-
Notifications
You must be signed in to change notification settings - Fork 13
361 lines (306 loc) · 10.5 KB
/
linux.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
name: linux
on:
pull_request:
branches: [ develop ]
push:
branches: [ develop ]
paths-ignore:
- '**.md'
- '**.txt'
- 'docs/**'
# Allows to run this workflow manually from the Actions tab
workflow_dispatch:
jobs:
vol-async-hdf5-1_14_3-Makefile:
runs-on: ubuntu-latest
timeout-minutes: 60
steps:
- name: Checkout submodule Argobots
uses: actions/checkout@v3
with:
submodules: 'true'
- name: Checkout HDF5 1.14.3
uses: actions/checkout@v3
with:
repository: HDFGroup/hdf5
ref: hdf5-1_14_3
path: hdf5
- name: Dependencies
run: |
sudo apt-get update
sudo apt-get install libtool libopenmpi-dev zlib1g-dev python3
- name: Installation
run: |
mydir="$PWD"
export HDF5_DIR=$mydir/hdf5/install
export ABT_DIR=$mydir/argobots
export VOL_DIR=$mydir
mkdir $HDF5_DIR
# Compile HDF5
cd hdf5
export HDF5_LIBTOOL=/usr/bin/libtoolize
./autogen.sh
./configure --prefix=$HDF5_DIR --enable-parallel --enable-threadsafe --enable-unsupported \
--disable-tests --disable-hl --disable-fortran --disable-tools --disable-hltools
make && make install
# Compile Argobots
cd $ABT_DIR
./autogen.sh
./configure --prefix=$ABT_DIR
make && make install
# Compile Asynchronous VOL connector
cd $VOL_DIR/src
tail -n 48 Makefile.summit > Makefile
make
- name: Compile and Test Vol-Async
run: |
# Compile vol-async tests
mydir="$PWD"
cd $mydir
cd test
# Set Environmental Variables
export H5_DIR=$mydir/hdf5
export VOL_DIR=$mydir/
export ABT_DIR=$mydir/argobots
export ASYNC_DIR=$mydir/src
export HDF5_DIR=$mydir/hdf5/install
export LD_LIBRARY_PATH=$VOL_DIR/src:$H5_DIR/install/lib:$ABT_DIR/lib:$LD_LIBRARY_PATH
export HDF5_PLUGIN_PATH="$VOL_DIR/src"
export HDF5_VOL_CONNECTOR="async under_vol=0;under_info={}"
# Makefile
tail -n 47 Makefile.summit > Makefile
export LD_PRELOAD=$mydir/argobots/lib/libabt.so
make
date
# Run serial and parallel tests
make check
date
# Test with async VOL double buffering
cd ../src
sed -i "s/CFLAGS =/CFLAGS = -DENABLE_WRITE_MEMCPY=1 /g" ./Makefile
cat Makefile
make clean
make
cd ../test
date
make clean
make
make check
date
vol-async-hdf5-develop-Makefile:
runs-on: ubuntu-latest
timeout-minutes: 30
steps:
- name: Checkout submodule Argobots
uses: actions/checkout@v3
with:
submodules: 'true'
- name: Checkout HDF5 latest
uses: actions/checkout@v3
with:
repository: HDFGroup/hdf5
path: hdf5
- name: Dependencies
run: |
sudo apt-get update
sudo apt-get install libtool libopenmpi-dev zlib1g-dev python3
- name: Installation
run: |
mydir="$PWD"
export HDF5_DIR=$mydir/hdf5/install
export ABT_DIR=$mydir/argobots
export VOL_DIR=$mydir
mkdir $HDF5_DIR
# Compile HDF5
cd hdf5
export HDF5_LIBTOOL=/usr/bin/libtoolize
./autogen.sh
./configure --prefix=$HDF5_DIR --enable-parallel --enable-threadsafe --enable-unsupported \
--disable-tests --disable-hl --disable-fortran --disable-tools --disable-hltools
make && make install
# Compile Argobots
cd $ABT_DIR
./autogen.sh
./configure --prefix=$ABT_DIR
make && make install
# Compile Asynchronous VOL connector
cd $VOL_DIR/src
tail -n 48 Makefile.summit > Makefile
make
- name: Compile and Test Vol-Async
run: |
# Compile vol-async tests
mydir="$PWD"
cd $mydir
cd test
# Set Environmental Variables
export H5_DIR=$mydir/hdf5
export VOL_DIR=$mydir/
export ABT_DIR=$mydir/argobots
export ASYNC_DIR=$mydir/src
export HDF5_DIR=$mydir/hdf5/install
export LD_LIBRARY_PATH=$VOL_DIR/src:$H5_DIR/install/lib:$ABT_DIR/lib:$LD_LIBRARY_PATH
export HDF5_PLUGIN_PATH="$VOL_DIR/src"
export HDF5_VOL_CONNECTOR="async under_vol=0;under_info={}"
# Makefile
tail -n 47 Makefile.summit > Makefile
export LD_PRELOAD=$mydir/argobots/lib/libabt.so
make
date
# Run serial and parallel tests
make check
date
# Test with async VOL double buffering
cd ../src
sed -i "s/CFLAGS =/CFLAGS = -DENABLE_WRITE_MEMCPY=1 /g" ./Makefile
cat Makefile
make clean
make
cd ../test
date
make clean
make
make check
date
vol-async-hdf5-1_14_3-cmake:
runs-on: ubuntu-latest
timeout-minutes: 30
steps:
- name: Checkout submodule Argobots
uses: actions/checkout@v3
with:
submodules: 'true'
- name: Checkout HDF5 1.14.3
uses: actions/checkout@v3
with:
repository: HDFGroup/hdf5
ref: hdf5-1_14_3
path: hdf5
- name: Dependencies
run: |
sudo apt-get update
sudo apt-get install libtool libopenmpi-dev zlib1g-dev python3 cmake
- name: Installation
run: |
mydir="$PWD"
export HDF5_DIR=$mydir/hdf5/install
export ABT_DIR=$mydir/argobots
export VOL_DIR=$mydir/vol-async/install
mkdir $HDF5_DIR
# Compile HDF5
cd hdf5
mkdir build
cd build
cmake -DCMAKE_INSTALL_PREFIX=$HDF5_DIR -DHDF5_ENABLE_PARALLEL=ON -DHDF5_ENABLE_THREADSAFE=ON \
-DALLOW_UNSUPPORTED=ON -DBUILD_TESTING=OFF -DHDF5_BUILD_HL_LIB=OFF -DHDF5_BUILD_HL_TOOLS=OFF \
-DHDF5_BUILD_EXAMPLES=OFF -DHDF5_BUILD_FORTRAN=OFF -DCMAKE_C_COMPILER=mpicc ..
make -j && make install
# Compile Argobots
cd $ABT_DIR
./autogen.sh
./configure --prefix=$ABT_DIR
make && make install
# Compile Asynchronous VOL connector
pwd
cd ../
mkdir build
cd build
cmake -DCMAKE_INSTALL_PREFIX=$VOL_DIR -DCMAKE_C_COMPILER=mpicc ..
make && make install
- name: Compile and Test Vol-Async
run: |
# Compile vol-async tests
mydir="$PWD"
echo $PWD
cd build
# Set Environmental Variables
export VOL_DIR=$mydir/vol-async/install
export ABT_DIR=$mydir/argobots
export HDF5_DIR=$mydir/hdf5/install
export LD_LIBRARY_PATH=$VOL_DIR/lib:$HDF5_DIR/install/lib:$ABT_DIR/lib:$LD_LIBRARY_PATH
export HDF5_PLUGIN_PATH="$VOL_DIR/lib"
export HDF5_VOL_CONNECTOR="async under_vol=0;under_info={}"
export LD_PRELOAD=$mydir/argobots/lib/libabt.so
# Run serial and parallel tests
date
ctest -V
date
# Test with async VOL write memcopy (double buffering)
cmake -DCMAKE_INSTALL_PREFIX=$VOL_DIR -DCMAKE_C_COMPILER=mpicc -DENABLE_WRITE_MEMCPY=ON ..
make clean
make && make install
date
ctest -V
date
vol-async-hdf5-develop-cmake:
runs-on: ubuntu-latest
timeout-minutes: 30
steps:
- name: Checkout submodule Argobots
uses: actions/checkout@v3
with:
submodules: 'true'
- name: Checkout HDF5 latest
uses: actions/checkout@v3
with:
repository: HDFGroup/hdf5
path: hdf5
- name: Dependencies
run: |
sudo apt-get update
sudo apt-get install libtool libopenmpi-dev zlib1g-dev python3 cmake
- name: Installation
run: |
mydir="$PWD"
export HDF5_DIR=$mydir/hdf5/install
export ABT_DIR=$mydir/argobots
export VOL_DIR=$mydir/vol-async/install
mkdir $HDF5_DIR
# Compile HDF5
cd hdf5
mkdir build
cd build
cmake -DCMAKE_INSTALL_PREFIX=$HDF5_DIR -DHDF5_ENABLE_PARALLEL=ON -DHDF5_ENABLE_THREADSAFE=ON \
-DALLOW_UNSUPPORTED=ON -DBUILD_TESTING=OFF -DHDF5_BUILD_HL_LIB=OFF -DHDF5_BUILD_HL_TOOLS=OFF \
-DHDF5_BUILD_EXAMPLES=OFF -DHDF5_BUILD_FORTRAN=OFF -DCMAKE_C_COMPILER=mpicc ..
make -j && make install
# Compile Argobots
cd $ABT_DIR
./autogen.sh
./configure --prefix=$ABT_DIR
make && make install
# Compile Asynchronous VOL connector
pwd
cd ../
mkdir build
cd build
cmake -DCMAKE_INSTALL_PREFIX=$VOL_DIR -DCMAKE_C_COMPILER=mpicc ..
make && make install
- name: Compile and Test Vol-Async
run: |
# Compile vol-async tests
mydir="$PWD"
echo $PWD
cd build
# Set Environmental Variables
export VOL_DIR=$mydir/vol-async/install
export ABT_DIR=$mydir/argobots
export HDF5_DIR=$mydir/hdf5/install
export LD_LIBRARY_PATH=$VOL_DIR/lib:$HDF5_DIR/install/lib:$ABT_DIR/lib:$LD_LIBRARY_PATH
export HDF5_PLUGIN_PATH="$VOL_DIR/lib"
export HDF5_VOL_CONNECTOR="async under_vol=0;under_info={}"
export LD_PRELOAD=$mydir/argobots/lib/libabt.so
# Run serial and parallel tests
date
ctest -V
date
# Test with async VOL write memcopy (double buffering)
cmake -DCMAKE_INSTALL_PREFIX=$VOL_DIR -DCMAKE_C_COMPILER=mpicc -DENABLE_WRITE_MEMCPY=ON ..
make clean
make && make install
date
ctest -V
date
- name: Setup tmate session
if: ${{ failure() }}
uses: mxschmitt/action-tmate@v3