RFossilpol 1.0.0

A general description of all changes can be found in #57

README

remove .qmd (use only .md)
add version badge,
remove the logo file (use a link to the website instead)

Deprecated functions

remove all deprecated functions (moved to {RUtilpol}) (#58)

RFossilpol 0.0.2

A general description of all changes can be found in #13

Individual Workflow sections

Neotoma download

download pollen records one-by-one (#18, #50)
download Neotoma authors one-by-one (#41)
{neotoma2} package can be used for site selection but is not set as default due to performance issues (very slow) (#14, #27, #49)

Neotoma processing

small fixes regarding switching to the new version of {purrr} (#51)

Chronology

save age-depth models as individual files (#21)
- each AD model file carries information about chron.control table used for its creation (#32, #29, #31, #33)
chron_add_postbomb_curve: remove "&&" from multiple logical vector (#52)

Harmonisation

During cleaning of taxa names, save taxa_refrence_table for back trackability to Neotoma taxonomy (#36)

Outputs - References

general overhaul (#34, #37)
- user can select which output is saved using selected_outputs (new output "graphical_summary" which will produce an overview of data assembly)
- change the barplot into a lollipop figure for the number of records (#42, #39, #40)
taxa reference table has been added to the reproducibility bundle (#38)

Terminology change

"Private" to "Other" (#24)
"sequence" to "record" (#25)

Progress bars

add progress bar to most purrr::map*() functions (#48)

Utility functions

move utility to {RUtilpol} package (#16, #17, #28)
replace R.utils::withTimeout() with RUtilpol::do_in_time() (#35)
Spatial data is handled by {RUtilpol} (#47)

Package documentation and UI

update DESCRIPTION (#19, #55)
add package CITATION (#22)
add project logo (#43)
add onAttach message with version (#20)
stop dependency on {devtools} (#26)
check and clean namespace dependency (#45)
add NEWS to the REAMDE file (#56)

RFossilpol 0.0.1

release of the package