Issue394 #397
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Issue394 #397
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If the node is named with only digit symbols, it can be the reason of the error: terminate called after throwing an instance of 'std::out_of_range' what(): vector::_M_range_check: __n (which is 12157) >= this->size() (which is 3) Aborted (core dumped) A function added to phylotree.cc shows a possible explanation
Added an std::out_of_range exception
MarioStanke
requested changes
Jul 21, 2023
| int error_message = parser.parse(); | ||
| if(error_message == 1){ | ||
| throw ProjectError("the parsing of " + filename + " has been unsuccessful. Please check, whether the syntax of your input file is correct" ); | ||
| } |
| std::cout << "An out_of_range exception occurred: " << e.what() << std::endl; | ||
| throw ProjectError("the parsing of " + filename + " has been unsuccessful. Probably, at least one node named with only digits. Please check, whether the syntax of your input file is correct" ); | ||
| } | ||
| fb.close(); |
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indentation inconsistent with previous line
src/phylotree.cc
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| #include <iostream> | ||
| #include <stdio.h> | ||
| #include <stack> | ||
| #include <string> | ||
| #include <regex> | ||
| #include <stdexcept> |
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Please remove duplicates and unnecessary includes. Is regex used at all?
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Added catching an exception for the error "An out_of_range exception occurred: vector::_M_range_check: __n (which is 12157) >= this->size() (which is 3)" possibly caused by an error in .nwk file