setup.py

from setuptools import setup,find_packages

config = {
    'include_package_data': True,
    'description': 'keras Accessibility Models (kerasAC)',
    'download_url': 'https://github.com/kundajelab/kerasAC',
    'version': '2.5.4',
    'packages': ['kerasAC'],
    'setup_requires': [],
    'install_requires': ['tensorflow-gpu>=2.3','pysam', 'tiledb>=0.5.2','psutil','tables','numpy>=1.9', 'keras>=2.4', 'h5py', 'pandas','pybigwig','deeplift','abstention','boto3','modisco'],
    'scripts': [],
    'entry_points': {'console_scripts': ['kerasAC_train = kerasAC.train:main',
                                         'kerasAC_predict_hdf5=kerasAC.predict_hdf5:main',
                                         'kerasAC_predict_tdb=kerasAC.predict_tiledb:main',
                                         'kerasAC_calibrate=kerasAC.calibrate:main',
                                         'kerasAC_curves=kerasAC.curves:main',
                                         'kerasAC_score=kerasAC.performance_metrics.performance_metrics:main',
                                         'kerasAC_score_bpnet=kerasAC.performance_metrics.bpnet_performance_metrics:main',
                                         'kerasAC_score_bpnet_legacy=kerasAC.performance_metrics.bpnet_performance_metrics_legacy:main',
                                         'kerasAC_interpret=kerasAC.interpret:main',
                                         'kerasAC_bpnet_shap_wrapper=kerasAC.interpret.bpnet_shap_wrapper:main',
                                         'kerasAC_plot_interpretation=kerasAC.plot_interpretation:main',
                                         'kerasAC_cross_validate=kerasAC.cross_validate:main',
                                         'kerasAC_loss_weights_bpnet=kerasAC.helpers.get_loss_weights_for_bpnet:main',
                                         'kerasAC_bigwigs_from_io=kerasAC.helpers.generate_bigwigs_from_bpnet_io:main',
                                         'kerasAC_bigwigs_from_deepshap=kerasAC.helpers.deepshap_to_bigwig:main',
                                         'kerasAC_aggregate_summaries=kerasAC.helpers.aggregate_summaries:main',
                                         'kerasAC_form_modisco_inputs=kerasAC.interpret.form_modisco_inputs:main',
                                         'kerasAC_run_modisco=kerasAC.interpret.run_modisco:main',
                                         'kerasAC_trim_modisco=kerasAC.helpers.trim_modisco:main',
                                         'kerasAC_tomtom_scan_modisco=kerasAC.helpers.fetch_tomtom:main',
                                         'kerasAC_aggregate_tomtom_motifs=kerasAC.helpers.aggregate_modisco_meme_motifs:main',
                                         'kerasAC_plot_motifs=kerasAC.helpers.make_motif_plots:main',
                                         'kerasAC_html_modisco=kerasAC.helpers.make_html_modisco_vis:main']},
    'name': 'kerasAC'
}

if __name__== '__main__':
    setup(**config)