From f8d44802193f2ad9a73a49a9c61e09e9d98a0a1a Mon Sep 17 00:00:00 2001 From: "Abolfazl (Abe)" Date: Fri, 8 Dec 2023 15:47:21 -0800 Subject: [PATCH] add a figure for common types of screens --- README.md | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index bdcfec8..e195c34 100644 --- a/README.md +++ b/README.md @@ -13,8 +13,11 @@ Genomics evolves and newer CRISPR screen platforms are developed. For more information about the statistical methods used in ScreenPro2, please refer to the detailed documentation about [PhenoScore](https://screenpro2.readthedocs.io/en/latest/PhenoScore.html) module. -Note that ScreenPro2 starts with a counts matrix of oligo counts (samples x oligos) so you will need to process your -raw sequencing data into a counts matrix before using ScreenPro2. +> From: [A new era in functional genomics screens](https://www.nature.com/articles/s41576-021-00409-w) + +> Fig. 1: Common types of CRISPR screening modalities indicating advances in CRISPR methods. + +> image ## Installation ScreenPro2 is available on PyPI and can be installed with pip: @@ -28,6 +31,8 @@ pip install git+https://github.com/abearab/ScreenPro2.git ``` ## Usage +Note that ScreenPro2 starts with a counts matrix of oligo counts (samples x oligos) so you will need to process your +raw sequencing data into a counts matrix before using ScreenPro2. ### Load Data First, load your data into an `AnnData` object (see [anndata](https://anndata.readthedocs.io/en/latest/index.html) for