From 1e7a864e05606ef2272bb12efa7225594d0989c6 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Thu, 5 Dec 2024 19:19:44 +0000 Subject: [PATCH] Re-build my-document by in # --- .../usrsvforecasts_2024-11-20_17Nov2024.html | 3715 ++++++++++++++++ .../usrsvforecasts_2024-12-04_01Dec2024.html | 3958 +++++++++++++++++ index.html | 143 +- 3 files changed, 7692 insertions(+), 124 deletions(-) create mode 100644 archive/usrsvforecasts_2024-11-20_17Nov2024.html create mode 100644 archive/usrsvforecasts_2024-12-04_01Dec2024.html diff --git a/archive/usrsvforecasts_2024-11-20_17Nov2024.html b/archive/usrsvforecasts_2024-11-20_17Nov2024.html new file mode 100644 index 0000000..8b3c65e --- /dev/null +++ b/archive/usrsvforecasts_2024-11-20_17Nov2024.html @@ -0,0 +1,3715 @@ + + + + + + + + + + + + + +US RSV Forecast Hub + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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+Updated 2024/11/20 14:50 +

+
+

Overview

+

The US RSV Forecast Hub is as a collaborative forecasting effort to +produce weekly short-term forecasts of weekly laboratory-confirmed RSV +hospital admissions for the US and individual states. Each week, +participants are asked to provide national- and jurisdiction-specific +probabilistic forecasts of the weekly number of confirmed RSV +hospitalizations for the following four weeks. The US RSV Forecast Hub +is open to any team willing to provide projections at the right temporal +and spatial scales. We only require that participating teams share point +estimates and uncertainty bounds, along with a short model description +and answers to a list of key questions about design.

+

Those interested in participating, please see the README file in the +Github +repository.

+

If you are interested in longer-term scenario projections of RSV in +the US, please take a look at the US RSV Scenario Modeling +Hub.

+


+
+
+

National Forecast

+

RSV hospital admission forecast for the United States +(national-level) for all age groups (0-130yr), weekly incident +admissions:

+
+ +

Note: The dashed red line represents the peak of national RSV +hospitalizations during the 2023-24 season.

+



+
+
+

State- and Age-Specific Forecasts

+
+

By State

+

State-level forecasts

+
+ +
+
+

By Age

+

National-level forecasts by Age

+
+ + + +



+
+
+
+

Evaluation

+

Evaluation will begin 4 weeks after the first model submissions.

+



+
+
+

Previous Forecasts Archive

+

Previous weeks’ forecasts are available in the archive and can be +accessed in the links below. These forecasts are not updated with +updated ground truth data, thus the ground truth data may differ between +them as data are back-filled.

+ + +
+
+

RSV-NET Data (ground truth data)

+

The Respiratory Syncytial Virus Hospitalization Surveillance Network +(RSV-NET) is a network that conducts active, population-based +surveillance for laboratory-confirmed RSV-associated hospitalizations in +children younger than 18 years of age and adults. The network currently +includes 58 counties in 12 states that participate in the Emerging +Infections Program (California, Colorado, Connecticut, Georgia, +Maryland, Minnesota, New Mexico, New York, Oregon, and Tennessee) or the +Influenza Hospitalization Surveillance Program (Michigan and Utah). Age- +and state-specific data on laboratory-confirmed RSV hospitalization +rates are available for 12 states and the US from RSV-NET spanning +2017-18 to present (RSV-NET CDC +Webpage). Age-specific weekly rates per 100,000 population are +reported in this system.

+

The data has been standardized and posted on the rsv-forecast-hub +GitHub target-data/ +folder and is updated weekly. The target in this data is the weekly +number of hospitalizations in each given state (inc_hosp variable), for +all ages and for each age group. To obtain counts, we have converted +RSV-NET weekly rates based on state population sizes. This method +assumes that RSV-NET hospitals are representative of the whole state. To +obtain national US counts, we have used the rates provided for the +“overall RSV-NET network”. The data covers 2017-present. Reported age +groups include: [0-6 months], [6-12 months], [1-2 yr], [2-4 yr], [5-17 +yr], [18-49 yr], [50-64 yr], and 65+ years. The standardized dataset +includes week-, state-, and age-specific RSV counts (the target), rates, +and population sizes.

+



+
+
+

Contributing Teams and Models

+ +++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
TeamModelBrief Description
CEPH Lab at Indiana UniversityRtrend RSVA renewal equation method based on Bayesian +estimation of Rt from past hospitalization data.
Columbia UniversityRSV_SVIRSAge-structured SVIRS model coupled with Ensemble +Adjustment Kalman Filter. Inputs CDC RSV-NET, POLYMOD contact matrix, +and seasonal absolute humidity
The Center for Systems Science and Engineering at Johns +Hopkins UniversityCSSE Multi-pathogen Model for RSVA data-driven multipathogen modeling approach to +forecast RSV hospitalizations
Predictive Science Inc.Package for Respiratory Disease Open-source +ForecastingWe fit and extrapolate an age-stratified SIR +compartmental model with four levels of natural immunity as well as +infant/elder vaccination.
UGA_flucastINFLAenzaA spatial time-series model that uses the R-INLA +package for estimating forecast posterior distributions.
University of Michigan, Computer Science and +EngineeringDeepOutbreakDeep neural network model with conformal +predictions.
+
+ + + +
+
+ +
+ + + + + + + + + + + + + + + + diff --git a/archive/usrsvforecasts_2024-12-04_01Dec2024.html b/archive/usrsvforecasts_2024-12-04_01Dec2024.html new file mode 100644 index 0000000..385152c --- /dev/null +++ b/archive/usrsvforecasts_2024-12-04_01Dec2024.html @@ -0,0 +1,3958 @@ + + + + + + + + + + + + + +US RSV Forecast Hub + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +
+
+
+
+
+ +
+ + + + + + + + +

+Updated 2024/12/04 18:07 +

+
+

Overview

+

The US RSV Forecast Hub is as a collaborative forecasting effort to +produce weekly short-term forecasts of weekly laboratory-confirmed RSV +hospital admissions for the US and individual states. Each week, +participants are asked to provide national- and jurisdiction-specific +probabilistic forecasts of the weekly number of confirmed RSV +hospitalizations for the following four weeks. The US RSV Forecast Hub +is open to any team willing to provide projections at the right temporal +and spatial scales. We only require that participating teams share point +estimates and uncertainty bounds, along with a short model description +and answers to a list of key questions about design.

+

Those interested in participating, please see the README file in the +Github +repository.

+

If you are interested in longer-term scenario projections of RSV in +the US, please take a look at the US RSV Scenario Modeling +Hub.

+


+
+
+

National Forecast

+

RSV hospital admission forecast for the United States +(national-level) for all age groups (0-130yr), weekly incident +admissions:

+
+ +

Note: The dashed red line represents the peak of national RSV +hospitalizations during the 2023-24 season.

+



+
+
+

State- and Age-Specific Forecasts

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +



+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +



+
+
+

Previous Forecasts Archive

+

Previous weeks’ forecasts are available in the archive and can be +accessed in the links below. These forecasts are not updated with +updated ground truth data, thus the ground truth data may differ between +them as data are back-filled.

+ + +
+
+

RSV-NET Data (ground truth data)

+

The Respiratory Syncytial Virus Hospitalization Surveillance Network +(RSV-NET) is a network that conducts active, population-based +surveillance for laboratory-confirmed RSV-associated hospitalizations in +children younger than 18 years of age and adults. The network currently +includes 58 counties in 12 states that participate in the Emerging +Infections Program (California, Colorado, Connecticut, Georgia, +Maryland, Minnesota, New Mexico, New York, Oregon, and Tennessee) or the +Influenza Hospitalization Surveillance Program (Michigan and Utah). Age- +and state-specific data on laboratory-confirmed RSV hospitalization +rates are available for 12 states and the US from RSV-NET spanning +2017-18 to present (RSV-NET CDC +Webpage). Age-specific weekly rates per 100,000 population are +reported in this system.

+

The data has been standardized and posted on the rsv-forecast-hub +GitHub target-data/ +folder and is updated weekly. The target in this data is the weekly +number of hospitalizations in each given state (inc_hosp variable), for +all ages and for each age group. To obtain counts, we have converted +RSV-NET weekly rates based on state population sizes. This method +assumes that RSV-NET hospitals are representative of the whole state. To +obtain national US counts, we have used the rates provided for the +“overall RSV-NET network”. The data covers 2017-present. Reported age +groups include: [0-6 months], [6-12 months], [1-2 yr], [2-4 yr], [5-17 +yr], [18-49 yr], [50-64 yr], and 65+ years. The standardized dataset +includes week-, state-, and age-specific RSV counts (the target), rates, +and population sizes.

+



+
+
+

Contributing Teams and Models

+ +++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
TeamModelBrief Description
CEPH Lab at Indiana UniversityRtrend RSVA renewal equation method based on Bayesian +estimation of Rt from past hospitalization data.
Columbia UniversityRSV_SVIRSAge-structured SVIRS model coupled with Ensemble +Adjustment Kalman Filter. Inputs CDC RSV-NET, POLYMOD contact matrix, +and seasonal absolute humidity
The Center for Systems Science and Engineering at Johns +Hopkins UniversityCSSE Multi-pathogen Model for RSVA data-driven multipathogen modeling approach to +forecast RSV hospitalizations
MetaculusMetaculus Community PredictionA recency-weighted average of predictions made by +forecasters on the Metaculus prediction platform. Missing forecasts are +linearly interpolated.
Predictive Science Inc.Package for Respiratory Disease Open-source +ForecastingWe fit and extrapolate an age-stratified SIR +compartmental model with four levels of natural immunity as well as +infant/elder vaccination.
UGA_flucastINFLAenzaA spatial time-series model that uses the R-INLA +package for estimating forecast posterior distributions.
+
+ + + +
+
+ +
+ + + + + + + + + + + + + + + + diff --git a/index.html b/index.html index 385152c..fc4bda3 100644 --- a/index.html +++ b/index.html @@ -3436,7 +3436,7 @@

US RSV Forecast Hub

}

-Updated 2024/12/04 18:07 +Updated 2024/12/05 19:19

Overview

@@ -3463,135 +3463,25 @@

National Forecast

RSV hospital admission forecast for the United States (national-level) for all age groups (0-130yr), weekly incident admissions:

-
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Note: The dashed red line represents the peak of national RSV hospitalizations during the 2023-24 season.



State- and Age-Specific Forecasts

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By State

+

State-level forecasts

+
+ +
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By Age

+

National-level forecasts by Age

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+



@@ -3735,6 +3625,7 @@

State- and Age-Specific Forecasts



+

Previous Forecasts Archive

Previous weeks’ forecasts are available in the archive and can be @@ -3743,6 +3634,10 @@

Previous Forecasts Archive

them as data are back-filled.

2024-25 RSV Season

+

Dec +01, 2024 (Epi Week 49, this week)

+

Nov +17, 2024 (Epi Week 47)

Nov 10, 2024 (Epi Week 46)

Nov