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Assay used in FindAllMarkers #7

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Jayjay601 opened this issue Aug 11, 2020 · 1 comment
Open

Assay used in FindAllMarkers #7

Jayjay601 opened this issue Aug 11, 2020 · 1 comment

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@Jayjay601
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Hi,
If the default assay is either integrated or SCT, should assay="RNA" be set in the "FindAllMarkers" function here so that it is not applied to the SCT or integrated assay?

Thank you,
J
@Linpu2023
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Dear @Jayjay601, dear @GenomicsNX,

Have you solved this problem? I want to apply IKAP on SCTransformed data, what modifications should I make?

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@Jayjay601 @Linpu2023