or do.

\n\n
\n
anon_client = await AnonChrisClient.from_url('https://cube.chrisproject.org/api/v1/')\n# ok: can search for plugins without logging in...\nplugin = await anon_client.search_plugins(name_exact='pl-mri10yr06mo01da_normal').first()\n# IMPOSSIBLE! AnonChrisClient.create_instance not defined...\nawait plugin.create_instance()\n\n# IMPOSSIBLE! authentication required for ChrisClient\nauthed_client = await ChrisClient.from_url('https://cube.chrisproject.org/api/v1/')\nauthed_client = await ChrisClient.from_login(\n    url='https://cube.chrisproject.org/api/v1/',\n    username='chris',\n    password='chris1234'\n)\n# authenticated client can also search for plugins\nplugin = await authed_client.search_plugins(name_exact='pl-mri10yr06mo01da_normal').first()\nawait plugin.create_instance()  # works!\n
\n
\n\n

\n\n

Client Constructors

\n\n\n\n

aiochris in Jupyter Notebook

\n\n

Jupyter and IPython support top-level await. This, in conjunction with ChrisClient.from_chrs,\nmake aiochris a great way to use _ChRIS_ interactively with code.

\n\n

For a walkthrough, see https://github.com/FNNDSC/aiochris/blob/master/examples/aiochris_as_a_shell.ipynb

\n\n

Working with aiohttp

\n\n

aiochris hides the implementation detail that it is built upon aiohttp,\nhowever one thing is important to keep in mind:\nbe sure to call ChrisClient.close at the end of your program.

\n\n
\n
chris = await ChrisClient.from_login(...)\n# -- snip --\nawait chris.close()\n
\n
\n\n

You can also use an\nasynchronous context manager.

\n\n
\n
async with (await ChrisClient.from_login(...)) as chris:\n    await chris.upload_file('./something.dat', 'something.dat')\n    ...\n
\n
\n\n

Efficiency with Multiple Clients

\n\n

If using more than one aiohttp client in an application, it's more efficient\nto use the same\nconnector.\nOne connector instance should be shared among every client object,\nincluding all aiochris clients and other aiohttp clients.

\n\n

\nExample: efficiently using multiple aiohttp clients

\n\n
\n
import aiohttp\nfrom aiochris import ChrisClient\n\nwith aiohttp.TCPConnector() as connector:\n    chris_client1 = await ChrisClient.from_login(\n        url='https://example.com/cube/api/v1/',\n        username='user1',\n        password='user1234',\n        connector=connector,\n        connector_owner=False\n    )\n    chris_client2 = await ChrisClient.from_login(\n        url='https://example.com/cube/api/v1/',\n        username='user2',\n        password='user4321',\n        connector=connector,\n        connector_owner=False\n    )\n    plain_http_client = aiohttp.ClientSession(connector=connector, connector_owner=False)\n
\n
\n\n

\n\n

Advice for Getting Started

\n\n

Searching for things (plugins, plugin instances, files) in CUBE is a common task,\nand CUBE often returns multiple items per response.\nHence, it is important to understand how the Search helper class works.\nIt simplifies how we interact with paginated collection responses from CUBE.

\n\n

When performing batch operations, use\nasyncio.gather\nto run async functions concurrently.

\n\n

aiochris uses many generic types, so it is recommended you use an IDE\nwith good support for type hints, such as\nPyCharm\nor VSCodium with\nPylance configured.

\n\n

Examples

\n\n

Create a client given username and password

\n\n
\n
from aiochris import ChrisClient\n\nchris = await ChrisClient.from_login(\n    url='https://cube.chrisproject.org/api/v1/',\n    username='chris',\n    password='chris1234'\n)\n
\n
\n\n

Search for a plugin

\n\n
\n
# it's recommended to specify plugin version\nplugin = await chris.search_plugins(name_exact="pl-dcm2niix", version="0.1.0").get_only()\n\n# but if you don't care about plugin version...\nplugin = await chris.search_plugins(name_exact="pl-dcm2niix").first()\n
\n
\n\n

Create a feed by uploading a file

\n\n
\n
uploaded_file = await chris.upload_file('./brain.nii', 'my_experiment/brain.nii')\ndircopy = await chris.search_plugins(name_exact='pl-dircopy', version="2.1.1").get_only()\nplinst = await dircopy.create_instance(dir=uploaded_file.parent)\nfeed = await plinst.get_feed()\nawait feed.set(name="An experiment on uploaded file brain.nii")\n
\n
\n\n

Run a ds-type ChRIS plugin

\n\n
\n
# search for plugin to run\nplugin = await chris.search_plugins(name_exact="pl-dcm2niix", version="0.1.0").get_only()\n\n# search for parent node \nprevious = await chris.plugin_instances(id=44).get_only()\n\nawait plugin.create_instance(\n    previous=previous,               # required. alternatively, specify previous_id\n    title="convert DICOM to NIFTI",  # optional\n    compute_resource_name="galena",  # optional\n    memory_limit="2000Mi",           # optional\n    d=9,                             # optional parameter of pl-dcm2niix\n)\n
\n
\n\n

Search for plugin instances

\n\n
\n
finished_freesurfers = chris.plugin_instances(\n    plugin_name_exact='pl-fshack',\n    status='finishedSuccessfully'\n)\nasync for p in finished_freesurfers:\n    print(f'"{p.title}" finished on date: {p.end_date}')\n
\n
\n\n

Delete all plugin instances with a given title, in parallel

\n\n
\n
import asyncio\nfrom aiochris import ChrisClient, acollect\n\nchris = ChrisClient.from_login(...)\nsearch = chris.plugin_instances(title="delete me")\nplugin_instances = await acollect(search)\nawait asyncio.gather(*(p.delete() for p in plugin_instances))\n
\n
\n\n

Enable Debug Logging

\n\n

A log message will be printed to stderr before every HTTP request is sent.

\n\n
\n
import logging\n\nlogging.basicConfig(level=logging.DEBUG)\n
\n
\n"}, "aiochris.AnonChrisClient": {"fullname": "aiochris.AnonChrisClient", "modulename": "aiochris", "qualname": "AnonChrisClient", "kind": "class", "doc": "

An anonymous ChRIS client. It has access to read-only GET resources,\nsuch as being able to search for plugins.

\n", "bases": "aiochris.client.base.BaseChrisClient[aiochris.models.collection_links.AnonymousCollectionLinks, 'AnonChrisClient']"}, "aiochris.AnonChrisClient.from_url": {"fullname": "aiochris.AnonChrisClient.from_url", "modulename": "aiochris", "qualname": "AnonChrisClient.from_url", "kind": "function", "doc": "

Create an anonymous client.

\n\n

See aiochris.client.base.BaseChrisClient.new for parameter documentation.

\n", "signature": "(\tcls,\turl: str,\tmax_search_requests: int = 100,\tconnector: Optional[aiohttp.connector.BaseConnector] = None,\tconnector_owner: bool = True) -> aiochris.client.anon.AnonChrisClient:", "funcdef": "async def"}, "aiochris.AnonChrisClient.search_plugins": {"fullname": "aiochris.AnonChrisClient.search_plugins", "modulename": "aiochris", "qualname": "AnonChrisClient.search_plugins", "kind": "function", "doc": "

Search for plugins.

\n\n

Since this client is not logged in, you cannot create plugin instances using this client.

\n", "signature": "(\tself,\t**query) -> aiochris.util.search.Search[aiochris.models.public.PublicPlugin]:", "funcdef": "def"}, "aiochris.ChrisClient": {"fullname": "aiochris.ChrisClient", "modulename": "aiochris", "qualname": "ChrisClient", "kind": "class", "doc": "

A normal user ChRIS client, who may upload files and create plugin instances.

\n", "bases": "aiochris.client.authed.AuthenticatedClient[aiochris.models.collection_links.CollectionLinks, 'ChrisClient']"}, "aiochris.ChrisClient.create_user": {"fullname": "aiochris.ChrisClient.create_user", "modulename": "aiochris", "qualname": "ChrisClient.create_user", "kind": "function", "doc": "

\n", "signature": "(\tcls,\turl: Union[aiochris.types.ChrisURL, str],\tusername: Union[aiochris.types.Username, str],\tpassword: Union[aiochris.types.Password, str],\temail: str,\tsession: Optional[aiohttp.client.ClientSession] = None) -> aiochris.models.data.UserData:", "funcdef": "async def"}, "aiochris.ChrisAdminClient": {"fullname": "aiochris.ChrisAdminClient", "modulename": "aiochris", "qualname": "ChrisAdminClient", "kind": "class", "doc": "

A client who has access to /chris-admin/. Admins can register new plugins and\nadd new compute resources.

\n", "bases": "aiochris.client.authed.AuthenticatedClient[aiochris.models.collection_links.AdminCollectionLinks, 'ChrisAdminClient']"}, "aiochris.ChrisAdminClient.register_plugin_from_store": {"fullname": "aiochris.ChrisAdminClient.register_plugin_from_store", "modulename": "aiochris", "qualname": "ChrisAdminClient.register_plugin_from_store", "kind": "function", "doc": "

Register a plugin from a ChRIS Store.

\n", "signature": "(\tself,\tplugin_store_url: aiochris.types.PluginUrl,\tcompute_names: Iterable[aiochris.types.ComputeResourceName]) -> aiochris.models.logged_in.Plugin:", "funcdef": "async def"}, "aiochris.ChrisAdminClient.add_plugin": {"fullname": "aiochris.ChrisAdminClient.add_plugin", "modulename": "aiochris", "qualname": "ChrisAdminClient.add_plugin", "kind": "function", "doc": "

Add a plugin to CUBE.

\n\n
Examples
\n\n
\n
cmd = ['docker', 'run', '--rm', 'fnndsc/pl-mri-preview', 'chris_plugin_info']\noutput = subprocess.check_output(cmd, text=True)\ndesc = json.loads(output)\ndesc['name'] = 'pl-mri-preview'\ndesc['public_repo'] = 'https://github.com/FNNDSC/pl-mri-preview'\ndesc['dock_image'] = 'fnndsc/pl-mri-preview'\n\nawait chris_admin.add_plugin(plugin_description=desc, compute_resources='host')\n
\n
\n\n

The example above is just for show. It's not a good example for several reasons:

\n\n\n\n
\n
all_computes = await chris_admin.get_all_compute_resources()\nawait chris_admin.add_plugin(plugin_description=desc, compute_resources=all_computes)\n
\n
\n\n
Parameters
\n\n\n", "signature": "(\tself,\tplugin_description: str | dict,\tcompute_resources: Union[str, aiochris.models.public.ComputeResource, Iterable[Union[aiochris.models.public.ComputeResource, aiochris.types.ComputeResourceName]]]) -> aiochris.models.logged_in.Plugin:", "funcdef": "async def"}, "aiochris.ChrisAdminClient.create_compute_resource": {"fullname": "aiochris.ChrisAdminClient.create_compute_resource", "modulename": "aiochris", "qualname": "ChrisAdminClient.create_compute_resource", "kind": "function", "doc": "

Define a new compute resource.

\n", "signature": "(\tself,\tname: Union[str, aiochris.types.ComputeResourceName],\tcompute_url: Union[str, aiochris.types.PfconUrl],\tcompute_user: str,\tcompute_password: str,\tcompute_innetwork: bool = None,\tdescription: str = None,\tcompute_auth_url: str = None,\tcompute_auth_token: str = None,\tmax_job_exec_seconds: str = None) -> aiochris.models.public.ComputeResource:", "funcdef": "async def"}, "aiochris.Search": {"fullname": "aiochris.Search", "modulename": "aiochris", "qualname": "Search", "kind": "class", "doc": "

Abstraction over paginated collection responses from CUBE.\nSearch objects are returned by methods for search endpoints of the CUBE API.\nIt is an asynchronous iterable\nwhich produces items from responses that return multiple results.\nHTTP requests are fired as-neede, they happen in the background during iteration.\nNo request is made before the first time a Search object is called.

\n\n
\n\n
Pagination is handled internally and automatically.
\n\n

The query parameters limit and offset can be explicitly given, but they shouldn't.

\n\n
\n\n
Examples
\n\n

Use an async for loop to print the name of every feed:

\n\n
\n
all_feeds = chris.search_feeds()  # returns a Search[Feed]\nasync for feed in all_feeds:\n    print(feed.name)\n
\n
\n", "bases": "typing.Generic[~T], typing.AsyncIterable[~T]"}, "aiochris.Search.__init__": {"fullname": "aiochris.Search.__init__", "modulename": "aiochris", "qualname": "Search.__init__", "kind": "function", "doc": "

\n", "signature": "(\tbase_url: str,\tparams: dict[str, typing.Any],\tclient: aiochris.link.linked.Linked,\tItem: Type[~T],\tmax_requests: int = 100,\tsubpath: str = 'search/')"}, "aiochris.Search.first": {"fullname": "aiochris.Search.first", "modulename": "aiochris", "qualname": "Search.first", "kind": "function", "doc": "

Get the first item.

\n\n
See also
\n\n

get_only : similar use, but more strict

\n", "signature": "(self) -> Optional[~T]:", "funcdef": "async def"}, "aiochris.Search.get_only": {"fullname": "aiochris.Search.get_only", "modulename": "aiochris", "qualname": "Search.get_only", "kind": "function", "doc": "

Get the only item from a search with one result.

\n\n
Examples
\n\n

This method is very commonly used for getting \"one thing\" from CUBE.

\n\n
\n
await chris.search_plugins(name_exact="pl-dircopy", version="2.1.1").get_only()\n
\n
\n\n

In the example above, a search for plugins given (name_exact, version)\nis guaranteed to return either 0 or 1 result.

\n\n
Raises
\n\n\n\n
See also
\n\n

first : does the same thing but without checks.

\n\n
Parameters
\n\n\n", "signature": "(self, allow_multiple=False) -> ~T:", "funcdef": "async def"}, "aiochris.Search.count": {"fullname": "aiochris.Search.count", "modulename": "aiochris", "qualname": "Search.count", "kind": "function", "doc": "

Get the number of items in this collection search.

\n\n
Examples
\n\n

count is useful for rendering a progress bar. TODO example with files

\n", "signature": "(self) -> int:", "funcdef": "async def"}, "aiochris.acollect": {"fullname": "aiochris.acollect", "modulename": "aiochris", "qualname": "acollect", "kind": "function", "doc": "

Simple helper to convert a Search to a list.

\n\n

Using this function is not recommended unless you can assume the collection is small.

\n", "signature": "(async_iterable: AsyncIterable[~T]) -> list[~T]:", "funcdef": "async def"}, "aiochris.Status": {"fullname": "aiochris.Status", "modulename": "aiochris", "qualname": "Status", "kind": "class", "doc": "

Possible statuses of a plugin instance.

\n", "bases": "enum.Enum"}, "aiochris.Status.created": {"fullname": "aiochris.Status.created", "modulename": "aiochris", "qualname": "Status.created", "kind": "variable", "doc": "

\n", "default_value": " = <Status.created: 'created'>"}, "aiochris.Status.waiting": {"fullname": "aiochris.Status.waiting", "modulename": "aiochris", "qualname": "Status.waiting", "kind": "variable", "doc": "

\n", "default_value": " = <Status.waiting: 'waiting'>"}, "aiochris.Status.scheduled": {"fullname": "aiochris.Status.scheduled", "modulename": "aiochris", "qualname": "Status.scheduled", "kind": "variable", "doc": "

\n", "default_value": " = <Status.scheduled: 'scheduled'>"}, "aiochris.Status.started": {"fullname": "aiochris.Status.started", "modulename": "aiochris", "qualname": "Status.started", "kind": "variable", "doc": "

\n", "default_value": " = <Status.started: 'started'>"}, "aiochris.Status.registeringFiles": {"fullname": "aiochris.Status.registeringFiles", "modulename": "aiochris", "qualname": "Status.registeringFiles", "kind": "variable", "doc": "

\n", "default_value": " = <Status.registeringFiles: 'registeringFiles'>"}, "aiochris.Status.finishedSuccessfully": {"fullname": "aiochris.Status.finishedSuccessfully", "modulename": "aiochris", "qualname": "Status.finishedSuccessfully", "kind": "variable", "doc": "

\n", "default_value": " = <Status.finishedSuccessfully: 'finishedSuccessfully'>"}, "aiochris.Status.finishedWithError": {"fullname": "aiochris.Status.finishedWithError", "modulename": "aiochris", "qualname": "Status.finishedWithError", "kind": "variable", "doc": "

\n", "default_value": " = <Status.finishedWithError: 'finishedWithError'>"}, "aiochris.Status.cancelled": {"fullname": "aiochris.Status.cancelled", "modulename": "aiochris", "qualname": "Status.cancelled", "kind": "variable", "doc": "

\n", "default_value": " = <Status.cancelled: 'cancelled'>"}, "aiochris.ParameterTypeName": {"fullname": "aiochris.ParameterTypeName", "modulename": "aiochris", "qualname": "ParameterTypeName", "kind": "class", "doc": "

Plugin parameter types.

\n", "bases": "enum.Enum"}, "aiochris.ParameterTypeName.string": {"fullname": "aiochris.ParameterTypeName.string", "modulename": "aiochris", "qualname": "ParameterTypeName.string", "kind": "variable", "doc": "

\n", "default_value": " = <ParameterTypeName.string: 'string'>"}, "aiochris.ParameterTypeName.integer": {"fullname": "aiochris.ParameterTypeName.integer", "modulename": "aiochris", "qualname": "ParameterTypeName.integer", "kind": "variable", "doc": "

\n", "default_value": " = <ParameterTypeName.integer: 'integer'>"}, "aiochris.ParameterTypeName.float": {"fullname": "aiochris.ParameterTypeName.float", "modulename": "aiochris", "qualname": "ParameterTypeName.float", "kind": "variable", "doc": "

\n", "default_value": " = <ParameterTypeName.float: 'float'>"}, "aiochris.ParameterTypeName.boolean": {"fullname": "aiochris.ParameterTypeName.boolean", "modulename": "aiochris", "qualname": "ParameterTypeName.boolean", "kind": "variable", "doc": "

\n", "default_value": " = <ParameterTypeName.boolean: 'boolean'>"}, "aiochris.client": {"fullname": "aiochris.client", "modulename": "aiochris.client", "kind": "module", "doc": "

\n"}, "aiochris.client.admin": {"fullname": "aiochris.client.admin", "modulename": "aiochris.client.admin", "kind": "module", "doc": "

\n"}, "aiochris.client.admin.ChrisAdminClient": {"fullname": "aiochris.client.admin.ChrisAdminClient", "modulename": "aiochris.client.admin", "qualname": "ChrisAdminClient", "kind": "class", "doc": "

A client who has access to /chris-admin/. Admins can register new plugins and\nadd new compute resources.

\n", "bases": "aiochris.client.authed.AuthenticatedClient[aiochris.models.collection_links.AdminCollectionLinks, 'ChrisAdminClient']"}, "aiochris.client.admin.ChrisAdminClient.register_plugin_from_store": {"fullname": "aiochris.client.admin.ChrisAdminClient.register_plugin_from_store", "modulename": "aiochris.client.admin", "qualname": "ChrisAdminClient.register_plugin_from_store", "kind": "function", "doc": "

Register a plugin from a ChRIS Store.

\n", "signature": "(\tself,\tplugin_store_url: aiochris.types.PluginUrl,\tcompute_names: Iterable[aiochris.types.ComputeResourceName]) -> aiochris.models.logged_in.Plugin:", "funcdef": "async def"}, "aiochris.client.admin.ChrisAdminClient.add_plugin": {"fullname": "aiochris.client.admin.ChrisAdminClient.add_plugin", "modulename": "aiochris.client.admin", "qualname": "ChrisAdminClient.add_plugin", "kind": "function", "doc": "

Add a plugin to CUBE.

\n\n
Examples
\n\n
\n
cmd = ['docker', 'run', '--rm', 'fnndsc/pl-mri-preview', 'chris_plugin_info']\noutput = subprocess.check_output(cmd, text=True)\ndesc = json.loads(output)\ndesc['name'] = 'pl-mri-preview'\ndesc['public_repo'] = 'https://github.com/FNNDSC/pl-mri-preview'\ndesc['dock_image'] = 'fnndsc/pl-mri-preview'\n\nawait chris_admin.add_plugin(plugin_description=desc, compute_resources='host')\n
\n
\n\n

The example above is just for show. It's not a good example for several reasons:

\n\n\n\n
\n
all_computes = await chris_admin.get_all_compute_resources()\nawait chris_admin.add_plugin(plugin_description=desc, compute_resources=all_computes)\n
\n
\n\n
Parameters
\n\n\n", "signature": "(\tself,\tplugin_description: str | dict,\tcompute_resources: Union[str, aiochris.models.public.ComputeResource, Iterable[Union[aiochris.models.public.ComputeResource, aiochris.types.ComputeResourceName]]]) -> aiochris.models.logged_in.Plugin:", "funcdef": "async def"}, "aiochris.client.admin.ChrisAdminClient.create_compute_resource": {"fullname": "aiochris.client.admin.ChrisAdminClient.create_compute_resource", "modulename": "aiochris.client.admin", "qualname": "ChrisAdminClient.create_compute_resource", "kind": "function", "doc": "

Define a new compute resource.

\n", "signature": "(\tself,\tname: Union[str, aiochris.types.ComputeResourceName],\tcompute_url: Union[str, aiochris.types.PfconUrl],\tcompute_user: str,\tcompute_password: str,\tcompute_innetwork: bool = None,\tdescription: str = None,\tcompute_auth_url: str = None,\tcompute_auth_token: str = None,\tmax_job_exec_seconds: str = None) -> aiochris.models.public.ComputeResource:", "funcdef": "async def"}, "aiochris.client.anon": {"fullname": "aiochris.client.anon", "modulename": "aiochris.client.anon", "kind": "module", "doc": "

\n"}, "aiochris.client.anon.AnonChrisClient": {"fullname": "aiochris.client.anon.AnonChrisClient", "modulename": "aiochris.client.anon", "qualname": "AnonChrisClient", "kind": "class", "doc": "

An anonymous ChRIS client. It has access to read-only GET resources,\nsuch as being able to search for plugins.

\n", "bases": "aiochris.client.base.BaseChrisClient[aiochris.models.collection_links.AnonymousCollectionLinks, 'AnonChrisClient']"}, "aiochris.client.anon.AnonChrisClient.from_url": {"fullname": "aiochris.client.anon.AnonChrisClient.from_url", "modulename": "aiochris.client.anon", "qualname": "AnonChrisClient.from_url", "kind": "function", "doc": "

Create an anonymous client.

\n\n

See aiochris.client.base.BaseChrisClient.new for parameter documentation.

\n", "signature": "(\tcls,\turl: str,\tmax_search_requests: int = 100,\tconnector: Optional[aiohttp.connector.BaseConnector] = None,\tconnector_owner: bool = True) -> aiochris.client.anon.AnonChrisClient:", "funcdef": "async def"}, "aiochris.client.anon.AnonChrisClient.search_plugins": {"fullname": "aiochris.client.anon.AnonChrisClient.search_plugins", "modulename": "aiochris.client.anon", "qualname": "AnonChrisClient.search_plugins", "kind": "function", "doc": "

Search for plugins.

\n\n

Since this client is not logged in, you cannot create plugin instances using this client.

\n", "signature": "(\tself,\t**query) -> aiochris.util.search.Search[aiochris.models.public.PublicPlugin]:", "funcdef": "def"}, "aiochris.client.authed": {"fullname": "aiochris.client.authed", "modulename": "aiochris.client.authed", "kind": "module", "doc": "

\n"}, "aiochris.client.authed.AuthenticatedClient": {"fullname": "aiochris.client.authed.AuthenticatedClient", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient", "kind": "class", "doc": "

An authenticated ChRIS client.

\n", "bases": "aiochris.client.base.BaseChrisClient[~L, ~CSelf], typing.Generic[~L, ~CSelf], abc.ABC"}, "aiochris.client.authed.AuthenticatedClient.from_login": {"fullname": "aiochris.client.authed.AuthenticatedClient.from_login", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.from_login", "kind": "function", "doc": "

Get authentication token using username and password, then construct the client.

\n\n

See aiochris.client.base.BaseChrisClient.new for parameter documentation.

\n", "signature": "(\tcls,\turl: Union[str, aiochris.types.ChrisURL],\tusername: Union[str, aiochris.types.Username],\tpassword: Union[str, aiochris.types.Password],\tmax_search_requests: int = 100,\tconnector: Optional[aiohttp.connector.TCPConnector] = None,\tconnector_owner: bool = True) -> ~CSelf:", "funcdef": "async def"}, "aiochris.client.authed.AuthenticatedClient.from_token": {"fullname": "aiochris.client.authed.AuthenticatedClient.from_token", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.from_token", "kind": "function", "doc": "

Construct an authenticated client using the given token.

\n\n

See aiochris.client.base.BaseChrisClient.new for parameter documentation.

\n", "signature": "(\tcls,\turl: Union[str, aiochris.types.ChrisURL],\ttoken: str,\tmax_search_requests: int = 100,\tconnector: Optional[aiohttp.connector.TCPConnector] = None,\tconnector_owner: Optional[bool] = True) -> ~CSelf:", "funcdef": "async def"}, "aiochris.client.authed.AuthenticatedClient.from_chrs": {"fullname": "aiochris.client.authed.AuthenticatedClient.from_chrs", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.from_chrs", "kind": "function", "doc": "

Log in using chrs.\nChRIS logins can be saved with the chrs login command.

\n\n

In order to call this function, aiochris must be installed with the extras from-chrs.\nUsing pip:

\n\n
\n
pip install aiochris[chrs]\n
\n
\n\n

Or using Poetry:

\n\n
\n
poetry add -E chrs aiochris\n
\n
\n\n

from_chrs makes it easy to use aiochris in Jupyter Notebook or IPython,\nespecially since it saves you from having to write your password in a notebook\nthat you want to share with others. Both Jupyter and IPython support top-level await.

\n\n
\n
from aiochris import ChrisClient, acollect\n\nchris = await ChrisClient.from_chrs()\nawait acollect(chris.search_plugins())\n
\n
\n\n

When from_chrs is called with no parameters, it uses the \"preferred account\"\ni.e. the most recently added account, the same _ChRIS_ account and server as\nchrs would when called without options. The \"preferred account\" can be changed\nby running chrs switch.

\n", "signature": "(\tcls,\turl: Union[str, aiochris.types.ChrisURL, NoneType] = None,\tusername: Union[str, aiochris.types.Username, NoneType] = None,\tmax_search_requests: int = 100,\tconnector: Optional[aiohttp.connector.TCPConnector] = None,\tconnector_owner: Optional[bool] = True,\tconfig_file: pathlib.Path = PosixPath('~/.config/chrs/login.toml')) -> ~CSelf:", "funcdef": "async def"}, "aiochris.client.authed.AuthenticatedClient.search_feeds": {"fullname": "aiochris.client.authed.AuthenticatedClient.search_feeds", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.search_feeds", "kind": "function", "doc": "

Search for feeds.

\n", "signature": "(\tself,\t**query) -> aiochris.util.search.Search[aiochris.models.logged_in.Feed]:", "funcdef": "def"}, "aiochris.client.authed.AuthenticatedClient.search_plugins": {"fullname": "aiochris.client.authed.AuthenticatedClient.search_plugins", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.search_plugins", "kind": "function", "doc": "

Search for plugins.

\n", "signature": "(\tself,\t**query) -> aiochris.util.search.Search[aiochris.models.logged_in.Plugin]:", "funcdef": "def"}, "aiochris.client.authed.AuthenticatedClient.plugin_instances": {"fullname": "aiochris.client.authed.AuthenticatedClient.plugin_instances", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.plugin_instances", "kind": "function", "doc": "

Search for plugin instances.

\n", "signature": "(\tself,\t**query) -> aiochris.util.search.Search[aiochris.models.logged_in.PluginInstance]:", "funcdef": "def"}, "aiochris.client.authed.AuthenticatedClient.upload_file": {"fullname": "aiochris.client.authed.AuthenticatedClient.upload_file", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.upload_file", "kind": "function", "doc": "

Upload a local file to ChRIS.

\n\n
\n\n
Uses non-async code.
\n\n

The file is read using non-async code.\nPerformance will suffer with large files and hard drives.\nSee aiolibs/aiohttp#7174

\n\n
\n\n
Examples
\n\n

Upload a single file:

\n\n
\n
aiochris = await ChrisClient.from_login(\n    username='chris',\n    password='chris1234',\n    url='https://cube.chrisproject.org/api/v1/'\n)\nfile = await aiochris.upload_file("./my_data.dat", 'dir/my_data.dat')\nassert file.fname == 'aiochris/uploads/dir/my_data.dat'\n
\n
\n\n

Upload (in parallel) all *.txt files in a directory\n'incoming' to aiochris/uploads/big_folder:

\n\n
\n
upload_jobs = (\n    aiochris.upload_file(p, f'big_folder/{p}')\n    for p in Path('incoming')\n)\nawait asyncio.gather(upload_jobs)\n
\n
\n\n
Parameters
\n\n\n", "signature": "(\tself,\tlocal_file: str | os.PathLike,\tupload_path: str) -> aiochris.models.logged_in.File:", "funcdef": "async def"}, "aiochris.client.authed.AuthenticatedClient.user": {"fullname": "aiochris.client.authed.AuthenticatedClient.user", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.user", "kind": "function", "doc": "

Gets the user's information.

\n", "signature": "(self) -> aiochris.models.logged_in.User:", "funcdef": "async def"}, "aiochris.client.authed.AuthenticatedClient.username": {"fullname": "aiochris.client.authed.AuthenticatedClient.username", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.username", "kind": "function", "doc": "

Gets the username. In contrast to self.user, this method will use a cached API call.

\n", "signature": "(self) -> aiochris.types.Username:", "funcdef": "async def"}, "aiochris.client.authed.AuthenticatedClient.search_compute_resources": {"fullname": "aiochris.client.authed.AuthenticatedClient.search_compute_resources", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.search_compute_resources", "kind": "function", "doc": "

Search for existing compute resources.

\n\n
See also
\n\n

get_all_compute_resources :

\n", "signature": "(\tself,\t**query) -> aiochris.util.search.Search[aiochris.models.public.ComputeResource]:", "funcdef": "def"}, "aiochris.client.authed.AuthenticatedClient.get_all_compute_resources": {"fullname": "aiochris.client.authed.AuthenticatedClient.get_all_compute_resources", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.get_all_compute_resources", "kind": "function", "doc": "

Get all compute resources.

\n\n

This method exists for convenience.\nThe number of compute resources of a CUBE is typically small so it's ok.

\n\n
See also
\n\n

search_compute_resources :

\n", "signature": "(self) -> Sequence[aiochris.models.public.ComputeResource]:", "funcdef": "async def"}, "aiochris.client.authed.AuthenticatedClient.search_pacsfiles": {"fullname": "aiochris.client.authed.AuthenticatedClient.search_pacsfiles", "modulename": "aiochris.client.authed", "qualname": "AuthenticatedClient.search_pacsfiles", "kind": "function", "doc": "

Search for PACS files.

\n", "signature": "(\tself,\t**query) -> aiochris.util.search.Search[aiochris.models.logged_in.PACSFile]:", "funcdef": "def"}, "aiochris.client.base": {"fullname": "aiochris.client.base", "modulename": "aiochris.client.base", "kind": "module", "doc": "

\n"}, "aiochris.client.base.BaseChrisClient": {"fullname": "aiochris.client.base.BaseChrisClient", "modulename": "aiochris.client.base", "qualname": "BaseChrisClient", "kind": "class", "doc": "

Provides the implementation for most of the read-only GET resources of ChRIS\nand functions related to the client object's own usage.

\n", "bases": "typing.Generic[~L, ~CSelf], aiochris.link.collection_client.CollectionJsonApiClient[~L], typing.AsyncContextManager[~CSelf], abc.ABC"}, "aiochris.client.base.BaseChrisClient.new": {"fullname": "aiochris.client.base.BaseChrisClient.new", "modulename": "aiochris.client.base", "qualname": "BaseChrisClient.new", "kind": "function", "doc": "

A constructor which creates the session for the BaseChrisClient\nand makes an initial request to populate collection_links.

\n\n
Parameters
\n\n\n", "signature": "(\tcls,\turl: str,\tmax_search_requests: int = 100,\tconnector: Optional[aiohttp.connector.BaseConnector] = None,\tconnector_owner: bool = True,\tsession_modifier: Optional[Callable[[aiohttp.client.ClientSession], NoneType]] = None) -> ~CSelf:", "funcdef": "async def"}, "aiochris.client.base.BaseChrisClient.close": {"fullname": "aiochris.client.base.BaseChrisClient.close", "modulename": "aiochris.client.base", "qualname": "BaseChrisClient.close", "kind": "function", "doc": "

Close the HTTP session used by this client.

\n", "signature": "(self):", "funcdef": "async def"}, "aiochris.client.base.BaseChrisClient.search_plugins": {"fullname": "aiochris.client.base.BaseChrisClient.search_plugins", "modulename": "aiochris.client.base", "qualname": "BaseChrisClient.search_plugins", "kind": "function", "doc": "

Search for plugins.

\n", "signature": "(\tself,\t**query) -> aiochris.util.search.Search[aiochris.models.public.PublicPlugin]:", "funcdef": "def"}, "aiochris.client.from_chrs": {"fullname": "aiochris.client.from_chrs", "modulename": "aiochris.client.from_chrs", "kind": "module", "doc": "

Interoperability with chrs version 0.2.4.

\n\n

The functions of this module uses dynamic importing of extras from the chrs group.

\n"}, "aiochris.client.from_chrs.StoredToken": {"fullname": "aiochris.client.from_chrs.StoredToken", "modulename": "aiochris.client.from_chrs", "qualname": "StoredToken", "kind": "class", "doc": "

https://github.com/FNNDSC/chrs/blob/v0.2.4/chrs/src/login/tokenstore.rs#L18-L24

\n"}, "aiochris.client.from_chrs.StoredToken.__init__": {"fullname": "aiochris.client.from_chrs.StoredToken.__init__", "modulename": "aiochris.client.from_chrs", "qualname": "StoredToken.__init__", "kind": "function", "doc": "

\n", "signature": "(store: Literal['Text', 'Keyring'], value: Optional[str] = None)"}, "aiochris.client.from_chrs.ChrsLogin": {"fullname": "aiochris.client.from_chrs.ChrsLogin", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogin", "kind": "class", "doc": "

A login saved by chrs.

\n\n

https://github.com/FNNDSC/chrs/blob/v0.2.4/chrs/src/login/tokenstore.rs#L18-L34

\n"}, "aiochris.client.from_chrs.ChrsLogin.__init__": {"fullname": "aiochris.client.from_chrs.ChrsLogin.__init__", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogin.__init__", "kind": "function", "doc": "

\n", "signature": "(\taddress: aiochris.types.ChrisURL,\tusername: aiochris.types.Username,\tstore: aiochris.client.from_chrs.StoredToken)"}, "aiochris.client.from_chrs.ChrsLogin.token": {"fullname": "aiochris.client.from_chrs.ChrsLogin.token", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogin.token", "kind": "function", "doc": "

\n", "signature": "(self) -> str:", "funcdef": "def"}, "aiochris.client.from_chrs.ChrsLogin.is_for": {"fullname": "aiochris.client.from_chrs.ChrsLogin.is_for", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogin.is_for", "kind": "function", "doc": "

Returns True if this login is for the specified _ChRIS_ user account.

\n", "signature": "(\tself,\taddress: Optional[aiochris.types.ChrisURL],\tusername: Optional[aiochris.types.Username]) -> bool:", "funcdef": "def"}, "aiochris.client.from_chrs.ChrsLogin.to_keyring_username": {"fullname": "aiochris.client.from_chrs.ChrsLogin.to_keyring_username", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogin.to_keyring_username", "kind": "function", "doc": "

Produce the username for this login in the keyring.

\n\n

https://github.com/FNNDSC/chrs/blob/v0.2.4/chrs/src/login/tokenstore.rs#L3

\n", "signature": "(self) -> str:", "funcdef": "def"}, "aiochris.client.from_chrs.ChrsLogins": {"fullname": "aiochris.client.from_chrs.ChrsLogins", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogins", "kind": "class", "doc": "

Logins saved by chrs.

\n\n

https://github.com/FNNDSC/chrs/blob/v0.2.4/chrs/src/login/saved.rs#L18-L22

\n"}, "aiochris.client.from_chrs.ChrsLogins.__init__": {"fullname": "aiochris.client.from_chrs.ChrsLogins.__init__", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogins.__init__", "kind": "function", "doc": "

\n", "signature": "(cubes: list[aiochris.client.from_chrs.ChrsLogin])"}, "aiochris.client.from_chrs.ChrsLogins.cubes": {"fullname": "aiochris.client.from_chrs.ChrsLogins.cubes", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogins.cubes", "kind": "variable", "doc": "

Saved logins in reverse order of preference.

\n", "annotation": ": list[aiochris.client.from_chrs.ChrsLogin]"}, "aiochris.client.from_chrs.ChrsLogins.load": {"fullname": "aiochris.client.from_chrs.ChrsLogins.load", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogins.load", "kind": "function", "doc": "

\n", "signature": "(cls, path: pathlib.Path) -> aiochris.client.from_chrs.ChrsLogins:", "funcdef": "def"}, "aiochris.client.from_chrs.ChrsLogins.get_token_for": {"fullname": "aiochris.client.from_chrs.ChrsLogins.get_token_for", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsLogins.get_token_for", "kind": "function", "doc": "

Get token for a login.

\n", "signature": "(\tself,\taddress: Union[str, aiochris.types.ChrisURL, NoneType] = None,\tusername: Union[str, aiochris.types.Username, NoneType] = None) -> Optional[tuple[aiochris.types.ChrisURL, str]]:", "funcdef": "def"}, "aiochris.client.from_chrs.ChrsKeyringError": {"fullname": "aiochris.client.from_chrs.ChrsKeyringError", "modulename": "aiochris.client.from_chrs", "qualname": "ChrsKeyringError", "kind": "class", "doc": "

Error interacting with Keyring.

\n", "bases": "builtins.Exception"}, "aiochris.client.normal": {"fullname": "aiochris.client.normal", "modulename": "aiochris.client.normal", "kind": "module", "doc": "

\n"}, "aiochris.client.normal.ChrisClient": {"fullname": "aiochris.client.normal.ChrisClient", "modulename": "aiochris.client.normal", "qualname": "ChrisClient", "kind": "class", "doc": "

A normal user ChRIS client, who may upload files and create plugin instances.

\n", "bases": "aiochris.client.authed.AuthenticatedClient[aiochris.models.collection_links.CollectionLinks, 'ChrisClient']"}, "aiochris.client.normal.ChrisClient.create_user": {"fullname": "aiochris.client.normal.ChrisClient.create_user", "modulename": "aiochris.client.normal", "qualname": "ChrisClient.create_user", "kind": "function", "doc": "

\n", "signature": "(\tcls,\turl: Union[aiochris.types.ChrisURL, str],\tusername: Union[aiochris.types.Username, str],\tpassword: Union[aiochris.types.Password, str],\temail: str,\tsession: Optional[aiohttp.client.ClientSession] = None) -> aiochris.models.data.UserData:", "funcdef": "async def"}, "aiochris.errors": {"fullname": "aiochris.errors", "modulename": "aiochris.errors", "kind": "module", "doc": "

\n"}, "aiochris.errors.raise_for_status": {"fullname": "aiochris.errors.raise_for_status", "modulename": "aiochris.errors", "qualname": "raise_for_status", "kind": "function", "doc": "

Raises custom exceptions.

\n", "signature": "(res: aiohttp.client_reqrep.ClientResponse) -> None:", "funcdef": "async def"}, "aiochris.errors.BaseClientError": {"fullname": "aiochris.errors.BaseClientError", "modulename": "aiochris.errors", "qualname": "BaseClientError", "kind": "class", "doc": "

Common base class for all non-exit exceptions.

\n", "bases": "builtins.Exception"}, "aiochris.errors.ResponseError": {"fullname": "aiochris.errors.ResponseError", "modulename": "aiochris.errors", "qualname": "ResponseError", "kind": "class", "doc": "

Common base class for all non-exit exceptions.

\n", "bases": "BaseClientError"}, "aiochris.errors.BadRequestError": {"fullname": "aiochris.errors.BadRequestError", "modulename": "aiochris.errors", "qualname": "BadRequestError", "kind": "class", "doc": "

Common base class for all non-exit exceptions.

\n", "bases": "ResponseError"}, "aiochris.errors.InternalServerError": {"fullname": "aiochris.errors.InternalServerError", "modulename": "aiochris.errors", "qualname": "InternalServerError", "kind": "class", "doc": "

Common base class for all non-exit exceptions.

\n", "bases": "ResponseError"}, "aiochris.errors.IncorrectLoginError": {"fullname": "aiochris.errors.IncorrectLoginError", "modulename": "aiochris.errors", "qualname": "IncorrectLoginError", "kind": "class", "doc": "

Common base class for all non-exit exceptions.

\n", "bases": "BaseClientError"}, "aiochris.errors.NonsenseResponseError": {"fullname": "aiochris.errors.NonsenseResponseError", "modulename": "aiochris.errors", "qualname": "NonsenseResponseError", "kind": "class", "doc": "

CUBE returned data which does not make sense.

\n", "bases": "ResponseError"}, "aiochris.models": {"fullname": "aiochris.models", "modulename": "aiochris.models", "kind": "module", "doc": "

\n"}, "aiochris.models.collection_links": {"fullname": "aiochris.models.collection_links", "modulename": "aiochris.models.collection_links", "kind": "module", "doc": "

\n"}, "aiochris.models.collection_links.AbstractCollectionLinks": {"fullname": "aiochris.models.collection_links.AbstractCollectionLinks", "modulename": "aiochris.models.collection_links", "qualname": "AbstractCollectionLinks", "kind": "class", "doc": "

\n"}, "aiochris.models.collection_links.AbstractCollectionLinks.__init__": {"fullname": "aiochris.models.collection_links.AbstractCollectionLinks.__init__", "modulename": "aiochris.models.collection_links", "qualname": "AbstractCollectionLinks.__init__", "kind": "function", "doc": "

\n", "signature": "()"}, "aiochris.models.collection_links.AbstractCollectionLinks.has_field": {"fullname": "aiochris.models.collection_links.AbstractCollectionLinks.has_field", "modulename": "aiochris.models.collection_links", "qualname": "AbstractCollectionLinks.has_field", "kind": "function", "doc": "

\n", "signature": "(cls, field_name: str) -> bool:", "funcdef": "def"}, "aiochris.models.collection_links.AbstractCollectionLinks.get": {"fullname": "aiochris.models.collection_links.AbstractCollectionLinks.get", "modulename": "aiochris.models.collection_links", "qualname": "AbstractCollectionLinks.get", "kind": "function", "doc": "

\n", "signature": "(self, collection_name: str) -> str:", "funcdef": "def"}, "aiochris.models.collection_links.AnonymousCollectionLinks": {"fullname": "aiochris.models.collection_links.AnonymousCollectionLinks", "modulename": "aiochris.models.collection_links", "qualname": "AnonymousCollectionLinks", "kind": "class", "doc": "

\n", "bases": "AbstractCollectionLinks"}, "aiochris.models.collection_links.AnonymousCollectionLinks.__init__": {"fullname": "aiochris.models.collection_links.AnonymousCollectionLinks.__init__", "modulename": "aiochris.models.collection_links", "qualname": "AnonymousCollectionLinks.__init__", "kind": "function", "doc": "

\n", "signature": "(\tchrisinstance: aiochris.types.ApiUrl,\tfiles: aiochris.types.ApiUrl,\tcompute_resources: aiochris.types.ApiUrl,\tplugin_metas: aiochris.types.ApiUrl,\tplugins: aiochris.types.ApiUrl,\tplugin_instances: aiochris.types.ApiUrl,\tpipelines: aiochris.types.ApiUrl,\tpipeline_instances: aiochris.types.ApiUrl,\tworkflows: aiochris.types.ApiUrl,\ttags: aiochris.types.ApiUrl,\tuploadedfiles: aiochris.types.ApiUrl,\tpacsfiles: aiochris.types.ApiUrl,\tservicefiles: aiochris.types.ApiUrl,\tfilebrowser: aiochris.types.ApiUrl)"}, "aiochris.models.collection_links.CollectionLinks": {"fullname": "aiochris.models.collection_links.CollectionLinks", "modulename": "aiochris.models.collection_links", "qualname": "CollectionLinks", "kind": "class", "doc": "

\n", "bases": "AnonymousCollectionLinks"}, "aiochris.models.collection_links.CollectionLinks.__init__": {"fullname": "aiochris.models.collection_links.CollectionLinks.__init__", "modulename": "aiochris.models.collection_links", "qualname": "CollectionLinks.__init__", "kind": "function", "doc": "

\n", "signature": "(\tchrisinstance: aiochris.types.ApiUrl,\tfiles: aiochris.types.ApiUrl,\tcompute_resources: aiochris.types.ApiUrl,\tplugin_metas: aiochris.types.ApiUrl,\tplugins: aiochris.types.ApiUrl,\tplugin_instances: aiochris.types.ApiUrl,\tpipelines: aiochris.types.ApiUrl,\tpipeline_instances: aiochris.types.ApiUrl,\tworkflows: aiochris.types.ApiUrl,\ttags: aiochris.types.ApiUrl,\tuploadedfiles: aiochris.types.ApiUrl,\tpacsfiles: aiochris.types.ApiUrl,\tservicefiles: aiochris.types.ApiUrl,\tfilebrowser: aiochris.types.ApiUrl,\tuser: aiochris.types.UserUrl)"}, "aiochris.models.collection_links.AdminCollectionLinks": {"fullname": "aiochris.models.collection_links.AdminCollectionLinks", "modulename": "aiochris.models.collection_links", "qualname": "AdminCollectionLinks", "kind": "class", "doc": "

\n", "bases": "CollectionLinks"}, "aiochris.models.collection_links.AdminCollectionLinks.__init__": {"fullname": "aiochris.models.collection_links.AdminCollectionLinks.__init__", "modulename": "aiochris.models.collection_links", "qualname": "AdminCollectionLinks.__init__", "kind": "function", "doc": "

\n", "signature": "(\tchrisinstance: aiochris.types.ApiUrl,\tfiles: aiochris.types.ApiUrl,\tcompute_resources: aiochris.types.ApiUrl,\tplugin_metas: aiochris.types.ApiUrl,\tplugins: aiochris.types.ApiUrl,\tplugin_instances: aiochris.types.ApiUrl,\tpipelines: aiochris.types.ApiUrl,\tpipeline_instances: aiochris.types.ApiUrl,\tworkflows: aiochris.types.ApiUrl,\ttags: aiochris.types.ApiUrl,\tuploadedfiles: aiochris.types.ApiUrl,\tpacsfiles: aiochris.types.ApiUrl,\tservicefiles: aiochris.types.ApiUrl,\tfilebrowser: aiochris.types.ApiUrl,\tuser: aiochris.types.UserUrl,\tadmin: aiochris.types.AdminUrl)"}, "aiochris.models.collection_links.AdminApiCollectionLinks": {"fullname": "aiochris.models.collection_links.AdminApiCollectionLinks", "modulename": "aiochris.models.collection_links", "qualname": "AdminApiCollectionLinks", "kind": "class", "doc": "

\n", "bases": "AbstractCollectionLinks"}, "aiochris.models.collection_links.AdminApiCollectionLinks.__init__": {"fullname": "aiochris.models.collection_links.AdminApiCollectionLinks.__init__", "modulename": "aiochris.models.collection_links", "qualname": "AdminApiCollectionLinks.__init__", "kind": "function", "doc": "

\n", "signature": "(compute_resources: aiochris.types.ApiUrl)"}, "aiochris.models.data": {"fullname": "aiochris.models.data", "modulename": "aiochris.models.data", "kind": "module", "doc": "

Dataclasses describing objects returned from CUBE.

\n\n

These classes are extended in the modules aiochris.models.logged_in\nand aiochris.models.public with methods to get objects from links.

\n"}, "aiochris.models.data.UserData": {"fullname": "aiochris.models.data.UserData", "modulename": "aiochris.models.data", "qualname": "UserData", "kind": "class", "doc": "

A CUBE user.

\n"}, "aiochris.models.data.UserData.__init__": {"fullname": "aiochris.models.data.UserData.__init__", "modulename": "aiochris.models.data", "qualname": "UserData.__init__", "kind": "function", "doc": "

\n", "signature": "(\turl: aiochris.types.UserUrl,\tid: aiochris.types.UserId,\tusername: aiochris.types.Username,\temail: str)"}, "aiochris.models.data.PluginInstanceData": {"fullname": "aiochris.models.data.PluginInstanceData", "modulename": "aiochris.models.data", "qualname": "PluginInstanceData", "kind": "class", "doc": "

A plugin instance in _ChRIS_ is a computing job, i.e. an attempt to run\na computation (a non-interactive command-line app) to produce data.

\n", "bases": "aiochris.link.linked.LinkedModel"}, "aiochris.models.data.PluginInstanceData.__init__": {"fullname": "aiochris.models.data.PluginInstanceData.__init__", "modulename": "aiochris.models.data", "qualname": "PluginInstanceData.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.PluginInstanceUrl,\tid: aiochris.types.PluginInstanceId,\ttitle: str,\tcompute_resource_name: aiochris.types.ComputeResourceName,\tplugin_id: aiochris.types.PluginId,\tplugin_name: aiochris.types.PluginName,\tplugin_version: aiochris.types.PluginVersion,\tplugin_type: aiochris.enums.PluginType,\tpipeline_inst: Optional[int],\tfeed_id: aiochris.types.FeedId,\tstart_date: datetime.datetime,\tend_date: datetime.datetime,\toutput_path: aiochris.types.CubeFilePath,\tstatus: aiochris.enums.Status,\tsummary: str,\traw: str,\towner_username: aiochris.types.Username,\tcpu_limit: int,\tmemory_limit: int,\tnumber_of_workers: int,\tgpu_limit: int,\terror_code: aiochris.types.CUBEErrorCode,\tprevious: Optional[aiochris.types.PluginInstanceUrl],\tfeed: aiochris.types.FeedUrl,\tplugin: aiochris.types.PluginUrl,\tdescendants: aiochris.types.DescendantsUrl,\tfiles: aiochris.types.FilesUrl,\tparameters: aiochris.types.PluginInstanceParametersUrl,\tcompute_resource: aiochris.types.ComputeResourceUrl,\tsplits: aiochris.types.SplitsUrl,\tprevious_id: Optional[int] = None,\tsize: Optional[int] = None,\ttemplate: Optional[dict] = None)"}, "aiochris.models.data.PluginInstanceData.previous_id": {"fullname": "aiochris.models.data.PluginInstanceData.previous_id", "modulename": "aiochris.models.data", "qualname": "PluginInstanceData.previous_id", "kind": "variable", "doc": "

FS plugins will not produce a previous_id value\n(even though they will return \"previous\": null)

\n", "annotation": ": Optional[int]", "default_value": " = None"}, "aiochris.models.data.PluginInstanceData.size": {"fullname": "aiochris.models.data.PluginInstanceData.size", "modulename": "aiochris.models.data", "qualname": "PluginInstanceData.size", "kind": "variable", "doc": "

IDK what it is the size of.

\n\n

This field shows up when the plugin instance is maybe done,\nbut not when the plugin instance is created.

\n", "annotation": ": Optional[int]", "default_value": " = None"}, "aiochris.models.data.PluginInstanceData.template": {"fullname": "aiochris.models.data.PluginInstanceData.template", "modulename": "aiochris.models.data", "qualname": "PluginInstanceData.template", "kind": "variable", "doc": "

Present only when getting a plugin instance.

\n", "annotation": ": Optional[dict]", "default_value": " = None"}, "aiochris.models.data.FeedData": {"fullname": "aiochris.models.data.FeedData", "modulename": "aiochris.models.data", "qualname": "FeedData", "kind": "class", "doc": "

\n", "bases": "aiochris.link.linked.LinkedModel"}, "aiochris.models.data.FeedData.__init__": {"fullname": "aiochris.models.data.FeedData.__init__", "modulename": "aiochris.models.data", "qualname": "FeedData.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.FeedUrl,\tid: aiochris.types.FeedId,\tcreation_date: datetime.datetime,\tmodification_date: datetime.datetime,\tname: str,\tcreator_username: aiochris.types.Username,\tcreated_jobs: int,\twaiting_jobs: int,\tscheduled_jobs: int,\tstarted_jobs: int,\tregistering_jobs: int,\tfinished_jobs: int,\terrored_jobs: int,\tcancelled_jobs: int,\towner: list[aiochris.types.UserUrl],\tnote: aiochris.types.NoteUrl,\ttags: aiochris.types.TagsUrl,\ttaggings: aiochris.types.TaggingsUrl,\tcomments: aiochris.types.CommentsUrl,\tfiles: aiochris.types.FilesUrl,\tplugin_instances: aiochris.types.PluginInstancesUrl)"}, "aiochris.models.data.FeedNoteData": {"fullname": "aiochris.models.data.FeedNoteData", "modulename": "aiochris.models.data", "qualname": "FeedNoteData", "kind": "class", "doc": "

\n", "bases": "aiochris.link.linked.LinkedModel"}, "aiochris.models.data.FeedNoteData.__init__": {"fullname": "aiochris.models.data.FeedNoteData.__init__", "modulename": "aiochris.models.data", "qualname": "FeedNoteData.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.FeedUrl,\tid: aiochris.types.NoteId,\ttitle: str,\tcontent: str,\tfeed: aiochris.types.FeedUrl)"}, "aiochris.models.logged_in": {"fullname": "aiochris.models.logged_in", "modulename": "aiochris.models.logged_in", "kind": "module", "doc": "

Subclasses of classes from aiochris.models.data which are returned\nfrom an aiochris.client.authed.AuthenticatedClient.\nThese classes may have read-write functionality on the ChRIS API.

\n"}, "aiochris.models.logged_in.User": {"fullname": "aiochris.models.logged_in.User", "modulename": "aiochris.models.logged_in", "qualname": "User", "kind": "class", "doc": "

\n", "bases": "aiochris.models.data.UserData, aiochris.link.linked.LinkedModel"}, "aiochris.models.logged_in.User.__init__": {"fullname": "aiochris.models.logged_in.User.__init__", "modulename": "aiochris.models.logged_in", "qualname": "User.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.UserUrl,\tid: aiochris.types.UserId,\tusername: aiochris.types.Username,\temail: str)"}, "aiochris.models.logged_in.File": {"fullname": "aiochris.models.logged_in.File", "modulename": "aiochris.models.logged_in", "qualname": "File", "kind": "class", "doc": "

A file in CUBE.

\n", "bases": "aiochris.link.linked.LinkedModel"}, "aiochris.models.logged_in.File.__init__": {"fullname": "aiochris.models.logged_in.File.__init__", "modulename": "aiochris.models.logged_in", "qualname": "File.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: str,\tfname: aiochris.types.FileFname,\tfsize: int,\tfile_resource: aiochris.types.FileResourceUrl)"}, "aiochris.models.logged_in.File.parent": {"fullname": "aiochris.models.logged_in.File.parent", "modulename": "aiochris.models.logged_in", "qualname": "File.parent", "kind": "variable", "doc": "

Get the parent (directory) of a file.

\n\n
Examples
\n\n
\n
assert file.fname == 'chris/feed_4/pl-dircopy_7/data/hello-world.txt'\nassert file.parent == 'chris/feed_4/pl-dircopy_7/data'\n
\n
\n", "annotation": ": str"}, "aiochris.models.logged_in.PACSFile": {"fullname": "aiochris.models.logged_in.PACSFile", "modulename": "aiochris.models.logged_in", "qualname": "PACSFile", "kind": "class", "doc": "

A file from a PACS server which was pushed into ChRIS.\nA PACSFile is usually a DICOM file.

\n\n

See https://github.com/FNNDSC/ChRIS_ultron_backEnd/blob/a1bf499144df79622eb3f8a459cdb80d8e34cb04/chris_backend/pacsfiles/models.py#L16-L33

\n", "bases": "File"}, "aiochris.models.logged_in.PACSFile.__init__": {"fullname": "aiochris.models.logged_in.PACSFile.__init__", "modulename": "aiochris.models.logged_in", "qualname": "PACSFile.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: str,\tfname: aiochris.types.FileFname,\tfsize: int,\tfile_resource: aiochris.types.FileResourceUrl,\tPatientID: str,\tPatientName: str,\tPatientBirthDate: str,\tPatientAge: int,\tPatientSex: str,\tStudyDate: str,\tAccessionNumber: str,\tModality: str,\tProtocolName: str,\tStudyInstanceUID: str,\tStudyDescription: str,\tSeriesInstanceUID: str,\tSeriesDescription: str,\tpacs_identifier: str)"}, "aiochris.models.logged_in.PluginInstance": {"fullname": "aiochris.models.logged_in.PluginInstance", "modulename": "aiochris.models.logged_in", "qualname": "PluginInstance", "kind": "class", "doc": "

\n", "bases": "aiochris.models.data.PluginInstanceData"}, "aiochris.models.logged_in.PluginInstance.__init__": {"fullname": "aiochris.models.logged_in.PluginInstance.__init__", "modulename": "aiochris.models.logged_in", "qualname": "PluginInstance.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.PluginInstanceUrl,\tid: aiochris.types.PluginInstanceId,\ttitle: str,\tcompute_resource_name: aiochris.types.ComputeResourceName,\tplugin_id: aiochris.types.PluginId,\tplugin_name: aiochris.types.PluginName,\tplugin_version: aiochris.types.PluginVersion,\tplugin_type: aiochris.enums.PluginType,\tpipeline_inst: Optional[int],\tfeed_id: aiochris.types.FeedId,\tstart_date: datetime.datetime,\tend_date: datetime.datetime,\toutput_path: aiochris.types.CubeFilePath,\tstatus: aiochris.enums.Status,\tsummary: str,\traw: str,\towner_username: aiochris.types.Username,\tcpu_limit: int,\tmemory_limit: int,\tnumber_of_workers: int,\tgpu_limit: int,\terror_code: aiochris.types.CUBEErrorCode,\tprevious: Optional[aiochris.types.PluginInstanceUrl],\tfeed: aiochris.types.FeedUrl,\tplugin: aiochris.types.PluginUrl,\tdescendants: aiochris.types.DescendantsUrl,\tfiles: aiochris.types.FilesUrl,\tparameters: aiochris.types.PluginInstanceParametersUrl,\tcompute_resource: aiochris.types.ComputeResourceUrl,\tsplits: aiochris.types.SplitsUrl,\tprevious_id: Optional[int] = None,\tsize: Optional[int] = None,\ttemplate: Optional[dict] = None)"}, "aiochris.models.logged_in.PluginInstance.get_feed": {"fullname": "aiochris.models.logged_in.PluginInstance.get_feed", "modulename": "aiochris.models.logged_in", "qualname": "PluginInstance.get_feed", "kind": "function", "doc": "

Get the feed this plugin instance belongs to.

\n", "signature": "(self) -> aiochris.models.logged_in.Feed:", "funcdef": "async def"}, "aiochris.models.logged_in.PluginInstance.get": {"fullname": "aiochris.models.logged_in.PluginInstance.get", "modulename": "aiochris.models.logged_in", "qualname": "PluginInstance.get", "kind": "function", "doc": "

Get this plugin's state (again).

\n", "signature": "(self) -> aiochris.models.logged_in.PluginInstance:", "funcdef": "async def"}, "aiochris.models.logged_in.PluginInstance.set": {"fullname": "aiochris.models.logged_in.PluginInstance.set", "modulename": "aiochris.models.logged_in", "qualname": "PluginInstance.set", "kind": "function", "doc": "

Set the title or status of this plugin instance.

\n", "signature": "(\tself,\ttitle: Optional[str] = None,\tstatus: Optional[str] = None) -> aiochris.models.logged_in.PluginInstance:", "funcdef": "async def"}, "aiochris.models.logged_in.PluginInstance.delete": {"fullname": "aiochris.models.logged_in.PluginInstance.delete", "modulename": "aiochris.models.logged_in", "qualname": "PluginInstance.delete", "kind": "function", "doc": "

Delete this plugin instance.

\n", "signature": "(self) -> None:", "funcdef": "async def"}, "aiochris.models.logged_in.PluginInstance.wait": {"fullname": "aiochris.models.logged_in.PluginInstance.wait", "modulename": "aiochris.models.logged_in", "qualname": "PluginInstance.wait", "kind": "function", "doc": "

Wait until this plugin instance finishes (or some other desired status).

\n\n
Parameters
\n\n\n\n
Returns
\n\n\n", "signature": "(\tself,\tstatus: Union[aiochris.enums.Status, Sequence[aiochris.enums.Status]] = (<Status.finishedSuccessfully: 'finishedSuccessfully'>, <Status.finishedWithError: 'finishedWithError'>, <Status.cancelled: 'cancelled'>),\ttimeout: float = 300,\tinterval: float = 5) -> tuple[float, aiochris.models.logged_in.PluginInstance]:", "funcdef": "async def"}, "aiochris.models.logged_in.FeedNote": {"fullname": "aiochris.models.logged_in.FeedNote", "modulename": "aiochris.models.logged_in", "qualname": "FeedNote", "kind": "class", "doc": "

\n", "bases": "aiochris.models.data.FeedNoteData"}, "aiochris.models.logged_in.FeedNote.__init__": {"fullname": "aiochris.models.logged_in.FeedNote.__init__", "modulename": "aiochris.models.logged_in", "qualname": "FeedNote.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.FeedUrl,\tid: aiochris.types.NoteId,\ttitle: str,\tcontent: str,\tfeed: aiochris.types.FeedUrl)"}, "aiochris.models.logged_in.FeedNote.get_feed": {"fullname": "aiochris.models.logged_in.FeedNote.get_feed", "modulename": "aiochris.models.logged_in", "qualname": "FeedNote.get_feed", "kind": "function", "doc": "

Get the feed this note belongs to.

\n", "signature": "(self) -> aiochris.models.logged_in.Feed:", "funcdef": "async def"}, "aiochris.models.logged_in.FeedNote.set": {"fullname": "aiochris.models.logged_in.FeedNote.set", "modulename": "aiochris.models.logged_in", "qualname": "FeedNote.set", "kind": "function", "doc": "

Change this note.

\n", "signature": "(\tself,\ttitle: Optional[str] = None,\tcontent: Optional[str] = None) -> aiochris.models.logged_in.FeedNote:", "funcdef": "async def"}, "aiochris.models.logged_in.Feed": {"fullname": "aiochris.models.logged_in.Feed", "modulename": "aiochris.models.logged_in", "qualname": "Feed", "kind": "class", "doc": "

A feed of a logged in user.

\n", "bases": "aiochris.models.data.FeedData"}, "aiochris.models.logged_in.Feed.__init__": {"fullname": "aiochris.models.logged_in.Feed.__init__", "modulename": "aiochris.models.logged_in", "qualname": "Feed.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.FeedUrl,\tid: aiochris.types.FeedId,\tcreation_date: datetime.datetime,\tmodification_date: datetime.datetime,\tname: str,\tcreator_username: aiochris.types.Username,\tcreated_jobs: int,\twaiting_jobs: int,\tscheduled_jobs: int,\tstarted_jobs: int,\tregistering_jobs: int,\tfinished_jobs: int,\terrored_jobs: int,\tcancelled_jobs: int,\towner: list[aiochris.types.UserUrl],\tnote: aiochris.types.NoteUrl,\ttags: aiochris.types.TagsUrl,\ttaggings: aiochris.types.TaggingsUrl,\tcomments: aiochris.types.CommentsUrl,\tfiles: aiochris.types.FilesUrl,\tplugin_instances: aiochris.types.PluginInstancesUrl)"}, "aiochris.models.logged_in.Feed.set": {"fullname": "aiochris.models.logged_in.Feed.set", "modulename": "aiochris.models.logged_in", "qualname": "Feed.set", "kind": "function", "doc": "

Change the name or the owner of this feed.

\n\n
Parameters
\n\n\n", "signature": "(\tself,\tname: Optional[str] = None,\towner: Union[str, aiochris.types.Username, NoneType] = None) -> aiochris.models.logged_in.Feed:", "funcdef": "async def"}, "aiochris.models.logged_in.Feed.get_note": {"fullname": "aiochris.models.logged_in.Feed.get_note", "modulename": "aiochris.models.logged_in", "qualname": "Feed.get_note", "kind": "function", "doc": "

\n", "signature": "(self) -> aiochris.models.logged_in.FeedNote:", "funcdef": "async def"}, "aiochris.models.logged_in.Plugin": {"fullname": "aiochris.models.logged_in.Plugin", "modulename": "aiochris.models.logged_in", "qualname": "Plugin", "kind": "class", "doc": "

A ChRIS plugin. Create a plugin instance of this plugin to run it.

\n", "bases": "aiochris.models.public.PublicPlugin"}, "aiochris.models.logged_in.Plugin.__init__": {"fullname": "aiochris.models.logged_in.Plugin.__init__", "modulename": "aiochris.models.logged_in", "qualname": "Plugin.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.PluginUrl,\tid: aiochris.types.PluginId,\tname: aiochris.types.PluginName,\tversion: aiochris.types.PluginVersion,\tdock_image: aiochris.types.ImageTag,\tpublic_repo: str,\tcompute_resources: aiochris.types.ComputeResourceUrl,\tparameters: aiochris.types.PluginParametersUrl,\tplugin_type: aiochris.enums.PluginType,\tinstances: aiochris.types.ApiUrl)"}, "aiochris.models.logged_in.Plugin.create_instance": {"fullname": "aiochris.models.logged_in.Plugin.create_instance", "modulename": "aiochris.models.logged_in", "qualname": "Plugin.create_instance", "kind": "function", "doc": "

Create a plugin instance, i.e. \"run\" this plugin.

\n\n

Parameters common to all plugins are described below.\nNot all valid parameters are listed, since each plugin's parameters are different.\nSome plugins have required parameters too.\nTo list all possible parameters, make a GET request to the specific plugin's instances link.

\n\n
Parameters
\n\n\n", "signature": "(\tself,\tprevious: Optional[aiochris.models.logged_in.PluginInstance] = None,\t**kwargs) -> aiochris.models.logged_in.PluginInstance:", "funcdef": "async def"}, "aiochris.models.public": {"fullname": "aiochris.models.public", "modulename": "aiochris.models.public", "kind": "module", "doc": "

Read-only models for CUBE resources.

\n"}, "aiochris.models.public.ComputeResource": {"fullname": "aiochris.models.public.ComputeResource", "modulename": "aiochris.models.public", "qualname": "ComputeResource", "kind": "class", "doc": "

\n"}, "aiochris.models.public.ComputeResource.__init__": {"fullname": "aiochris.models.public.ComputeResource.__init__", "modulename": "aiochris.models.public", "qualname": "ComputeResource.__init__", "kind": "function", "doc": "

\n", "signature": "(\turl: aiochris.types.ApiUrl,\tid: aiochris.types.ComputeResourceId,\tcreation_date: str,\tmodification_date: str,\tname: aiochris.types.ComputeResourceName,\tcompute_url: aiochris.types.PfconUrl,\tcompute_auth_url: str,\tdescription: str,\tmax_job_exec_seconds: int)"}, "aiochris.models.public.PluginParameter": {"fullname": "aiochris.models.public.PluginParameter", "modulename": "aiochris.models.public", "qualname": "PluginParameter", "kind": "class", "doc": "

Information about a parameter (a command-line option/flag) of a plugin.

\n", "bases": "aiochris.link.linked.LinkedModel"}, "aiochris.models.public.PluginParameter.__init__": {"fullname": "aiochris.models.public.PluginParameter.__init__", "modulename": "aiochris.models.public", "qualname": "PluginParameter.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.PluginParameterUrl,\tid: aiochris.types.ParameterGlobalId,\tname: aiochris.types.ParameterName,\ttype: Union[str, int, float, bool],\toptional: bool,\tdefault: Union[str, int, float, bool, NoneType],\tflag: str,\tshort_flag: str,\taction: Literal['store', 'store_true', 'store_false'],\thelp: str,\tui_exposed: bool,\tplugin: aiochris.types.PluginUrl)"}, "aiochris.models.public.PublicPlugin": {"fullname": "aiochris.models.public.PublicPlugin", "modulename": "aiochris.models.public", "qualname": "PublicPlugin", "kind": "class", "doc": "

A ChRIS plugin.

\n", "bases": "aiochris.link.linked.LinkedModel"}, "aiochris.models.public.PublicPlugin.__init__": {"fullname": "aiochris.models.public.PublicPlugin.__init__", "modulename": "aiochris.models.public", "qualname": "PublicPlugin.__init__", "kind": "function", "doc": "

\n", "signature": "(\ts: aiohttp.client.ClientSession,\tmax_search_requests: int,\turl: aiochris.types.PluginUrl,\tid: aiochris.types.PluginId,\tname: aiochris.types.PluginName,\tversion: aiochris.types.PluginVersion,\tdock_image: aiochris.types.ImageTag,\tpublic_repo: str,\tcompute_resources: aiochris.types.ComputeResourceUrl,\tparameters: aiochris.types.PluginParametersUrl,\tplugin_type: aiochris.enums.PluginType)"}, "aiochris.models.public.PublicPlugin.get_compute_resources": {"fullname": "aiochris.models.public.PublicPlugin.get_compute_resources", "modulename": "aiochris.models.public", "qualname": "PublicPlugin.get_compute_resources", "kind": "function", "doc": "

Get the compute resources this plugin is registered to.

\n", "signature": "(\tself) -> aiochris.util.search.Search[aiochris.models.public.ComputeResource]:", "funcdef": "def"}, "aiochris.models.public.PublicPlugin.get_parameters": {"fullname": "aiochris.models.public.PublicPlugin.get_parameters", "modulename": "aiochris.models.public", "qualname": "PublicPlugin.get_parameters", "kind": "function", "doc": "

Get the parameters of this plugin.

\n", "signature": "(\tself) -> aiochris.util.search.Search[aiochris.models.public.PluginParameter]:", "funcdef": "def"}, "aiochris.models.public.PublicPlugin.print_help": {"fullname": "aiochris.models.public.PublicPlugin.print_help", "modulename": "aiochris.models.public", "qualname": "PublicPlugin.print_help", "kind": "function", "doc": "

Display the help messages for this plugin's parameters.

\n", "signature": "(self, out: <class 'TextIO'> = <_io.StringIO object>) -> None:", "funcdef": "async def"}, "aiochris.types": {"fullname": "aiochris.types", "modulename": "aiochris.types", "kind": "module", "doc": "

NewTypes for ChRIS models.

\n"}, "aiochris.types.Username": {"fullname": "aiochris.types.Username", "modulename": "aiochris.types", "qualname": "Username", "kind": "variable", "doc": "

ChRIS user account username

\n", "default_value": " = aiochris.types.Username"}, "aiochris.types.Password": {"fullname": "aiochris.types.Password", "modulename": "aiochris.types", "qualname": "Password", "kind": "variable", "doc": "

ChRIS user account password

\n", "default_value": " = aiochris.types.Password"}, "aiochris.types.ChrisURL": {"fullname": "aiochris.types.ChrisURL", "modulename": "aiochris.types", "qualname": "ChrisURL", "kind": "variable", "doc": "

ChRIS backend API base URL

\n", "default_value": " = aiochris.types.ChrisURL"}, "aiochris.types.ApiUrl": {"fullname": "aiochris.types.ApiUrl", "modulename": "aiochris.types", "qualname": "ApiUrl", "kind": "variable", "doc": "

Any CUBE URL which I am too lazy to be more specific about.

\n", "default_value": " = aiochris.types.ApiUrl"}, "aiochris.types.ResourceId": {"fullname": "aiochris.types.ResourceId", "modulename": "aiochris.types", "qualname": "ResourceId", "kind": "variable", "doc": "

ID number which I am too lazy to be more specific about.

\n", "default_value": " = aiochris.types.ResourceId"}, "aiochris.types.PluginName": {"fullname": "aiochris.types.PluginName", "modulename": "aiochris.types", "qualname": "PluginName", "kind": "variable", "doc": "

Name of a ChRIS plugin

\n", "default_value": " = aiochris.types.PluginName"}, "aiochris.types.ImageTag": {"fullname": "aiochris.types.ImageTag", "modulename": "aiochris.types", "qualname": "ImageTag", "kind": "variable", "doc": "

OCI image tag (informally, a Docker Image name)

\n", "default_value": " = aiochris.types.ImageTag"}, "aiochris.types.PluginVersion": {"fullname": "aiochris.types.PluginVersion", "modulename": "aiochris.types", "qualname": "PluginVersion", "kind": "variable", "doc": "

Version string of a ChRIS plugin

\n", "default_value": " = aiochris.types.PluginVersion"}, "aiochris.types.PluginUrl": {"fullname": "aiochris.types.PluginUrl", "modulename": "aiochris.types", "qualname": "PluginUrl", "kind": "variable", "doc": "

URL of a ChRIS plugin.

\n\n

Examples

\n\n\n", "default_value": " = aiochris.types.PluginUrl"}, "aiochris.types.AdminUrl": {"fullname": "aiochris.types.AdminUrl", "modulename": "aiochris.types", "qualname": "AdminUrl", "kind": "variable", "doc": "

A admin resource URL ending with /chris-admin/api/v1/

\n", "default_value": " = aiochris.types.AdminUrl"}, "aiochris.types.NoteId": {"fullname": "aiochris.types.NoteId", "modulename": "aiochris.types", "qualname": "NoteId", "kind": "variable", "doc": "

A feed note's ID number.

\n", "default_value": " = aiochris.types.NoteId"}, "aiochris.types.NoteUrl": {"fullname": "aiochris.types.NoteUrl", "modulename": "aiochris.types", "qualname": "NoteUrl", "kind": "variable", "doc": "

A feed's note URL.

\n\n

Examples

\n\n\n", "default_value": " = aiochris.types.NoteUrl"}, "aiochris.util": {"fullname": "aiochris.util", "modulename": "aiochris.util", "kind": "module", "doc": "

\n"}, "aiochris.util.search": {"fullname": "aiochris.util.search", "modulename": "aiochris.util.search", "kind": "module", "doc": "

\n"}, "aiochris.util.search.Search": {"fullname": "aiochris.util.search.Search", "modulename": "aiochris.util.search", "qualname": "Search", "kind": "class", "doc": "

Abstraction over paginated collection responses from CUBE.\nSearch objects are returned by methods for search endpoints of the CUBE API.\nIt is an asynchronous iterable\nwhich produces items from responses that return multiple results.\nHTTP requests are fired as-neede, they happen in the background during iteration.\nNo request is made before the first time a Search object is called.

\n\n
\n\n
Pagination is handled internally and automatically.
\n\n

The query parameters limit and offset can be explicitly given, but they shouldn't.

\n\n
\n\n
Examples
\n\n

Use an async for loop to print the name of every feed:

\n\n
\n
all_feeds = chris.search_feeds()  # returns a Search[Feed]\nasync for feed in all_feeds:\n    print(feed.name)\n
\n
\n", "bases": "typing.Generic[~T], typing.AsyncIterable[~T]"}, "aiochris.util.search.Search.__init__": {"fullname": "aiochris.util.search.Search.__init__", "modulename": "aiochris.util.search", "qualname": "Search.__init__", "kind": "function", "doc": "

\n", "signature": "(\tbase_url: str,\tparams: dict[str, typing.Any],\tclient: aiochris.link.linked.Linked,\tItem: Type[~T],\tmax_requests: int = 100,\tsubpath: str = 'search/')"}, "aiochris.util.search.Search.first": {"fullname": "aiochris.util.search.Search.first", "modulename": "aiochris.util.search", "qualname": "Search.first", "kind": "function", "doc": "

Get the first item.

\n\n
See also
\n\n

get_only : similar use, but more strict

\n", "signature": "(self) -> Optional[~T]:", "funcdef": "async def"}, "aiochris.util.search.Search.get_only": {"fullname": "aiochris.util.search.Search.get_only", "modulename": "aiochris.util.search", "qualname": "Search.get_only", "kind": "function", "doc": "

Get the only item from a search with one result.

\n\n
Examples
\n\n

This method is very commonly used for getting \"one thing\" from CUBE.

\n\n
\n
await chris.search_plugins(name_exact="pl-dircopy", version="2.1.1").get_only()\n
\n
\n\n

In the example above, a search for plugins given (name_exact, version)\nis guaranteed to return either 0 or 1 result.

\n\n
Raises
\n\n\n\n
See also
\n\n

first : does the same thing but without checks.

\n\n
Parameters
\n\n\n", "signature": "(self, allow_multiple=False) -> ~T:", "funcdef": "async def"}, "aiochris.util.search.Search.count": {"fullname": "aiochris.util.search.Search.count", "modulename": "aiochris.util.search", "qualname": "Search.count", "kind": "function", "doc": "

Get the number of items in this collection search.

\n\n
Examples
\n\n

count is useful for rendering a progress bar. TODO example with files

\n", "signature": "(self) -> int:", "funcdef": "async def"}, "aiochris.util.search.acollect": {"fullname": "aiochris.util.search.acollect", "modulename": "aiochris.util.search", "qualname": "acollect", "kind": "function", "doc": "

Simple helper to convert a Search to a list.

\n\n

Using this function is not recommended unless you can assume the collection is small.

\n", "signature": "(async_iterable: AsyncIterable[~T]) -> list[~T]:", "funcdef": "async def"}, "aiochris.util.search.TooMuchPaginationError": {"fullname": "aiochris.util.search.TooMuchPaginationError", "modulename": "aiochris.util.search", "qualname": "TooMuchPaginationError", "kind": "class", "doc": "

Specified maximum number of requests exceeded while retrieving results from a paginated resource.

\n", "bases": "aiochris.errors.BaseClientError"}, "aiochris.util.search.GetOnlyError": {"fullname": "aiochris.util.search.GetOnlyError", "modulename": "aiochris.util.search", "qualname": "GetOnlyError", "kind": "class", "doc": "

Search does not have exactly one result.

\n", "bases": "aiochris.errors.BaseClientError"}, "aiochris.util.search.NoneSearchError": {"fullname": "aiochris.util.search.NoneSearchError", "modulename": "aiochris.util.search", "qualname": "NoneSearchError", "kind": "class", "doc": "

A search expected to have at least one element, has none.

\n", "bases": "GetOnlyError"}, "aiochris.util.search.ManySearchError": {"fullname": "aiochris.util.search.ManySearchError", "modulename": "aiochris.util.search", "qualname": "ManySearchError", "kind": "class", "doc": "

A search expected to have only one result, has several.

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1}}, "df": 4}}}}}, "l": {"docs": {}, "df": 0, "l": {"docs": {"aiochris": {"tf": 1}, "aiochris.client.authed.AuthenticatedClient.upload_file": {"tf": 1}, "aiochris.client.authed.AuthenticatedClient.username": {"tf": 1}, "aiochris.client.base.BaseChrisClient.new": {"tf": 1}, "aiochris.models.data.PluginInstanceData.previous_id": {"tf": 1.4142135623730951}, "aiochris.models.logged_in.PluginInstance.wait": {"tf": 1}}, "df": 6}}}, "o": {"docs": {}, "df": 0, "r": {"docs": {}, "df": 0, "k": {"docs": {}, "df": 0, "s": {"docs": {"aiochris": {"tf": 1.4142135623730951}}, "df": 1}, "i": {"docs": {}, "df": 0, "n": {"docs": {}, "df": 0, "g": {"docs": {"aiochris": {"tf": 1}}, "df": 1}}}}, "l": {"docs": {}, "df": 0, "d": {"docs": {"aiochris.models.logged_in.File.parent": {"tf": 1}}, "df": 1}}}, "u": {"docs": {}, "df": 0, "l": {"docs": {}, "df": 0, "d": {"docs": {"aiochris.client.authed.AuthenticatedClient.from_chrs": {"tf": 1}}, "df": 1}}}}, "a": {"docs": {}, "df": 0, "y": {"docs": {"aiochris": {"tf": 1}}, "df": 1}, "l": {"docs": {}, "df": 0, "k": {"docs": {}, "df": 0, "t": {"docs": {}, "df": 0, "h": {"docs": {}, "df": 0, "r": {"docs": {}, "df": 0, "o": {"docs": {}, "df": 0, "u": {"docs": {}, "df": 0, "g": {"docs": {}, "df": 0, "h": {"docs": {"aiochris": {"tf": 1}}, "df": 1}}}}}}}}}, "n": {"docs": {}, "df": 0, "t": {"docs": {"aiochris.client.authed.AuthenticatedClient.from_chrs": {"tf": 1}}, "df": 1}}, "s": {"docs": {"aiochris.models.logged_in.PACSFile": {"tf": 1}}, "df": 1}, "i": {"docs": {}, "df": 0, "t": {"docs": {"aiochris.models.logged_in.PluginInstance.wait": {"tf": 2}}, "df": 1}}}, "e": {"docs": {"aiochris": {"tf": 1}}, "df": 1, "l": {"docs": {}, "df": 0, "l": {"docs": {"aiochris.client.base.BaseChrisClient.new": {"tf": 1}}, "df": 1}}}, "r": {"docs": {}, "df": 0, "i": {"docs": {}, "df": 0, "t": {"docs": {}, "df": 0, "e": {"docs": {"aiochris.client.authed.AuthenticatedClient.from_chrs": {"tf": 1}, "aiochris.models.logged_in": {"tf": 1}}, "df": 2}}}}}, "j": {"docs": {}, "df": 0, "u": {"docs": {}, "df": 0, "p": {"docs": {}, "df": 0, "y": {"docs": {}, "df": 0, "t": {"docs": {}, "df": 0, "e": {"docs": {}, "df": 0, "r": {"docs": {"aiochris": {"tf": 1.4142135623730951}, "aiochris.client.authed.AuthenticatedClient.from_chrs": {"tf": 1.4142135623730951}}, "df": 2}}}}}, "s": {"docs": {}, "df": 0, "t": {"docs": {"aiochris.ChrisAdminClient.add_plugin": {"tf": 1}, "aiochris.client.admin.ChrisAdminClient.add_plugin": {"tf": 1}}, "df": 2}}}, "s": {"docs": {}, "df": 0, "o": {"docs": {}, "df": 0, "n": {"docs": {"aiochris.ChrisAdminClient.add_plugin": {"tf": 1.4142135623730951}, "aiochris.client.admin.ChrisAdminClient.add_plugin": {"tf": 1.4142135623730951}}, "df": 2}}}, "o": {"docs": {}, "df": 0, "b": {"docs": {"aiochris.models.data.PluginInstanceData": {"tf": 1}}, "df": 1, "s": {"docs": {"aiochris.client.authed.AuthenticatedClient.upload_file": {"tf": 1.4142135623730951}}, "df": 1}}}}, "k": {"docs": {}, "df": 0, "e": {"docs": {}, "df": 0, "e": {"docs": {}, "df": 0, "p": {"docs": {"aiochris": {"tf": 1}}, "df": 1}}, "y": {"docs": {}, "df": 0, "r": {"docs": {}, "df": 0, "i": {"docs": {}, "df": 0, "n": {"docs": {}, "df": 0, "g": {"docs": {"aiochris.client.from_chrs.ChrsLogin.to_keyring_username": {"tf": 1}, "aiochris.client.from_chrs.ChrsKeyringError": {"tf": 1}}, "df": 2}}}}}}}, "y": {"docs": {}, "df": 0, "o": {"docs": {}, "df": 0, "u": {"docs": {"aiochris": {"tf": 1.7320508075688772}, "aiochris.AnonChrisClient.search_plugins": {"tf": 1}, "aiochris.ChrisAdminClient.add_plugin": {"tf": 1}, "aiochris.acollect": {"tf": 1}, "aiochris.client.admin.ChrisAdminClient.add_plugin": {"tf": 1}, "aiochris.client.anon.AnonChrisClient.search_plugins": {"tf": 1}, "aiochris.client.authed.AuthenticatedClient.from_chrs": {"tf": 1.4142135623730951}, "aiochris.client.base.BaseChrisClient.new": {"tf": 1}, "aiochris.models.logged_in.PluginInstance.wait": {"tf": 1}, "aiochris.util.search.acollect": {"tf": 1}}, "df": 10, "r": {"docs": {"aiochris": {"tf": 1}, "aiochris.client.authed.AuthenticatedClient.from_chrs": {"tf": 1}}, "df": 2}}}}, "x": {"docs": {"aiochris.models.logged_in.Plugin.create_instance": {"tf": 2.23606797749979}}, "df": 1}}}}, "pipeline": ["trimmer"], "_isPrebuiltIndex": true}; // mirrored in build-search-index.js (part 1) // Also split on html tags. this is a cheap heuristic, but good enough.