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environment.yml
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environment.yml
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# Simple install with
# mamba env create -f environment.yml
name: myria3d
channels:
- pytorch
- nvidia
- pyg
- comet_ml
- conda-forge
dependencies:
- python=3.9.*
- pip
# --------- Deep Learning --------- #
- pytorch::pytorch=2.1
- pytorch::pytorch-cuda=11.8
- pytorch::torchvision=0.16
- conda-forge::lightning=2.0
- conda-forge::torchmetrics=0.11
- pyg::pyg=2.4
- pyg::pytorch-cluster
- pyg::pytorch-scatter
- pyg::pytorch-sparse
# Troubleshooting: if libcusparse.so.11. errors occur, run
# export LD_LIBRARY_PATH="/home/${USER}/miniconda/envs/lib:$LD_LIBRARY_PATH"
# ou
# export LD_LIBRARY_PATH="/home/${USER}/anaconda3/envs/lib:$LD_LIBRARY_PATH"
# see https://github.com/pyg-team/pytorch_geometric/issues/2040#issuecomment-766610625
# --------- data formats --------- #
- numpy
- h5py
# --------- geo --------- #
- pdal==2.6.*
- python-pdal
- conda-forge:gdal
- conda_forge:pyproj
# --------- Visualization --------- #
- pandas
- matplotlib
# --------- loggers --------- #
- comet_ml::comet_ml=3.35
- conda-forge::urllib3<2 # To solve for https://github.com/GeneralMills/pytrends/issues/591
# --------- Visualization --------- #
- pandas
- matplotlib
- seaborn # used in some callbacks
# --------- linters --------- #
- pre-commit # hooks for applying linters on commit
- black # code formatting
- isort # import sorting
- flake8 # code analysis
# --------- tests --------- #
- pytest==7.1.*
- coverage==6.3.*
- pytest-cov==3.0.*
# --------- others --------- #
- python-dotenv # loading env variables from .env file
- rich # beautiful text formatting in terminal
- sh # for running bash commands in some tests
- pudb # debugger
- twine # to publish pip package
# # --------- Documentation --------- #
- sphinx==4.5.*
- recommonmark==0.7.*
- sphinx_rtd_theme==1.0.*
- docutils==0.17
- rstcheck==3.3.* # RST Linter
- pip:
- hydra-core==1.1.*
- hydra-colorlog==1.1.*
# --------- Documentation --------- #
- myst_parser==0.17.*
- sphinxnotes-mock==1.0.0b0 # still a beta
- sphinx_paramlinks==0.5.*
- ign-pdal-tools>=1.5.2