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peaks_Oct4.txt
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peaks_Oct4.txt
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# HOMER Peaks
# Peak finding parameters:
# tag directory = /home/h4zhu/lab5/tagdirs/Oct4
#
# total peaks = 2203
# peak size = 75
# peaks found using tags on both strands
# minimum distance between peaks = 150
# fragment length = 74
# genome size = 2000000000
# Total tags = 1733716.0
# Total tags in peaks = 45928.0
# Approximate IP efficiency = 2.65%
# tags per bp = 0.000795
# expected tags per peak = 0.060
# maximum tags considered per bp = 1.0
# effective number of tags used for normalization = 10000000.0
# Peaks have been centered at maximum tag pile-up
# FDR rate threshold = 0.001000000
# FDR effective poisson threshold = 5.024429e-07
# FDR tag threshold = 4.0
# number of putative peaks = 95516
#
# input tag directory = /home/h4zhu/lab5/tagdirs/input
# Fold over input required = 4.00
# Poisson p-value over input required = 1.00e-04
# Putative peaks filtered by input = 90247
#
# size of region used for local filtering = 10000
# Fold over local region required = 4.00
# Poisson p-value over local region required = 1.00e-04
# Putative peaks filtered by local signal = 3065
#
# Maximum fold under expected unique positions for tags = 2.00
# Putative peaks filtered for being too clonal = 1
#
# cmd = findPeaks /home/h4zhu/lab5/tagdirs/Oct4 -i /home/h4zhu/lab5/tagdirs/input -style factor -o auto
#
# Column Headers:
#PeakID chr start end strand Normalized Tag Count focus ratio findPeaks Score Total Tags (normalized to Control Experiment) Control Tags Fold Change vs Control p-value vs Control Fold Change vs Local p-value vs Local Clonal Fold Change
17-14 17 50427862 50427936 + 2532.1 0.831 77.000000 445.8 5.0 89.16 0.00e+00 63.81 0.00e+00 1.00
17-10 17 35504036 35504110 + 2382.2 0.798 77.000000 410.0 8.0 51.25 0.00e+00 48.33 0.00e+00 0.98
17-20 17 53561837 53561911 + 2036.1 0.721 75.000000 350.5 5.0 70.09 0.00e+00 40.83 0.00e+00 1.00
17-9 17 37079138 37079212 + 1563.1 0.805 78.000000 275.0 9.0 30.56 3.30e-295 37.01 7.88e-313 0.94
17-22 17 48616423 48616497 + 1447.8 0.864 74.000000 249.2 1.0 249.20 0.00e+00 50.18 1.72e-318 0.98
17-15 17 37990731 37990805 + 1418.9 0.697 76.000000 244.2 3.0 81.41 0.00e+00 51.91 6.55e-317 0.95
17-24 17 55952129 55952203 + 1234.3 0.708 72.000000 212.5 2.0 106.23 0.00e+00 42.84 9.84e-261 0.97
17-26 17 29187373 29187447 + 1170.9 0.737 71.000000 201.5 4.0 50.39 1.22e-258 44.48 3.23e-248 1.00
17-21 17 62109220 62109294 + 1165.1 0.777 75.000000 203.5 1.0 203.53 0.00e+00 59.27 3.88e-274 0.93
17-29 17 80635942 80636016 + 1090.1 0.693 68.000000 187.6 5.0 37.53 2.46e-217 42.24 3.59e-228 1.02
17-23 17 15208257 15208331 + 1084.4 0.723 72.000000 186.7 2.0 93.33 1.75e-288 38.34 3.90e-218 0.95
17-25 17 15380783 15380857 + 1049.8 0.699 71.000000 180.7 2.0 90.35 1.04e-276 27.40 1.23e-182 0.95
17-30 17 66479847 66479921 + 934.4 0.775 66.000000 161.8 9.0 17.98 7.39e-138 19.33 1.32e-138 0.98
17-33 17 70828320 70828394 + 894.0 0.786 64.000000 158.9 4.0 39.71 1.35e-187 23.25 1.16e-147 1.02
17-43 17 31057345 31057419 + 813.3 0.712 60.000000 142.0 5.0 28.39 1.32e-147 40.04 1.95e-168 1.08
17-32 17 90788253 90788327 + 801.7 0.723 66.000000 138.0 3.0 46.00 5.12e-173 37.65 5.43e-159 0.95
17-34 17 82306494 82306568 + 749.8 0.676 63.000000 131.1 4.0 32.76 1.65e-145 42.11 2.06e-153 0.95
17-40 17 47503869 47503943 + 721.0 0.626 61.000000 125.1 7.0 17.87 2.22e-107 21.59 3.04e-116 0.99
17-31 17 76111967 76112041 + 703.7 0.788 66.000000 121.1 4.0 30.28 1.65e-130 41.92 3.60e-147 0.89
17-39 17 29399385 29399459 + 686.4 0.704 61.000000 119.1 4.0 29.78 1.50e-127 29.15 2.38e-122 0.96
17-41 17 63176606 63176680 + 686.4 0.700 61.000000 120.1 3.0 40.04 1.37e-143 35.65 1.74e-135 0.97
17-42 17 75089454 75089528 + 674.9 0.687 61.000000 116.2 1.0 116.16 1.09e-191 36.46 2.53e-134 0.96
17-36 17 34340798 34340872 + 651.8 0.686 62.000000 112.2 3.0 37.40 7.09e-131 35.63 1.16e-128 0.92
17-44 17 83469751 83469825 + 651.8 0.763 59.000000 112.2 4.0 28.05 2.59e-117 25.42 8.64e-113 0.96
17-58 17 23601396 23601470 + 640.2 0.750 54.000000 111.2 4.0 27.80 7.26e-116 14.22 2.95e-82 1.06
17-48 17 14693380 14693454 + 634.5 0.670 57.000000 109.2 4.0 27.30 5.55e-113 34.41 8.66e-125 0.99
17-50 17 35165521 35165595 + 634.5 0.671 56.000000 109.2 5.0 21.84 7.53e-103 20.74 1.06e-99 1.00
17-49 17 15678013 15678087 + 628.7 0.745 56.000000 109.2 3.0 36.40 3.60e-126 27.53 1.91e-113 1.00
17-37 17 35939287 35939361 + 628.7 0.705 62.000000 108.2 4.0 27.05 1.51e-111 29.08 7.50e-114 0.90
17-38 17 25680022 25680096 + 622.9 0.724 61.000000 108.2 4.0 27.05 1.51e-111 35.58 6.11e-123 0.91
17-45 17 47571834 47571908 + 617.2 0.617 58.000000 106.2 8.0 13.28 1.69e-78 23.33 5.26e-104 0.96
17-47 17 85799361 85799435 + 571.0 0.537 58.000000 99.3 3.0 33.09 9.45e-111 26.96 2.42e-102 0.92
17-46 17 79654412 79654486 + 559.5 0.753 58.000000 97.3 2.0 48.65 2.28e-124 29.20 1.61e-102 0.91
17-60 17 83522761 83522835 + 553.7 0.756 54.000000 95.3 3.0 31.77 1.06e-104 15.79 2.69e-77 0.99
17-53 17 32295934 32296008 + 548.0 0.678 55.000000 94.3 1.0 94.32 3.42e-147 26.75 5.63e-98 0.94
17-71 17 87471769 87471843 + 548.0 0.642 52.000000 95.3 8.0 11.91 2.20e-66 19.24 1.32e-80 1.00
17-52 17 87558611 87558685 + 542.2 0.696 56.000000 93.3 3.0 31.11 1.05e-101 28.66 1.10e-99 0.93
17-96 17 64053784 64053858 + 536.4 0.651 47.000000 93.3 4.0 23.33 1.62e-90 42.29 6.59e-114 1.11
17-51 17 46812637 46812711 + 530.7 0.776 56.000000 93.3 1.0 93.33 3.21e-145 13.60 2.37e-69 0.94
17-55 17 82274119 82274193 + 524.9 0.827 55.000000 91.3 1.0 91.34 2.75e-141 20.57 4.37e-83 0.93
17-61 17 94648030 94648104 + 519.1 0.829 54.000000 89.4 3.0 29.78 9.08e-96 22.82 5.07e-86 0.96
17-35 17 26537935 26538009 + 507.6 0.837 62.000000 88.4 4.0 22.09 9.90e-84 24.41 1.54e-87 0.81
17-69 17 29405671 29405745 + 507.6 0.686 52.000000 89.4 4.0 22.34 4.45e-85 25.56 2.98e-86 0.97
17-87 17 70866758 70866832 + 501.8 0.592 49.000000 86.4 9.0 9.60 6.60e-53 12.94 1.61e-62 1.01
17-66 17 75557259 75557333 + 501.8 0.787 53.000000 87.4 1.0 87.37 1.77e-133 35.87 1.30e-100 0.94
17-63 17 11353281 11353355 + 496.0 0.707 53.000000 86.4 2.0 43.19 4.42e-106 25.98 7.91e-88 0.95
17-68 17 17740173 17740247 + 496.0 0.892 52.000000 85.4 6.0 14.23 1.31e-65 29.07 8.10e-91 0.95
17-59 17 78635807 78635881 + 490.3 0.809 54.000000 84.4 7.0 12.06 2.92e-59 23.68 1.54e-83 0.91
17-89 17 85646439 85646513 + 490.3 0.775 49.000000 87.4 3.0 29.12 7.91e-93 27.77 3.38e-89 1.01
17-79 17 9580168 9580242 + 484.5 0.766 50.000000 83.4 2.0 41.70 3.40e-101 26.21 3.90e-85 0.98
17-94 17 47914900 47914974 + 484.5 0.763 47.000000 83.4 2.0 41.70 3.40e-101 25.06 1.36e-82 1.11
17-67 17 86751664 86751738 + 484.5 0.838 53.000000 83.4 2.0 41.70 3.40e-101 20.19 3.95e-76 0.92
17-62 17 9722837 9722911 + 478.7 0.726 53.000000 83.4 4.0 20.85 4.56e-77 33.71 1.12e-91 0.93
17-99 17 29008080 29008154 + 478.7 0.613 46.000000 82.4 5.0 16.48 3.12e-68 17.45 2.64e-70 1.06
17-112 17 51462277 51462351 + 478.7 0.623 45.000000 82.4 3.0 27.47 1.45e-85 31.70 1.69e-88 1.06
17-83 17 29467598 29467672 + 473.0 0.727 49.000000 83.4 3.0 27.80 5.22e-87 17.60 9.16e-70 1.00
17-91 17 47818221 47818295 + 473.0 0.790 48.000000 83.4 3.0 27.80 5.22e-87 23.84 5.80e-79 1.00
17-102 17 43197436 43197510 + 467.2 0.791 46.000000 80.4 2.0 40.21 2.34e-96 35.77 1.43e-92 1.06
17-103 17 49048104 49048178 + 467.2 0.720 46.000000 80.4 2.0 40.21 2.34e-96 31.07 6.71e-89 1.05
17-74 17 52728960 52729034 + 467.2 0.688 51.000000 81.4 2.0 40.71 5.79e-98 45.81 3.39e-102 0.96
17-54 17 53551638 53551712 + 467.2 0.716 55.000000 80.4 1.0 80.42 5.20e-120 21.29 2.76e-74 0.88
17-77 17 90995568 90995642 + 467.2 0.722 51.000000 80.4 4.0 20.10 3.93e-73 34.14 4.12e-92 0.94
17-28 17 62049135 62049209 + 461.4 0.740 69.000000 81.4 3.0 27.14 3.95e-84 25.15 9.77e-81 0.71
17-90 17 27611027 27611101 + 455.7 0.774 48.000000 79.4 2.0 39.71 9.38e-95 28.03 2.47e-83 0.99
17-57 17 11533974 11534048 + 449.9 0.733 54.000000 81.4 3.0 27.14 3.95e-84 20.11 9.56e-70 0.87
17-93 17 33600040 33600114 + 444.1 0.667 47.000000 76.4 2.0 38.22 5.57e-90 18.29 9.21e-67 0.98
17-65 17 63533232 63533306 + 444.1 0.544 53.000000 76.4 1.0 76.45 1.98e-112 20.36 3.99e-70 0.87
17-108 17 24203283 24203357 + 438.4 0.638 45.000000 76.4 6.0 12.74 1.97e-55 15.75 2.46e-61 1.02
17-76 17 84713899 84713973 + 438.4 0.616 51.000000 75.5 6.0 12.58 2.49e-54 18.11 1.30e-65 0.90
17-106 17 88404719 88404793 + 438.4 0.620 46.000000 78.4 3.0 26.14 7.51e-80 23.95 3.05e-75 1.03
17-84 17 43592497 43592571 + 432.6 0.716 49.000000 74.5 4.0 18.62 2.09e-65 22.66 1.49e-72 0.96
17-100 17 31819522 31819596 + 426.8 0.643 46.000000 73.5 4.0 18.37 3.86e-64 18.61 9.89e-65 0.98
17-85 17 70403923 70403997 + 421.1 0.636 49.000000 72.5 3.0 24.16 1.91e-71 32.20 2.12e-81 0.90
17-86 17 70772767 70772841 + 421.1 0.572 49.000000 72.5 2.0 36.24 1.07e-83 17.50 6.97e-63 0.94
17-82 17 6860692 6860766 + 415.3 0.659 49.000000 74.5 3.0 24.82 3.18e-74 16.93 3.03e-60 0.91
17-72 17 29494502 29494576 + 415.3 0.742 51.000000 71.5 6.0 11.91 5.64e-50 14.84 3.30e-57 0.88
17-80 17 36982311 36982385 + 415.3 0.556 50.000000 71.5 7.0 10.21 1.19e-45 13.31 2.59e-53 0.91
17-73 17 51839660 51839734 + 415.3 0.851 51.000000 71.5 2.0 35.74 3.86e-82 20.34 1.34e-65 0.87
17-81 17 86926855 86926929 + 415.3 0.705 50.000000 71.5 2.0 35.74 3.86e-82 28.30 2.28e-75 0.91
17-92 17 93482502 93482576 + 415.3 0.613 48.000000 71.5 3.0 23.83 4.59e-70 27.26 3.28e-72 0.91
17-98 17 23789953 23790027 + 409.5 0.679 46.000000 70.5 3.0 23.50 1.09e-68 15.41 9.60e-57 0.98
17-78 17 3157257 3157331 + 403.8 0.758 50.000000 69.5 2.0 34.75 4.81e-79 26.31 3.47e-70 0.90
17-111 17 40893372 40893446 + 403.8 0.739 45.000000 69.5 2.0 34.75 4.81e-79 32.27 4.26e-77 0.97
17-134 17 63583003 63583077 + 403.8 0.767 41.000000 69.5 5.0 13.90 7.18e-53 33.20 6.25e-78 1.07
17-56 17 88334062 88334136 + 403.8 0.773 55.000000 69.5 1.0 69.50 2.18e-99 23.33 1.09e-68 0.83
17-109 17 36995600 36995674 + 398.0 0.607 45.000000 68.5 2.0 34.25 1.66e-77 11.46 4.43e-47 0.96
17-75 17 53592082 53592156 + 398.0 0.806 51.000000 68.5 4.0 17.13 6.83e-58 17.59 5.25e-58 0.84
17-105 17 83750397 83750471 + 398.0 0.609 46.000000 70.5 7.0 10.07 1.21e-44 14.40 4.63e-54 0.97
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