diff --git a/docs/environment.yaml b/docs/environment.yaml index 52efe3f..eb9af25 100644 --- a/docs/environment.yaml +++ b/docs/environment.yaml @@ -6,11 +6,9 @@ dependencies: - python - myst-parser - sphinx - - pandas - sphinx_rtd_theme + - pandas - anndata - - scanpy - pip - pip: - - nbsphinx - pydeseq2 diff --git a/docs/source/conf.py b/docs/source/conf.py index 55c8a6d..3dabfc8 100755 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -8,7 +8,7 @@ # -- General configuration --------------------------------------------- # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones. -extensions = ['myst_parser', 'sphinx.ext.autodoc', 'sphinx.ext.viewcode'] +extensions = ['sphinx.ext.autodoc', 'sphinx.ext.viewcode', 'myst_parser'] # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] @@ -16,11 +16,7 @@ # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # -source_suffix = { - '.rst': 'restructuredtext', - '.txt': 'markdown', - '.md': 'markdown', -} +source_suffix = ['.rst', '.md'] # source_suffix = '.md' # The master toctree document. @@ -62,6 +58,7 @@ # -- Options for HTML output ------------------------------------------- # Activate the theme. html_theme = 'sphinx_rtd_theme' +# html_theme = "furo" # Theme options are theme-specific and customize the look and feel of a # theme further. For a list of options available for each theme, see the