From b444b18bf3bb7235b25a621dcbf9a1bedb70a669 Mon Sep 17 00:00:00 2001
From: Caroline Bridge <cbridge@oicr.on.ca>
Date: Wed, 3 Jan 2024 11:26:23 -0500
Subject: [PATCH] adds auto pub action to be triggered by auto deploy

---
 .github/bump.yml               | 38 ++++++++++++++++++++++++++++++++++
 .github/workflows/auto_pub.yml | 30 +++++++++++++++++++++++++++
 .gitignore                     |  2 +-
 jbrowse_jupyter/tracks.py      |  1 -
 4 files changed, 69 insertions(+), 2 deletions(-)
 create mode 100644 .github/bump.yml
 create mode 100644 .github/workflows/auto_pub.yml

diff --git a/.github/bump.yml b/.github/bump.yml
new file mode 100644
index 0000000..db1bfb4
--- /dev/null
+++ b/.github/bump.yml
@@ -0,0 +1,38 @@
+release:
+  title-prefix: 'v'
+  title-postfix: ''
+  body-title: ''
+  body-when-empty-changes: 'No changes'
+  initial-version: '1.5.9'
+  tag-prefix: 'v'
+  tag-postfix: ''
+branch:
+  base-branch: 'main'
+  version-branch-prefix: 'v'
+  version-branch-postfix: ''
+  create-major-version-branch: false
+  create-minor-version-branch: true
+  bump-version-commit-prefix: 'v'
+  bump-version-commit-postfix: ''
+categories:
+  - title: ''
+    commits:
+      - 'Upgrading JBrowse version'
+    changes-prefix: 'Automatic JBrowse dependency upgrade: '
+bump:
+  default: 'minor'
+  major:
+    labels:
+      - 'major'
+    commits:
+      - 'major:'
+  minor:
+    labels:
+      - 'minor'
+    commits:
+      - 'minor: JBrowse version bump'
+  patch:
+    labels:
+      - 'patch'
+    commits:
+      - 'patch:'
\ No newline at end of file
diff --git a/.github/workflows/auto_pub.yml b/.github/workflows/auto_pub.yml
new file mode 100644
index 0000000..d9b9460
--- /dev/null
+++ b/.github/workflows/auto_pub.yml
@@ -0,0 +1,30 @@
+name: Receive dispatch (publish)
+
+on:
+  repository_dispatch:
+    types:
+      - auto_publish
+
+jobs:
+  upgrade: # upgrades package files with new JBrowse version
+    runs-on: ubuntu-latest
+    steps:
+      - name: Upgrade dash_jbrowse version
+        uses: actions/checkout@v4
+      - run: |
+          sed -i 's|.*dash-jbrowse.*|    "dash-jbrowse>=${{github.event.client_payload.version}}",|' requirements.txt
+      - name: Commit and push changes
+        run : |
+          git config --global user.name "cmdcolin"
+          git config --global user.email "colin.diesh@gmail.com"
+          git add -A
+          git commit -m "Upgrading dash_jbrowse version"
+          git push
+      - name: Bump version
+        uses: MeilCli/bump-release-action@v1
+        with:
+          config_path: '.github/bump.yml'
+          bump: 'patch'
+  release:
+    needs: upgrade
+    uses: ./.github/workflows/release.yml
\ No newline at end of file
diff --git a/.gitignore b/.gitignore
index eef2b81..10861df 100644
--- a/.gitignore
+++ b/.gitignore
@@ -128,7 +128,7 @@ dmypy.json
 # Pyre type checker
 .pyre/
 
-
+.DS_Store
 .vscode
 
 GRCh37_latest_genomic.sort.gff.gz
diff --git a/jbrowse_jupyter/tracks.py b/jbrowse_jupyter/tracks.py
index a5a627d..4c574f4 100644
--- a/jbrowse_jupyter/tracks.py
+++ b/jbrowse_jupyter/tracks.py
@@ -529,7 +529,6 @@ def get_track_data(df):
     df["additional"] = ""
     if "score" in df:
         required.append("score")
-        # if df.dtypes["score"] != int:
         if isinstance(df.dtypes["score"], numbers.Number):
             raise TypeError("Score column must be a number.")
     filtered = df[required]