Error calling pepstats

[Patadu]

Hi,

I am trying to run EffectoP 2 on the university cluster. I have followed the instruction to install it and when I run the EffectorP.py using either the EffectorTest File or my own files I do get the following error:

Call pepstats...
Error calling pepstats: [Errno 2] No such file or directory: '/media/scratchpad_01/guest21/EffectorP/EffectorP-2.0-2.0.1/Scripts/EMBOSS-6.5.7/emboss/pepstats'

I have looked into the emboss directory and actually I do not find the pepstats file but the pepstats.c file. Is this the cause of the error? Please, could you help me in solving it?

Thanks in advance for your help.

Best regards,
Luigi

[JanaSperschneider]

Hi Luigi,

sounds like the compilation of pepstats did not succeed. You need to run:

cd EMBOSS-6.5.7/
./configure
make
cd ../

for pepstats.c to successfully compile into pepstats.

Best wishes,
Jana

[Patadu]

Hi Jana,

Thanks for your reply. I did run that command but yet I get the pepstats errors. I have also tried to unistall it and compile it again but I do always get the same error.

I do not know if it can be of help in finding a solution for the problem, but I am working on the university cluster and using the putty terminal to run the code.

Best regards,
Luigi

[Patadu]

I run it again and I realized that at the end of "make" I do get the following errors. Might this also affect pepstats?

[JanaSperschneider]

Can you find the first error that the make command throws? It would be higher up in the log file image you pasted.

[Patadu]

Hi Jana,

I will try to run again the code today/tomorrow and I will update you about the error.

[Patadu]

Hi Jana,

I complied again ./configure and make but I do not see any error (to be honest I would not know how to check for errors, i just scroll through the file). However, the same error appears at the end of make.