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Adding FHIR CodeSystem dumping. #368

Merged
merged 4 commits into from
Nov 30, 2022
Merged

Adding FHIR CodeSystem dumping. #368

merged 4 commits into from
Nov 30, 2022

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cmungall
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Fixes #367

May replace #320

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codecov-commenter commented Nov 30, 2022

Codecov Report

Base: 79.48% // Head: 79.66% // Increases project coverage by +0.18% 🎉

Coverage data is based on head (9045e97) compared to base (b4e7a27).
Patch coverage: 85.68% of modified lines in pull request are covered.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #368      +/-   ##
==========================================
+ Coverage   79.48%   79.66%   +0.18%     
==========================================
  Files         181      186       +5     
  Lines       19353    19753     +400     
==========================================
+ Hits        15382    15736     +354     
- Misses       3971     4017      +46     
Impacted Files Coverage Δ
.../oaklib/converters/logical_definition_flattener.py 90.47% <50.00%> (-2.03%) ⬇️
src/oaklib/io/streaming_fhir_writer.py 50.00% <50.00%> (ø)
src/oaklib/converters/data_model_converter.py 88.88% <66.66%> (-4.45%) ⬇️
...aklib/converters/obo_graph_to_rdf_owl_converter.py 98.80% <80.00%> (+0.07%) ⬆️
...ib/implementations/pronto/pronto_implementation.py 89.12% <81.25%> (+0.12%) ⬆️
src/oaklib/datamodels/fhir.py 82.05% <82.05%> (ø)
...ib/converters/obo_graph_to_obo_format_converter.py 98.41% <83.33%> (+0.16%) ⬆️
src/oaklib/interfaces/dumper_interface.py 86.20% <86.20%> (ø)
tests/test_cli.py 98.31% <96.29%> (-0.15%) ⬇️
...c/oaklib/converters/obo_graph_to_fhir_converter.py 96.82% <96.82%> (ø)
... and 11 more

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@cmungall cmungall merged commit b8fd5ad into main Nov 30, 2022
@cmungall cmungall deleted the fhir-output branch November 30, 2022 23:48
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Add a FHIR CodeSystem dumper
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