_config.yml

#------------------------------------------------------------
# Values for this lesson.
#------------------------------------------------------------

# Overall title for pages.
title: "Introduction to gene expression microarray analysis in R and Bioconductor"

# Life cycle stage of the lesson
# possible values: "pre-alpha", "alpha", "beta", "stable"
life_cycle: "stable"

#------------------------------------------------------------
# Generic settings (should not need to change).
#------------------------------------------------------------

# What kind of thing is this ("workshop" or "lesson")?
kind: "lesson"

# Magic to make URLs resolve both locally and on GitHub.
# See https://help.github.com/articles/repository-metadata-on-github-pages/.
# Please don't change it: <USERNAME>/<PROJECT> is correct.
repository: <USERNAME>/<PROJECT>
workshop_repo: site.repository

# Email address, no mailto:
email: "dbsgtk@nus.edu.sg"

cc_by_human: "https://creativecommons.org/licenses/by/4.0/"


# Start time in minutes (0 to be clock-independent, 540 to show a start at 09:00 am).
start_time: 840

plugins:
  - jekyll-remote-theme

remote_theme: GTK-teaching/lesson-theme

# Specify that things in the episodes collection should be output.
collections:
  episodes:
    output: true
    permalink: /:path/index.html
  extras:
    output: true
    permalink: /:path/index.html

# Set the default layout for things in the episodes collection.
defaults:
  - values:
      root: .
      layout: page
  - scope:
      path: ""
      type: episodes
    values:
      root: ..
      layout: episode
  - scope:
      path: ""
      type: extras
    values:
      root: ..
      layout: page

# Files and directories that are not to be copied.
exclude:
  - Makefile
  - bin/
  - .Rproj.user/
  - vendor

# Turn on built-in syntax highlighting.
highlighter: rouge