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Welcome to the gig-map wiki!

You may have reached this page because you are interested in understanding what genes are shared across a collection of microbial genomes. This wiki is intended to provide some useful guidance for running the code contained in this software repository. It assumes a basic familiarity with the command line and UNIX shell.

Sections:

• Scientific Background
• Getting Started
• Downloading Genomes
• Deduplicating Genes
• Aligning Genes to Genomes
• Rendering Displays