Bump healpy from 1.16.5 to 1.16.6 #125
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| --- | |
| # MegaLinter GitHub Action configuration file | |
| # More info at https://megalinter.io | |
| name: MegaLinter | |
| permissions: | |
| checks: write | |
| pull-requests: write | |
| contents: write | |
| on: # yamllint disable-line rule:truthy | |
| # Trigger mega-linter at every push. Action will also be visible from Pull Requests to main | |
| push: # Comment this line to trigger action only on pull-requests (not recommended if you don't pay for GH Actions) | |
| pull_request: | |
| branches: [master, main] | |
| env: # Comment env block if you do not want to apply fixes | |
| # Apply linter fixes configuration | |
| APPLY_FIXES: all # When active, APPLY_FIXES must also be defined as environment variable (in github/workflows/mega-linter.yml or other CI tool) | |
| APPLY_FIXES_EVENT: push # Decide which event triggers application of fixes in a commit or a PR (pull_request, push, all) | |
| # I tried around a lot to make the test workflow run on pull_request events, | |
| # but it it only worked when creating a new PR. By default, this would target the branch of the PR | |
| # and not the main branch. Instead of trying around to cherry-pick the commits from the PR | |
| # etc. I decided to just run the workflow on push events to the main branch and then create | |
| # a PR targeting the main branch. | |
| APPLY_FIXES_MODE: pull_request # If APPLY_FIXES is used, defines if the fixes are directly committed (commit) or posted in a PR (pull_request) | |
| concurrency: | |
| group: ${{ github.ref }}-${{ github.workflow }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| name: MegaLinter | |
| runs-on: ubuntu-latest | |
| permissions: | |
| # Give the default GITHUB_TOKEN write permission to commit and push, comment issues & post new PR | |
| # Remove the ones you do not need | |
| contents: write | |
| issues: write | |
| pull-requests: write | |
| steps: | |
| - name: Checkout Code | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.head_ref }} | |
| fetch-depth: 0 | |
| - name: Create alpine-wheels folder | |
| run: mkdir alpine-wheels | |
| - name: Cache wheel directory | |
| id: cache-wheels | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ github.workspace }}/alpine-wheels | |
| key: ${{ runner.os }}-alpine-wheels-${{ hashFiles('requirements-dev.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-alpine-wheels-${{ hashFiles('requirements-dev.txt') }} | |
| - name: Set up Alpine Linux | |
| if: steps.cache-wheels.outputs.cache-hit != 'true' | |
| uses: jirutka/setup-alpine@v1 | |
| with: # cfitsio, py3-pkgconfig, curl-dev, and zlib for healpy | |
| packages: > | |
| build-base | |
| python3-dev | |
| py3-pip | |
| gfortran | |
| fftw-dev | |
| git | |
| openblas-dev | |
| cmake | |
| geos-dev | |
| cfitsio | |
| py3-pkgconfig | |
| curl-dev | |
| zlib-dev | |
| - name: List workspace | |
| run: ls -l . | |
| - name: Upgrade pip and install requirements for building | |
| if: steps.cache-wheels.outputs.cache-hit != 'true' | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install meson-python meson ninja wheel build | |
| shell: alpine.sh {0} | |
| - name: Remove version settings | |
| if: steps.cache-wheels.outputs.cache-hit != 'true' | |
| run: | | |
| sed 's/==.*//' requirements-dev.txt > requirements-dev_no_version.txt | |
| shell: alpine.sh {0} | |
| - name: Run CMake to find LAPACK | |
| if: steps.cache-wheels.outputs.cache-hit != 'true' | |
| run: | | |
| echo "find_package(LAPACK)" > CMakeLists.txt | |
| echo "if(LAPACK_FOUND)" >> CMakeLists.txt | |
| echo ' message("LAPACK found")' >> CMakeLists.txt | |
| echo ' message("LAPACK include dirs: ${LAPACK_INCLUDE_DIRS}")' >> CMakeLists.txt | |
| echo ' message("LAPACK libraries: ${LAPACK_LIBRARIES}")' >> CMakeLists.txt | |
| echo "else()" >> CMakeLists.txt | |
| echo ' message(FATAL_ERROR "LAPACK not found")' >> CMakeLists.txt | |
| echo "endif()" >> CMakeLists.txt | |
| cmake . | |
| shell: alpine.sh {0} | |
| - name: Run pkg-config to find LAPACK | |
| if: steps.cache-wheels.outputs.cache-hit != 'true' | |
| run: | | |
| pkg-config --libs --cflags lapack || true | |
| shell: alpine.sh {0} | |
| - name: Build wheel for pyshtools | |
| if: steps.cache-wheels.outputs.cache-hit != 'true' | |
| run: | | |
| git clone https://github.com/FlorianPfaff/SHTOOLS.git | |
| cd SHTOOLS | |
| git checkout meson | |
| python -m build | |
| cd .. | |
| mv SHTOOLS/dist/*.whl ./alpine-wheels/ | |
| rm -rf SHTOOLS | |
| shell: alpine.sh {0} | |
| - name: Install required packages and dependencies | |
| if: steps.cache-wheels.outputs.cache-hit != 'true' | |
| run: python -m pip install --find-links=./alpine-wheels -r requirements-dev_no_version.txt | |
| shell: alpine.sh {0} | |
| - name: Print requirements-dev_no_version.txt | |
| if: steps.cache-wheels.outputs.cache-hit != 'true' | |
| run: cat requirements-dev_no_version.txt | |
| shell: alpine.sh {0} | |
| - name: Freeze requirements | |
| if: steps.cache-wheels.outputs.cache-hit != 'true' | |
| run: python -m pip freeze > requirements-tmp.txt | |
| shell: alpine.sh {0} | |
| - name: Download compatible packages | |
| if: steps.cache-wheels.outputs.cache-hit != 'true' | |
| run: | | |
| python -m pip download --find-links=./alpine-wheels -r requirements-tmp.txt -d ./alpine-wheels | |
| shell: alpine.sh {0} | |
| - name: Build wheels | |
| if: steps.cache-wheels.outputs.cache-hit != 'true' | |
| run: | | |
| cd ./alpine-wheels | |
| for src in *.tar.gz; do | |
| python -m pip wheel "$src" --no-deps --wheel-dir=./ | |
| rm "$src" | |
| done | |
| cd .. | |
| shell: alpine.sh {0} | |
| - name: List available wheels | |
| run: ls -l ./alpine-wheels | |
| - name: Clean up temporary files (in case they are generated) | |
| run: rm -rf myenv CMakeFiles CMakeCache.txt cmake_install.cmake Makefile | |
| # MegaLinter | |
| - name: MegaLinter | |
| id: ml | |
| # You can override MegaLinter flavor used to have faster performances | |
| # More info at https://megalinter.io/latest/configuration/#shared-variables | |
| uses: oxsecurity/megalinter/flavors/[email protected] | |
| env: | |
| # All available variables are described in documentation | |
| # https://megalinter.io/latest/configuration/#shared-variables | |
| # ADD YOUR CUSTOM ENV VARIABLES HERE OR DEFINE THEM IN A FILE .mega-linter.yml AT THE ROOT OF YOUR REPOSITORY | |
| VALIDATE_ALL_CODEBASE: true # ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }} # Validates all source when push on main, else just the git diff with main. Override with true if you always want to lint all sources | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| EMAIL_REPORTER_SMTP_PASSWORD: ${{ secrets.SMTP_PASSWORD }} | |
| # Upload MegaLinter artifacts | |
| - name: Archive production artifacts | |
| if: always() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: MegaLinter reports | |
| path: | | |
| megalinter-reports | |
| mega-linter.log | |
| # Create Pull Request step | |
| - name: Create Pull Request with applied fixes | |
| id: cpr | |
| if: github.ref == 'refs/heads/main' && steps.ml.outputs.has_updated_sources == 1 && (env.APPLY_FIXES_EVENT == 'all' || env.APPLY_FIXES_EVENT == github.event_name) && env.APPLY_FIXES_MODE == 'pull_request' && (github.event_name == 'push' || github.event.pull_request.head.repo.full_name == github.repository) && !contains(github.event.head_commit.message, 'skip fix') | |
| uses: peter-evans/create-pull-request@v5 | |
| with: | |
| token: ${{ secrets.PAT || secrets.GITHUB_TOKEN }} | |
| commit-message: "[MegaLinter] Apply linters automatic fixes" | |
| title: "[MegaLinter] Apply linters automatic fixes" | |
| branch: megalinter-fixes | |
| labels: bot | |
| base: main | |
| # Output PR details | |
| - name: Create PR output | |
| if: github.ref == 'refs/heads/main' && steps.ml.outputs.has_updated_sources == 1 && (env.APPLY_FIXES_EVENT == 'all' || env.APPLY_FIXES_EVENT == github.event_name) && env.APPLY_FIXES_MODE == 'pull_request' && (github.event_name == 'push' || github.event.pull_request.head.repo.full_name == github.repository) && !contains(github.event.head_commit.message, 'skip fix') | |
| run: | | |
| echo "Pull Request Number - ${{ steps.cpr.outputs.pull-request-number }}" | |
| echo "Pull Request URL - ${{ steps.cpr.outputs.pull-request-url }}" | |
| # Push new commit if applicable (for now works only on PR from same repository, not from forks) | |
| - name: Prepare commit | |
| if: steps.ml.outputs.has_updated_sources == 1 && (env.APPLY_FIXES_EVENT == 'all' || env.APPLY_FIXES_EVENT == github.event_name) && env.APPLY_FIXES_MODE == 'commit' && github.ref != 'refs/heads/main' && (github.event_name == 'push' || github.event.pull_request.head.repo.full_name == github.repository) && !contains(github.event.head_commit.message, 'skip fix') | |
| run: sudo chown -Rc $UID .git/ | |
| - name: Commit and push applied linter fixes | |
| if: steps.ml.outputs.has_updated_sources == 1 && (env.APPLY_FIXES_EVENT == 'all' || env.APPLY_FIXES_EVENT == github.event_name) && env.APPLY_FIXES_MODE == 'commit' && github.ref != 'refs/heads/main' && (github.event_name == 'push' || github.event.pull_request.head.repo.full_name == github.repository) && !contains(github.event.head_commit.message, 'skip fix') | |
| uses: stefanzweifel/git-auto-commit-action@v4 | |
| with: | |
| branch: ${{ github.event.pull_request.head.ref || github.head_ref || github.ref }} | |
| commit_message: "[MegaLinter] Apply linters fixes" | |
| commit_user_name: megalinter-bot | |
| commit_user_email: [email protected] |