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peaks_Sox2.txt
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peaks_Sox2.txt
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# HOMER Peaks
# Peak finding parameters:
# tag directory = /home/h4zhu/lab5/tagdirs/Sox2
#
# total peaks = 2236
# peak size = 75
# peaks found using tags on both strands
# minimum distance between peaks = 150
# fragment length = 74
# genome size = 2000000000
# Total tags = 1717745.0
# Total tags in peaks = 47099.0
# Approximate IP efficiency = 2.74%
# tags per bp = 0.000826
# expected tags per peak = 0.062
# maximum tags considered per bp = 1.0
# effective number of tags used for normalization = 10000000.0
# Peaks have been centered at maximum tag pile-up
# FDR rate threshold = 0.001000000
# FDR effective poisson threshold = 5.834966e-07
# FDR tag threshold = 4.0
# number of putative peaks = 101193
#
# input tag directory = /home/h4zhu/lab5/tagdirs/input
# Fold over input required = 4.00
# Poisson p-value over input required = 1.00e-04
# Putative peaks filtered by input = 93712
#
# size of region used for local filtering = 10000
# Fold over local region required = 4.00
# Poisson p-value over local region required = 1.00e-04
# Putative peaks filtered by local signal = 5245
#
# Maximum fold under expected unique positions for tags = 2.00
# Putative peaks filtered for being too clonal = 0
#
# cmd = findPeaks /home/h4zhu/lab5/tagdirs/Sox2 -i /home/h4zhu/lab5/tagdirs/input -style factor -o auto
#
# Column Headers:
#PeakID chr start end strand Normalized Tag Count focus ratio findPeaks Score Total Tags Control Tags (normalized to IP Experiment) Fold Change vs Control p-value vs Control Fold Change vs Local p-value vs Local Clonal Fold Change
17-16 17 35504041 35504115 + 1991.0 0.834 77.000000 342.0 8.0 42.84 0.00e+00 35.43 0.00e+00 0.97
17-12 17 15208248 15208322 + 1734.8 0.705 79.000000 298.0 2.0 149.31 0.00e+00 61.28 0.00e+00 0.94
17-13 17 37079108 37079182 + 1653.3 0.658 78.000000 287.0 8.0 35.95 0.00e+00 41.01 0.00e+00 0.95
17-29 17 29187360 29187434 + 1449.6 0.764 71.000000 249.0 6.0 41.59 6.85e-300 52.63 1.22e-319 1.04
17-18 17 48616395 48616469 + 1432.1 0.708 76.000000 251.0 1.0 251.52 0.00e+00 50.17 2.87e-308 0.95
17-28 17 80635940 80636014 + 1403.0 0.622 72.000000 241.0 4.0 60.37 0.00e+00 46.04 3.02e-298 1.01
17-20 17 53561837 53561911 + 1333.1 0.821 74.000000 234.0 5.0 46.90 6.86e-294 23.56 1.65e-216 0.98
17-26 17 37990728 37990802 + 1234.2 0.670 72.000000 213.0 2.0 106.72 0.00e+00 41.92 5.99e-254 0.99
17-21 17 23601386 23601460 + 1164.3 0.715 73.000000 205.0 4.0 51.36 1.20e-265 25.36 1.08e-197 0.96
17-25 17 66479845 66479919 + 1100.3 0.678 73.000000 190.0 9.0 21.15 1.86e-175 22.04 5.09e-174 0.96
17-24 17 50427845 50427919 + 1094.5 0.788 73.000000 188.0 2.0 94.19 1.36e-292 46.63 2.47e-232 0.94
17-31 17 82306540 82306614 + 1094.5 0.759 70.000000 193.0 4.0 48.35 2.91e-245 46.15 1.47e-226 1.00
17-32 17 84351474 84351548 + 1082.8 0.705 70.000000 188.0 3.0 62.80 6.41e-260 32.69 1.29e-205 0.99
17-34 17 63176616 63176690 + 1071.2 0.875 68.000000 184.0 4.0 46.09 3.49e-230 57.56 1.35e-247 1.01
17-33 17 15380806 15380880 + 1036.2 0.689 68.000000 178.0 6.0 29.73 9.36e-190 26.44 5.38e-179 1.00
17-22 17 31057342 31057416 + 978.0 0.759 73.000000 169.0 5.0 33.87 1.55e-189 39.25 3.41e-194 0.92
17-27 17 70828317 70828391 + 937.3 0.737 72.000000 163.0 6.0 27.22 6.41e-168 22.33 1.14e-151 0.92
17-30 17 55952128 55952202 + 925.6 0.709 70.000000 164.0 1.0 164.34 8.00e-295 34.73 5.27e-179 0.94
17-38 17 62109212 62109286 + 844.1 0.764 66.000000 145.0 1.0 145.30 3.40e-253 43.30 2.52e-174 0.97
17-39 17 79654436 79654510 + 815.0 0.670 65.000000 142.0 4.0 35.57 1.64e-162 39.30 5.55e-165 0.98
17-46 17 76111948 76112022 + 780.1 0.714 61.000000 134.0 3.0 44.76 1.68e-166 37.44 1.35e-150 1.01
17-37 17 35939264 35939338 + 774.3 0.661 67.000000 134.0 5.0 26.86 1.24e-137 35.40 1.13e-148 0.92
17-44 17 87558625 87558699 + 756.8 0.742 63.000000 130.0 2.0 65.13 2.22e-182 39.89 4.68e-154 1.00
17-41 17 15678013 15678087 + 698.6 0.654 63.000000 120.0 3.0 40.08 1.08e-143 26.03 6.95e-120 0.94
17-42 17 17740126 17740200 + 686.9 0.707 63.000000 119.0 7.0 17.04 5.08e-100 27.18 5.87e-118 0.96
17-54 17 87973886 87973960 + 686.9 0.580 59.000000 120.0 7.0 17.18 2.96e-101 20.88 4.56e-109 1.01
17-45 17 47503889 47503963 + 681.1 0.836 61.000000 118.0 6.0 19.71 2.94e-106 26.10 4.98e-117 0.98
17-35 17 87471826 87471900 + 681.1 0.828 68.000000 118.0 6.0 19.71 2.94e-106 23.43 6.96e-111 0.86
17-48 17 32295941 32296015 + 634.6 0.760 59.000000 109.0 2.0 54.61 4.97e-145 26.76 3.77e-111 0.99
17-49 17 33600053 33600127 + 622.9 0.781 59.000000 108.0 1.0 108.22 2.23e-175 26.47 1.26e-107 0.97
17-40 17 47571864 47571938 + 622.9 0.867 64.000000 107.0 7.0 15.32 1.72e-85 23.21 8.71e-104 0.89
17-53 17 83522722 83522796 + 611.3 0.667 59.000000 106.0 4.0 26.55 8.85e-109 18.23 2.09e-91 0.96
17-43 17 51462277 51462351 + 605.4 0.585 63.000000 108.0 3.0 36.07 1.05e-124 41.18 8.69e-125 0.90
17-50 17 43197434 43197508 + 599.6 0.785 59.000000 104.0 2.0 52.11 2.20e-136 37.45 1.21e-120 0.95
17-52 17 46812635 46812709 + 599.6 0.749 59.000000 103.0 4.0 25.80 1.61e-104 16.54 8.87e-85 0.95
17-57 17 34340786 34340860 + 588.0 0.638 57.000000 104.0 4.0 26.05 6.19e-106 32.35 6.41e-110 0.97
17-70 17 40495659 40495733 + 564.7 0.837 53.000000 98.0 6.0 16.37 4.20e-81 29.37 8.36e-104 1.03
17-47 17 78635799 78635873 + 564.7 0.704 60.000000 97.0 7.0 13.89 8.00e-74 23.10 4.09e-93 0.90
17-101 17 94651684 94651758 + 564.7 0.761 48.000000 97.0 1.0 97.20 3.14e-153 19.76 6.66e-87 1.30
17-36 17 26537931 26538005 + 558.9 0.759 67.000000 98.0 3.0 32.73 2.56e-109 29.03 3.07e-101 0.83
17-58 17 47713414 47713488 + 547.2 0.706 57.000000 94.0 9.0 10.47 5.26e-61 26.92 3.19e-97 0.94
17-59 17 70866724 70866798 + 541.4 0.446 56.000000 94.0 8.0 11.77 2.19e-65 12.30 1.25e-65 0.96
17-51 17 43592526 43592600 + 535.6 0.797 59.000000 92.0 2.0 46.09 4.57e-116 30.96 1.66e-99 0.89
17-65 17 93482489 93482563 + 535.6 0.631 55.000000 92.0 3.0 30.73 2.70e-100 29.01 6.24e-95 0.95
17-74 17 84713918 84713992 + 523.9 0.691 53.000000 90.0 7.0 12.88 6.42e-66 22.56 1.36e-85 0.98
17-61 17 14693400 14693474 + 500.7 0.692 55.000000 86.0 3.0 28.73 1.93e-91 25.80 1.41e-86 0.92
17-60 17 90788267 90788341 + 500.7 0.628 56.000000 86.0 2.0 43.09 3.72e-106 26.91 4.50e-88 0.90
17-55 17 29405677 29405751 + 494.8 0.730 58.000000 86.0 4.0 21.54 4.01e-81 32.23 1.65e-94 0.87
17-64 17 85799354 85799428 + 494.8 0.620 55.000000 85.0 3.0 28.39 5.55e-90 29.07 8.10e-91 0.90
17-78 17 94648020 94648094 + 494.8 0.717 52.000000 85.0 4.0 21.29 8.64e-80 18.90 7.06e-74 0.96
17-88 17 72882011 72882085 + 489.0 0.649 50.000000 84.0 2.0 42.09 6.83e-103 36.29 2.41e-95 0.99
17-90 17 31819528 31819602 + 483.2 0.639 49.000000 83.0 4.0 20.79 3.87e-77 25.25 7.76e-84 1.00
17-86 17 70772775 70772849 + 483.2 0.687 50.000000 83.0 3.0 27.72 4.43e-87 19.54 5.15e-75 0.98
17-63 17 75557271 75557345 + 483.2 0.832 55.000000 85.0 3.0 28.39 5.55e-90 27.40 1.18e-85 0.92
17-83 17 84355221 84355295 + 483.2 0.711 51.000000 85.0 4.0 21.29 8.64e-80 12.19 2.05e-58 0.99
17-79 17 3460714 3460788 + 477.4 0.703 51.000000 82.0 5.0 16.43 2.66e-68 29.98 9.70e-89 0.99
17-80 17 25680011 25680085 + 477.4 0.674 51.000000 82.0 4.0 20.54 8.06e-76 32.88 9.92e-90 0.96
17-66 17 9722848 9722922 + 471.5 0.711 54.000000 86.0 7.0 12.31 1.66e-61 35.49 1.92e-93 0.93
17-56 17 33063192 33063266 + 471.5 0.648 57.000000 82.0 3.0 27.39 1.23e-85 32.48 2.05e-90 0.86
17-103 17 64053800 64053874 + 471.5 0.762 47.000000 84.0 4.0 21.04 1.84e-78 39.12 8.94e-97 1.05
17-62 17 66457426 66457500 + 471.5 0.743 55.000000 82.0 8.0 10.27 7.58e-53 23.06 7.40e-78 0.92
17-92 17 3157279 3157353 + 465.7 0.848 48.000000 81.0 2.0 40.58 4.92e-98 27.71 5.48e-84 1.02
17-96 17 29467589 29467663 + 465.7 0.667 48.000000 80.0 5.0 16.03 7.11e-66 19.85 4.17e-71 1.01
17-77 17 83750412 83750486 + 465.7 0.693 52.000000 81.0 7.0 11.60 4.19e-56 15.37 1.73e-64 0.94
17-76 17 71420444 71420518 + 459.9 0.712 52.000000 82.0 1.0 82.17 6.55e-124 26.40 2.44e-79 0.94
17-75 17 29008110 29008184 + 454.1 0.725 52.000000 79.0 5.0 15.83 1.14e-64 13.03 5.18e-57 0.94
17-84 17 88404719 88404793 + 454.1 0.733 51.000000 79.0 3.0 26.39 2.44e-81 31.93 2.13e-84 0.96
17-87 17 70828750 70828824 + 448.3 0.533 50.000000 77.0 5.0 15.43 2.83e-62 9.75 1.50e-47 0.96
17-85 17 9580172 9580246 + 442.4 0.728 50.000000 77.0 2.0 38.58 1.24e-91 29.11 2.15e-80 0.97
17-98 17 36099750 36099824 + 442.4 0.793 48.000000 76.0 3.0 25.39 4.31e-77 36.84 5.52e-89 1.02
17-82 17 53551663 53551737 + 436.6 0.862 51.000000 75.0 3.0 25.05 1.10e-75 20.15 5.19e-68 0.92
17-69 17 6860673 6860747 + 430.8 0.658 53.000000 74.0 3.0 24.72 2.75e-74 21.27 7.86e-68 0.87
17-94 17 10335253 10335327 + 430.8 0.726 48.000000 74.0 5.0 14.83 1.00e-58 20.97 3.12e-69 0.96
17-97 17 35505077 35505151 + 430.8 0.640 48.000000 74.0 4.0 18.54 1.81e-65 6.01 5.38e-32 1.01
17-71 17 45607252 45607326 + 430.8 0.596 53.000000 74.0 3.0 24.72 2.75e-74 13.77 5.03e-55 0.87
17-72 17 56833564 56833638 + 430.8 0.640 53.000000 74.0 7.0 10.59 9.12e-49 16.89 8.07e-62 0.90
17-114 17 79343176 79343250 + 425.0 0.714 45.000000 73.0 5.0 14.63 1.49e-57 20.62 6.49e-67 1.05
17-102 17 63583019 63583093 + 419.2 0.810 47.000000 73.0 3.0 24.38 6.79e-73 40.03 6.25e-87 0.98
17-91 17 83469714 83469788 + 419.2 0.611 49.000000 72.0 5.0 14.43 2.18e-56 18.87 2.11e-63 0.98
17-81 17 44472817 44472891 + 413.3 0.735 51.000000 71.0 2.0 35.57 3.35e-82 27.82 7.92e-74 0.95
17-104 17 64873767 64873841 + 413.3 0.786 47.000000 71.0 7.0 10.16 1.05e-45 25.88 1.04e-71 0.97
17-113 17 52728956 52729030 + 401.7 0.681 45.000000 70.0 2.0 35.07 1.19e-80 37.27 2.70e-81 1.00
17-121 17 70403902 70403976 + 395.9 0.617 44.000000 68.0 3.0 22.71 5.11e-66 29.12 4.47e-73 0.99
17-109 17 11533973 11534047 + 390.0 0.726 45.000000 69.0 3.0 23.05 2.21e-67 20.48 3.40e-62 1.03
17-67 17 27501905 27501979 + 390.0 0.824 54.000000 67.0 1.0 67.14 8.80e-96 20.82 4.05e-58 0.79
17-89 17 29008484 29008558 + 390.0 0.707 49.000000 67.0 4.0 16.78 1.02e-56 11.14 5.32e-45 0.89
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