From 0866c5697a98b656ccfc3f12128b2d3ef3eac3fb Mon Sep 17 00:00:00 2001 From: Colin Date: Mon, 11 Dec 2023 13:24:46 -0500 Subject: [PATCH] Update README.md --- README.md | 12 +++++------- browser.ipynb => examples/basic_usage.ipynb | 0 browser.py => examples/non_notebook_usage.ipynb | 0 skbr3.ipynb => examples/skbr3.ipynb | 0 4 files changed, 5 insertions(+), 7 deletions(-) rename browser.ipynb => examples/basic_usage.ipynb (100%) rename browser.py => examples/non_notebook_usage.ipynb (100%) rename skbr3.ipynb => examples/skbr3.ipynb (100%) diff --git a/README.md b/README.md index f4d6ba7..9779361 100644 --- a/README.md +++ b/README.md @@ -8,9 +8,9 @@ Jupyter notebooks ## Demos - Basic usage - - [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/GMOD/jbrowse-jupyter/blob/main/browser.ipynb) + [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/GMOD/jbrowse-jupyter/blob/main/examples/basic_usage.ipynb) - SKBR3 cancer cell line demo - - [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/GMOD/jbrowse-jupyter/blob/main/skbr3.ipynb) + [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/GMOD/jbrowse-jupyter/blob/main/examples/skbr3.ipynb) ## Tutorials @@ -65,12 +65,10 @@ We currently support: - bam/cram - bigwig - bigbed -- indexed fasta -- bgzip indexed fasta -- gff3 tabix +- indexed fasta/bgzip indexed fasta - twobit -- vcf -- vcf tabix +- gff3 tabix +- vcf/vcf tabix ### How do I configure text searching? diff --git a/browser.ipynb b/examples/basic_usage.ipynb similarity index 100% rename from browser.ipynb rename to examples/basic_usage.ipynb diff --git a/browser.py b/examples/non_notebook_usage.ipynb similarity index 100% rename from browser.py rename to examples/non_notebook_usage.ipynb diff --git a/skbr3.ipynb b/examples/skbr3.ipynb similarity index 100% rename from skbr3.ipynb rename to examples/skbr3.ipynb