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Version parsers #16

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cmdcolin opened this issue Apr 23, 2019 · 3 comments
Open

Version parsers #16

cmdcolin opened this issue Apr 23, 2019 · 3 comments

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@cmdcolin
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cmdcolin commented Apr 23, 2019

The majority of bigwig/bigbed file format spec include the supplementary info which is https://www.ncbi.nlm.nih.gov/pubmed/20639541 and existing parser implementations

The supplementary info doc describes version 3 of the file format

The stats field only exists in 3 and not 2, but I have not seen any version 2 files that have caused this issue

The current bigwig version that seems widespread is now version 4, and I am not sure what changes were made in this version

@rbuels
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rbuels commented Apr 24, 2019

Hate to say it, but the best source for current info is probably going to be reading the source code. See https://github.com/ucscGenomeBrowser/kent/blob/master/src/lib/bbiRead.c#L80

@rbuels
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rbuels commented Apr 24, 2019

Here's a comment with a concise version history:

https://github.com/ucscGenomeBrowser/kent/blob/master/src/inc/bbiFile.h#L75

@rbuels
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rbuels commented Apr 24, 2019

Here's the bigwig creation main func: https://github.com/ucscGenomeBrowser/kent/blob/master/src/lib/bwgCreate.c#L980

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