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Gemfile.lock
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GIT
remote: https://github.com/HITS-SDBV/rcdk.git
revision: 4b4091a9f063e9a1481f86415d9a521040d3b818
tag: v0.4.1
specs:
rcdk (0.4.1)
lock_jar (~> 0.15.0)
rjb (~> 1.5)
GIT
remote: https://github.com/SysMO-DB/acts_as_activity_logged.git
revision: da0b6d8e4ccabfa231c39aa89522c8ba73f03c0e
specs:
acts_as_activity_logged (0.3.3)
GIT
remote: https://github.com/SysMO-DB/acts_as_trashable.git
revision: ff5dcddece0d03014a8ffde526da59a151501cd7
specs:
acts_as_trashable (1.0.6)
activerecord (>= 2.2)
GIT
remote: https://github.com/SysMO-DB/app_version.git
revision: 773b6ae72d9cba038fce1a3502feb5de2f2b75a3
specs:
app_version (1.0.0)
GIT
remote: https://github.com/SysMO-DB/convert_office.git
revision: 753f2567dbd625bc89071e1150404efbb562e130
ref: 753f2567dbd625bc89071e1150404efbb562e130
specs:
convert_office (0.9.1)
GIT
remote: https://github.com/SysMO-DB/doi_query_tool.git
revision: d87ae6ffa2393beba4bbb49817cf04a60f520fee
specs:
doi_query_tool (0.0.0)
GIT
remote: https://github.com/SysMO-DB/fleximage
revision: 658985eb1460fb5d6612f624463e6cbf067ad973
specs:
fleximage (0.1)
GIT
remote: https://github.com/SysMO-DB/gibberish.git
revision: d24c42b9608f39f82e37e757f530d8199049c557
specs:
gibberish (1.0.0)
GIT
remote: https://github.com/SysMO-DB/my_rails_settings.git
revision: e3f7fe9625ea27fea42b02c95e30cb4f1341655b
specs:
my_rails_settings (1.0.0)
GIT
remote: https://github.com/SysMO-DB/my_responds_to_parent.git
revision: 5fadfd0cd85a0a70caaddd36f9617cb743047e0b
specs:
my_responds_to_parent (1.0.0)
GIT
remote: https://github.com/SysMO-DB/my_savage_beast
revision: 4ff41d5e7d1f17440240fe0886a7c9827f8f53c6
specs:
my_savage_beast (2.3)
GIT
remote: https://github.com/SysMO-DB/open_id_authentication.git
revision: 5f6c85f1478545856aa36d1cc234255b9abc0c13
specs:
open_id_authentication (1.1.0)
rack-openid (~> 1.3)
GIT
remote: https://github.com/SysMO-DB/piwik-ruby-tracking.git
revision: 06fa67ba4b2bd66878d745e9de5d6d6c8015bc92
specs:
piwik_analytics (1.0.1)
actionpack
activesupport
rails (>= 3.0.0)
GIT
remote: https://github.com/SysMO-DB/redbox
revision: 494451d01aeeb70b186783d08b6b9aefcb537e98
specs:
redbox (1.0.4)
GIT
remote: https://github.com/SysMO-DB/site_announcements.git
revision: 91ceecf26ab29a74e32e239827fd5fef8519df0f
specs:
site_announcements (1.1)
GIT
remote: https://github.com/SysMO-DB/white_list.git
revision: 3f9798ec54f227e852b944bb14f6f90d05cde893
specs:
white_list (1.0.0)
GIT
remote: https://github.com/SysMO-DB/white_list_formatted_content.git
revision: c02bea47e477c1ac59e45a2a8a51aaa2c8e6b72f
specs:
white_list_formatted_content (1.0.0)
GIT
remote: https://github.com/myGrid/annotations.git
revision: d33e78993ee957fa12d71cbe9f03100dd9b0ad15
specs:
my_annotations (0.6.0)
GIT
remote: https://github.com/myGrid/search_biomodel.git
revision: e109ac6d8b102f7ecb65140c17d263b85e066870
specs:
search_biomodel (2.2.1)
GIT
remote: https://github.com/myGrid/taverna-player.git
revision: bf7512faafa819a8df6ae692f4ba8ce41a9fa3e4
branch: list-inputs
specs:
taverna-player (0.8.0)
coderay (~> 1.1)
daemons (~> 1.1.9)
delayed_job_active_record (~> 4.0)
jbuilder (~> 2.0)
jquery-rails (~> 3.0)
paperclip (~> 4.1)
pmrpc-rails (~> 1.0.0)
rails (~> 3.2.12)
rails_autolink (~> 1.1.0)
require_all (~> 1.3.1)
rubyzip (~> 1.1.4)
t2-server (~> 1.1)
GIT
remote: https://github.com/paneq/calendar_date_select.git
revision: 977048211b94599fe0f08eb37a481f3d69df48f6
specs:
calendar_date_select (1.16.2)
GEM
remote: https://rubygems.org/
remote: https://rails-assets.org/
specs:
RedCloth (4.2.9)
actionmailer (3.2.21)
actionpack (= 3.2.21)
mail (~> 2.5.4)
actionpack (3.2.21)
activemodel (= 3.2.21)
activesupport (= 3.2.21)
builder (~> 3.0.0)
erubis (~> 2.7.0)
journey (~> 1.0.4)
rack (~> 1.4.5)
rack-cache (~> 1.2)
rack-test (~> 0.6.1)
sprockets (~> 2.2.1)
activemodel (3.2.21)
activesupport (= 3.2.21)
builder (~> 3.0.0)
activerecord (3.2.21)
activemodel (= 3.2.21)
activesupport (= 3.2.21)
arel (~> 3.0.2)
tzinfo (~> 0.3.29)
activeresource (3.2.21)
activemodel (= 3.2.21)
activesupport (= 3.2.21)
activesupport (3.2.21)
i18n (~> 0.6, >= 0.6.4)
multi_json (~> 1.0)
acts-as-taggable-on (3.0.1)
rails (>= 3, < 5)
acts_as_list (0.4.0)
activerecord (>= 3.0)
acts_as_tree (2.1.0)
activerecord (>= 3.0.0)
addressable (2.3.6)
akami (1.2.2)
gyoku (>= 0.4.0)
nokogiri
ansi (1.4.3)
api_smith (1.3.0)
hashie (>= 1.0, < 3.0)
httparty
arel (3.0.3)
ast (2.0.0)
awesome_print (1.2.0)
axiom-types (0.1.1)
descendants_tracker (~> 0.0.4)
ice_nine (~> 0.11.0)
thread_safe (~> 0.3, >= 0.3.1)
bio (1.4.3.0001)
bioportal (2.2)
bives (0.10)
breadcrumbs_on_rails (2.3.0)
builder (3.0.4)
cancan (1.6.10)
celluloid (0.16.0)
timers (~> 4.0.0)
climate_control (0.0.3)
activesupport (>= 3.0)
cocaine (0.5.4)
climate_control (>= 0.0.3, < 1.0)
code_analyzer (0.4.5)
sexp_processor
coderay (1.1.0)
coercible (1.0.0)
descendants_tracker (~> 0.0.1)
colored (1.2)
colorize (0.7.3)
country-select (1.1.1)
coveralls (0.7.1)
multi_json (~> 1.3)
rest-client
simplecov (>= 0.7)
term-ansicolor
thor
crack (0.4.2)
safe_yaml (~> 1.0.0)
curb (0.8.6)
daemon_controller (1.2.0)
daemons (1.1.9)
datacite_doi_ify (1.0.0)
rest-client (~> 1.7)
delayed_job (4.0.4)
activesupport (>= 3.0, < 4.2)
delayed_job_active_record (4.0.2)
activerecord (>= 3.0, < 4.2)
delayed_job (>= 3.0, < 4.1)
descendants_tracker (0.0.4)
thread_safe (~> 0.3, >= 0.3.1)
diff-lcs (1.2.5)
docile (1.1.5)
docsplit (0.7.5)
domain_name (0.5.21)
unf (>= 0.0.5, < 1.0.0)
dynamic_form (1.1.4)
ebnf (0.3.6)
haml (~> 4.0)
rdf (~> 1.1)
sxp (~> 0.1, >= 0.1.3)
equalizer (0.0.9)
equivalent-xml (0.5.1)
nokogiri (>= 1.4.3)
erubis (2.7.0)
exception_notification (4.0.1)
actionmailer (>= 3.0.4)
activesupport (>= 3.0.4)
execjs (2.7.0)
factory_girl (2.6.4)
activesupport (>= 2.3.9)
faraday (0.9.0)
multipart-post (>= 1.2, < 3)
faraday-cookie_jar (0.0.6)
faraday (>= 0.7.4)
http-cookie (~> 1.0.0)
faraday_middleware (0.9.1)
faraday (>= 0.7.4, < 0.10)
feedjira (1.4.0)
curb (~> 0.8)
loofah (~> 2.0)
sax-machine (~> 1.0)
ffi (1.9.6)
flay (2.4.0)
ruby_parser (~> 3.0)
sexp_processor (~> 4.0)
flog (4.2.1)
ruby_parser (~> 3.1, > 3.1.0)
sexp_processor (~> 4.4)
formatador (0.2.5)
fssm (0.2.10)
google-analytics-rails (0.0.6)
guard (2.6.1)
formatador (>= 0.2.4)
listen (~> 2.7)
lumberjack (~> 1.0)
pry (>= 0.9.12)
thor (>= 0.18.1)
guard-rubycritic (1.0.0)
guard (~> 2.6)
rubycritic (~> 1.0)
gyoku (0.4.6)
builder (>= 2.1.2)
haml (4.0.5)
tilt
hashie (2.1.2)
hike (1.2.3)
hitimes (1.2.2)
hpricot (0.8.6)
htmlentities (4.3.2)
http-cookie (1.0.2)
domain_name (~> 0.5)
httparty (0.12.0)
json (~> 1.8)
multi_xml (>= 0.5.2)
httpclient (2.8.1)
httpi (1.1.1)
rack
i18n (0.7.0)
ice_nine (0.11.0)
in_place_editing (1.2.0)
jbuilder (2.2.4)
activesupport (>= 3.0.0, < 5)
multi_json (~> 1.2)
journey (1.0.4)
jquery-rails (3.1.3)
railties (>= 3.0, < 5.0)
thor (>= 0.14, < 2.0)
jquery-ui-rails (5.0.5)
railties (>= 3.2.16)
json (1.8.3)
json-ld (1.1.7)
rdf (~> 1.1, >= 1.1.4)
kgio (2.9.2)
libv8 (3.16.14.15)
libxml-ruby (2.6.0)
linkeddata (1.1.1)
equivalent-xml (>= 0.4.0)
json-ld (>= 1.1.1)
nokogiri (>= 1.6.1)
rdf (>= 1.1.1)
rdf-aggregate-repo (>= 1.1.0)
rdf-isomorphic (>= 1.1.0)
rdf-json (>= 1.1.0)
rdf-microdata (>= 1.1.1)
rdf-n3 (>= 1.1.0)
rdf-rdfa (>= 1.1.1)
rdf-rdfxml (>= 1.1.0)
rdf-trig (>= 1.1.2)
rdf-trix (>= 1.1.0)
rdf-turtle (>= 1.1.2)
sparql (>= 1.1.2)
sparql-client (>= 1.1.1)
listen (2.7.11)
celluloid (>= 0.15.2)
rb-fsevent (>= 0.9.3)
rb-inotify (>= 0.9)
lock_jar (0.15.2)
naether (~> 0.15.0)
thor (>= 0.18.1)
lograge (0.3.0)
actionpack (>= 3)
activesupport (>= 3)
railties (>= 3)
loofah (2.0.1)
nokogiri (>= 1.5.9)
lumberjack (1.0.9)
mail (2.5.4)
mime-types (~> 1.16)
treetop (~> 1.4.8)
mechanize (2.7.2)
domain_name (~> 0.5, >= 0.5.1)
http-cookie (~> 1.0.0)
mime-types (~> 1.17, >= 1.17.2)
net-http-digest_auth (~> 1.1, >= 1.1.1)
net-http-persistent (~> 2.5, >= 2.5.2)
nokogiri (~> 1.4)
ntlm-http (~> 0.1, >= 0.1.1)
webrobots (>= 0.0.9, < 0.2)
metainspector (3.3.0)
addressable (~> 2.3.5)
faraday (~> 0.9.0)
faraday-cookie_jar (~> 0.0.6)
faraday_middleware (~> 0.9.1)
nokogiri (~> 1.6)
method_source (0.8.2)
mime-types (1.25.1)
mimemagic (0.2.1)
mini_portile (0.6.0)
minitest (4.7.5)
minitest-reporters (0.14.24)
ansi
builder
minitest (>= 2.12, < 5.0)
powerbar
modporter-plugin (0.1.0)
multi_json (1.11.1)
multi_xml (0.5.5)
multipart-post (2.0.0)
mysql2 (0.3.16)
naether (0.15.0)
httpclient
rjb (> 1.4.0, < 1.6.0)
net-http-digest_auth (1.4)
net-http-persistent (2.9.4)
netrc (0.8.0)
nokogiri (1.6.3.1)
mini_portile (= 0.6.0)
nori (1.1.5)
ntlm-http (0.1.1)
open4 (1.3.0)
paperclip (4.2.0)
activemodel (>= 3.0.0)
activesupport (>= 3.0.0)
cocaine (~> 0.5.3)
mime-types
parser (2.1.9)
ast (>= 1.1, < 3.0)
slop (~> 3.4, >= 3.4.5)
passenger (4.0.53)
daemon_controller (>= 1.2.0)
rack
rake (>= 0.8.1)
pg (0.17.1)
pmrpc-rails (1.0.1)
railties (>= 3.1.0)
polyglot (0.3.5)
pothoven-attachment_fu (3.2.14)
powerbar (1.0.11)
ansi (~> 1.4.0)
hashie (>= 1.1.0)
powerpack (0.0.9)
pr_geohash (1.0.0)
prototype-rails (3.2.1)
rails (~> 3.2)
pry (0.10.1)
coderay (~> 1.1.0)
method_source (~> 0.8.1)
slop (~> 3.4)
pry-doc (0.6.0)
pry (~> 0.9)
yard (~> 0.8)
pry-remote (0.1.8)
pry (~> 0.9)
slop (~> 3.0)
psych (2.0.6)
rack (1.4.6)
rack-cache (1.2)
rack (>= 0.4)
rack-openid (1.4.2)
rack (>= 1.1.0)
ruby-openid (>= 2.1.8)
rack-ssl (1.3.4)
rack
rack-test (0.6.3)
rack (>= 1.0)
rails (3.2.21)
actionmailer (= 3.2.21)
actionpack (= 3.2.21)
activerecord (= 3.2.21)
activeresource (= 3.2.21)
activesupport (= 3.2.21)
bundler (~> 1.0)
railties (= 3.2.21)
rails-assets-blob-polyfill (1.0.20150320)
rails-assets-bxslider-4 (4.1.3)
rails-assets-jquery (>= 1.6)
rails-assets-d3 (3.5.5)
rails-assets-d3-tip (0.6.7)
rails-assets-d3 (= 3.5.5)
rails-assets-d3.svg.multibrush (0.9.1)
rails-assets-d3 (>= 3.5.5, < 4)
rails-assets-datatables.net (1.10.12)
rails-assets-jquery (>= 1.7)
rails-assets-datatables.net-buttons (1.2.4)
rails-assets-datatables.net (>= 1.10.9)
rails-assets-jquery (>= 1.7)
rails-assets-datatables.net-buttons-jqui (1.2.4)
rails-assets-datatables.net-buttons (>= 1.0.3)
rails-assets-datatables.net-jqui (>= 1.10.9)
rails-assets-jquery (>= 1.7)
rails-assets-datatables.net-fixedcolumns (3.2.2)
rails-assets-datatables.net (>= 1.10.9)
rails-assets-jquery (>= 1.7)
rails-assets-datatables.net-jqui (1.10.12)
rails-assets-datatables.net (>= 1.10.9)
rails-assets-jquery (>= 1.7)
rails-assets-datatables.net-responsive (2.1.0)
rails-assets-datatables.net (>= 1.10.9)
rails-assets-jquery (>= 1.7)
rails-assets-datatables.net-responsive-jqui (2.1.0)
rails-assets-datatables.net-jqui (>= 1.10.9)
rails-assets-datatables.net-responsive (>= 1.0.7)
rails-assets-jquery (>= 1.7)
rails-assets-filesaverjs (1.3.2)
rails-assets-jquery (3.1.0)
rails-assets-underscore (1.8.3)
rails_autolink (1.1.6)
rails (> 3.1)
rails_best_practices (1.15.4)
activesupport
awesome_print
code_analyzer (>= 0.4.3)
colored
erubis
i18n
json
require_all
ruby-progressbar
railties (3.2.21)
actionpack (= 3.2.21)
activesupport (= 3.2.21)
rack-ssl (~> 1.3.2)
rake (>= 0.8.7)
rdoc (~> 3.4)
thor (>= 0.14.6, < 2.0)
rainbow (2.0.0)
raindrops (0.13.0)
rake (10.4.2)
ratom (0.8.2)
libxml-ruby (~> 2.6.0)
rb-fsevent (0.9.4)
rb-inotify (0.9.5)
ffi (>= 0.5.0)
rdf (1.1.6)
rdf-aggregate-repo (1.1.0)
rdf (>= 1.1)
rdf-isomorphic (1.1.0)
rdf (>= 1.1)
rdf-json (1.1.0)
rdf (>= 1.1.0)
rdf-microdata (1.1.2)
htmlentities (~> 4.3)
nokogiri (~> 1.6)
rdf (~> 1.1)
rdf-xsd (~> 1.1)
rdf-n3 (1.1.2)
rdf (~> 1.1, >= 1.1.5)
rdf-rdfa (1.1.4.1)
haml (~> 4.0)
htmlentities (~> 4.3)
rdf (~> 1.1, >= 1.1.6)
rdf-xsd (~> 1.1)
rdf-rdfxml (1.1.3)
htmlentities (~> 4.3)
rdf (~> 1.1, >= 1.1.6)
rdf-rdfa (~> 1.1, >= 1.1.4.1)
rdf-xsd (~> 1.1)
rdf-trig (1.1.3.1)
ebnf (~> 0.3, >= 0.3.5)
rdf (~> 1.1, >= 1.1.2.1)
rdf-turtle (~> 1.1, >= 1.1.3)
rdf-trix (1.1.0)
rdf (>= 1.1)
rdf-turtle (1.1.4)
ebnf (~> 0.3, >= 0.3.6)
rdf (~> 1.1, >= 1.1.4)
rdf-virtuoso (0.1.6)
api_smith (~> 1.3.0)
httparty (~> 0.12.0)
rdf (~> 1.1.0)
rdf-xsd (1.1.2)
rdf (~> 1.1)
rdoc (3.12.2)
json (~> 1.4)
recaptcha (0.3.6)
reek (1.3.8)
rainbow (>= 1.99, < 3.0)
ruby2ruby (>= 2.0.8, < 3.0)
ruby_parser (~> 3.3)
sexp_processor
ref (2.0.0)
request-log-analyzer (1.13.1)
require_all (1.3.2)
rest-client (1.7.2)
mime-types (>= 1.16, < 3.0)
netrc (~> 0.7)
rfc-822 (0.4.0)
rjb (1.5.4)
rmagick (2.13.2)
rsolr (1.0.10)
builder (>= 2.1.2)
rspec-core (3.1.7)
rspec-support (~> 3.1.0)
rspec-expectations (3.1.2)
diff-lcs (>= 1.2.0, < 2.0)
rspec-support (~> 3.1.0)
rspec-mocks (3.1.3)
rspec-support (~> 3.1.0)
rspec-rails (3.1.0)
actionpack (>= 3.0)
activesupport (>= 3.0)
railties (>= 3.0)
rspec-core (~> 3.1.0)
rspec-expectations (~> 3.1.0)
rspec-mocks (~> 3.1.0)
rspec-support (~> 3.1.0)
rspec-support (3.1.2)
rubocop (0.23.0)
json (>= 1.7.7, < 2)
parser (~> 2.1.9)
powerpack (~> 0.0.6)
rainbow (>= 1.99.1, < 3.0)
ruby-progressbar (~> 1.4)
ruby-openid (2.5.0)
ruby-prof (0.15.2)
ruby-progressbar (1.6.0)
ruby2ruby (2.1.3)
ruby_parser (~> 3.1)
sexp_processor (~> 4.0)
ruby_parser (3.6.3)
sexp_processor (~> 4.1)
rubycritic (1.1.1)
flay (= 2.4.0)
flog (= 4.2.1)
parser (~> 2.1)
reek (= 1.3.8)
ruby2ruby (>= 2.1.1, < 3.0)
virtus (~> 1.0)
rubyzip (1.1.6)
safe_yaml (1.0.4)
sass (3.4.22)
sass-rails (3.2.6)
railties (~> 3.2.0)
sass (>= 3.1.10)
tilt (~> 1.3)
savon (1.1.0)
akami (~> 1.2.0)
builder (>= 2.1.2)
gyoku (~> 0.4.5)
httpi (~> 1.1.0)
nokogiri (>= 1.4.0)
nori (~> 1.1.0)
wasabi (~> 2.5.0)
sax-machine (1.0.2)
seedbank (0.3.0)
sexp_processor (4.4.4)
simple-spreadsheet-extractor (0.15.2)
libxml-ruby (~> 2.6)
open4 (= 1.3.0)
simplecov (0.9.1)
docile (~> 1.1.0)
multi_json (~> 1.0)
simplecov-html (~> 0.8.0)
simplecov-html (0.8.0)
slop (3.6.0)
sparql (1.1.4)
builder (~> 3.0)
ebnf (~> 0.3, >= 0.3.5)
rdf (~> 1.1, >= 1.1.4)
rdf-aggregate-repo (~> 1.1, >= 1.1.0)
rdf-xsd (~> 1.1)
sparql-client (~> 1.1)
sxp (~> 0.1)
sparql-client (1.1.3.1)
net-http-persistent (~> 2.9)
rdf (~> 1.1)
sprockets (2.2.3)
hike (~> 1.2)
multi_json (~> 1.0)
rack (~> 1.0)
tilt (~> 1.1, != 1.3.0)
sqlite3 (1.3.9)
sunspot (2.1.1)
pr_geohash (~> 1.0)
rsolr (~> 1.0.7)
sunspot_matchers (2.1.1.0)
sunspot_rails (2.1.1)
nokogiri
rails (>= 3)
sunspot (= 2.1.1)
sunspot_solr (2.1.1)
sxp (0.1.5)
t2-server (1.2.0)
libxml-ruby (~> 2.6)
net-http-persistent (~> 2.6)
ratom (~> 0.8.2)
taverna-baclava (~> 1.0)
taverna-baclava (1.0.1)
builder (~> 3.0)
taverna-t2flow (0.5.1)
libxml-ruby (>= 1.1.4)
term-ansicolor (1.3.0)
tins (~> 1.0)
test_after_commit (0.4.0)
activerecord (>= 3.2)
therubyracer (0.12.2)
libv8 (~> 3.16.14.0)
ref
thor (0.19.1)
thread_safe (0.3.4)
tilt (1.4.1)
timers (4.0.1)
hitimes
tins (1.3.3)
transaction_isolation (1.0.3)
activerecord (>= 3.0.11)
treetop (1.4.15)
polyglot
polyglot (>= 0.3.1)
turbo-sprockets-rails3 (0.3.14)
railties (> 3.2.8, < 4.0.0)
sprockets (>= 2.2.0)
tzinfo (0.3.51)
uglifier (3.0.0)
execjs (>= 0.3.0, < 3)
unf (0.1.4)
unf_ext
unf_ext (0.0.6)
unicorn (4.8.3)
kgio (~> 2.6)
rack
raindrops (~> 0.7)
unicorn-rails (2.2.0)
rack
unicorn
uuidtools (2.1.5)
virtus (1.0.3)
axiom-types (~> 0.1)
coercible (~> 1.0)
descendants_tracker (~> 0.0, >= 0.0.3)
equalizer (~> 0.0, >= 0.0.9)
wasabi (2.5.1)
httpi (~> 1.0)
nokogiri (>= 1.4.0)
webmock (1.20.0)
addressable (>= 2.3.6)
crack (>= 0.3.2)
webrobots (0.1.1)
will_paginate (3.0.7)
yaml_db (0.2.3)
yard (0.8.7.6)
PLATFORMS
ruby
DEPENDENCIES
RedCloth (= 4.2.9)
acts-as-taggable-on (= 3.0.1)
acts_as_activity_logged!
acts_as_list
acts_as_trashable!
acts_as_tree
app_version!
bio
bioportal (>= 2.2)
bives
breadcrumbs_on_rails
bundler (>= 1.8.4)
calendar_date_select!
cancan
cocaine
colorize
convert_office!
country-select
coveralls
daemons
datacite_doi_ify
delayed_job_active_record
docsplit
doi_query_tool!
dynamic_form
equivalent-xml
exception_notification
factory_girl (= 2.6.4)
feedjira (~> 1)
fleximage!
fssm
gibberish!
google-analytics-rails
guard-rubycritic
hpricot (~> 0.8.2)
in_place_editing
jquery-rails (~> 3)
jquery-ui-rails (~> 5)
libxml-ruby (>= 2.6.0)
linkeddata
lograge
mechanize
metainspector
mimemagic
minitest (~> 4.0)
minitest-reporters
modporter-plugin
my_annotations!
my_rails_settings!
my_responds_to_parent!
my_savage_beast!
mysql2
nokogiri
open_id_authentication!
passenger
pg
piwik_analytics!
pothoven-attachment_fu
prototype-rails
pry
pry-doc
pry-remote
psych
rack-openid
rails (= 3.2.21)
rails-assets-blob-polyfill (~> 1.0.20150320)!
rails-assets-bxslider-4 (~> 4.1.0)!
rails-assets-d3 (~> 3.5.5)!
rails-assets-d3-tip (~> 0.6.3)!
rails-assets-d3.svg.multibrush (~> 0.9.1)!
rails-assets-datatables.net-buttons-jqui (~> 1.2.4)!
rails-assets-datatables.net-fixedcolumns (~> 3.2.2)!
rails-assets-datatables.net-jqui (~> 1.10.0)!
rails-assets-datatables.net-responsive-jqui (~> 2.1.0)!
rails-assets-filesaverjs (~> 1.3.2)!
rails-assets-underscore (~> 1.8.3)!
rails_autolink
rails_best_practices
rcdk (= 0.4.1)!
rdf-virtuoso (>= 0.1.6)
rdoc
recaptcha
redbox!
request-log-analyzer
rest-client
rfc-822
rjb (~> 1.5.3)
rmagick (= 2.13.2)
rspec-rails
rubocop
ruby-openid
ruby-prof
rubycritic
rubyzip (~> 1.1.4)
sass-rails
savon (= 1.1.0)
search_biomodel (= 2.2.1)!
seedbank
simple-spreadsheet-extractor (~> 0.15.2)
site_announcements!
sqlite3
sunspot_matchers
sunspot_rails
sunspot_solr
taverna-player!
taverna-t2flow
test_after_commit
therubyracer
transaction_isolation
turbo-sprockets-rails3
uglifier
unicorn-rails
uuidtools
webmock
white_list!
white_list_formatted_content!
will_paginate (~> 3.0.4)
yaml_db
BUNDLED WITH
1.14.6