From a7d1ffe71165dae6704b87c532e65aed74d9d046 Mon Sep 17 00:00:00 2001 From: Markus Bilz Date: Mon, 20 Nov 2023 16:57:15 +0100 Subject: [PATCH] Clean up configuration --- .coveragerc | 21 - .readthedocs.yml | 8 - MANIFEST.in | 1 - doc/Makefile | 184 ---- doc/_static/css/project-template.css | 16 - doc/_static/js/copybutton.js | 63 -- doc/_templates/class.rst | 17 - doc/_templates/function.rst | 12 - doc/_templates/numpydoc_docstring.py | 16 - doc/api.rst | 34 - doc/conf.py | 335 ------- doc/index.rst | 52 -- doc/make.bat | 242 ----- doc/quick_start.rst | 129 --- doc/user_guide.rst | 180 ---- examples/README.txt | 6 - poetry.lock | 1260 -------------------------- pyproject.toml | 75 +- requirements.txt | 114 --- setup.cfg | 8 - 20 files changed, 37 insertions(+), 2736 deletions(-) delete mode 100644 .coveragerc delete mode 100644 .readthedocs.yml delete mode 100644 MANIFEST.in delete mode 100644 doc/Makefile delete mode 100644 doc/_static/css/project-template.css delete mode 100644 doc/_static/js/copybutton.js delete mode 100644 doc/_templates/class.rst delete mode 100644 doc/_templates/function.rst delete mode 100644 doc/_templates/numpydoc_docstring.py delete mode 100644 doc/api.rst delete mode 100644 doc/conf.py delete mode 100644 doc/index.rst delete mode 100644 doc/make.bat delete mode 100644 doc/quick_start.rst delete mode 100644 doc/user_guide.rst delete mode 100644 examples/README.txt delete mode 100644 poetry.lock delete mode 100644 requirements.txt delete mode 100644 setup.cfg diff --git a/.coveragerc b/.coveragerc deleted file mode 100644 index 73d0a06..0000000 --- a/.coveragerc +++ /dev/null @@ -1,21 +0,0 @@ -# Configuration for coverage.py - -[run] -branch = True -source = tclf -include = */tclf/* -omit = - */setup.py - -[report] -exclude_lines = - pragma: no cover - def __repr__ - if self.debug: - if settings.DEBUG - raise AssertionError - raise NotImplementedError - if 0: - if __name__ == .__main__.: - if self.verbose: -show_missing = True diff --git a/.readthedocs.yml b/.readthedocs.yml deleted file mode 100644 index 228fc8a..0000000 --- a/.readthedocs.yml +++ /dev/null @@ -1,8 +0,0 @@ -formats: - - none -requirements_file: requirements.txt -python: - pip_install: true - extra_requirements: - - tests - - docs diff --git a/MANIFEST.in b/MANIFEST.in deleted file mode 100644 index f9bd145..0000000 --- a/MANIFEST.in +++ /dev/null @@ -1 +0,0 @@ -include requirements.txt diff --git a/doc/Makefile b/doc/Makefile deleted file mode 100644 index 508376e..0000000 --- a/doc/Makefile +++ /dev/null @@ -1,184 +0,0 @@ -# Makefile for Sphinx documentation -# - -# You can set these variables from the command line. -SPHINXOPTS = -SPHINXBUILD = sphinx-build -PAPER = -BUILDDIR = _build - -# User-friendly check for sphinx-build -ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $$?), 1) -$(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from http://sphinx-doc.org/) -endif - -# Internal variables. -PAPEROPT_a4 = -D latex_paper_size=a4 -PAPEROPT_letter = -D latex_paper_size=letter -ALLSPHINXOPTS = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) . -# the i18n builder cannot share the environment and doctrees with the others -I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) . - -.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext - -help: - @echo "Please use \`make ' where is one of" - @echo " html to make standalone HTML files" - @echo " dirhtml to make HTML files named index.html in directories" - @echo " singlehtml to make a single large HTML file" - @echo " pickle to make pickle files" - @echo " json to make JSON files" - @echo " htmlhelp to make HTML files and a HTML help project" - @echo " qthelp to make HTML files and a qthelp project" - @echo " devhelp to make HTML files and a Devhelp project" - @echo " epub to make an epub" - @echo " latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter" - @echo " latexpdf to make LaTeX files and run them through pdflatex" - @echo " latexpdfja to make LaTeX files and run them through platex/dvipdfmx" - @echo " text to make text files" - @echo " man to make manual pages" - @echo " texinfo to make Texinfo files" - @echo " info to make Texinfo files and run them through makeinfo" - @echo " gettext to make PO message catalogs" - @echo " changes to make an overview of all changed/added/deprecated items" - @echo " xml to make Docutils-native XML files" - @echo " pseudoxml to make pseudoxml-XML files for display purposes" - @echo " linkcheck to check all external links for integrity" - @echo " doctest to run all doctests embedded in the documentation (if enabled)" - -clean: - -rm -rf $(BUILDDIR)/* - -rm -rf auto_examples/ - -rm -rf generated/* - -rm -rf modules/generated/* - -html: - # These two lines make the build a bit more lengthy, and the - # the embedding of images more robust - rm -rf $(BUILDDIR)/html/_images - #rm -rf _build/doctrees/ - $(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html - @echo - @echo "Build finished. The HTML pages are in $(BUILDDIR)/html." - -dirhtml: - $(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml - @echo - @echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml." - -singlehtml: - $(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml - @echo - @echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml." - -pickle: - $(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle - @echo - @echo "Build finished; now you can process the pickle files." - -json: - $(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json - @echo - @echo "Build finished; now you can process the JSON files." - -htmlhelp: - $(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp - @echo - @echo "Build finished; now you can run HTML Help Workshop with the" \ - ".hhp project file in $(BUILDDIR)/htmlhelp." - -qthelp: - $(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp - @echo - @echo "Build finished; now you can run "qcollectiongenerator" with the" \ - ".qhcp project file in $(BUILDDIR)/qthelp, like this:" - @echo "# qcollectiongenerator $(BUILDDIR)/qthelp/project-template.qhcp" - @echo "To view the help file:" - @echo "# assistant -collectionFile $(BUILDDIR)/qthelp/project-template.qhc" - -devhelp: - $(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp - @echo - @echo "Build finished." - @echo "To view the help file:" - @echo "# mkdir -p $$HOME/.local/share/devhelp/project-template" - @echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/project-template" - @echo "# devhelp" - -epub: - $(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub - @echo - @echo "Build finished. The epub file is in $(BUILDDIR)/epub." - -latex: - $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex - @echo - @echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex." - @echo "Run \`make' in that directory to run these through (pdf)latex" \ - "(use \`make latexpdf' here to do that automatically)." - -latexpdf: - $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex - @echo "Running LaTeX files through pdflatex..." - $(MAKE) -C $(BUILDDIR)/latex all-pdf - @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex." - -latexpdfja: - $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex - @echo "Running LaTeX files through platex and dvipdfmx..." - $(MAKE) -C $(BUILDDIR)/latex all-pdf-ja - @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex." - -text: - $(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text - @echo - @echo "Build finished. The text files are in $(BUILDDIR)/text." - -man: - $(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man - @echo - @echo "Build finished. The manual pages are in $(BUILDDIR)/man." - -texinfo: - $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo - @echo - @echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo." - @echo "Run \`make' in that directory to run these through makeinfo" \ - "(use \`make info' here to do that automatically)." - -info: - $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo - @echo "Running Texinfo files through makeinfo..." - make -C $(BUILDDIR)/texinfo info - @echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo." - -gettext: - $(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale - @echo - @echo "Build finished. The message catalogs are in $(BUILDDIR)/locale." - -changes: - $(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes - @echo - @echo "The overview file is in $(BUILDDIR)/changes." - -linkcheck: - $(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck - @echo - @echo "Link check complete; look for any errors in the above output " \ - "or in $(BUILDDIR)/linkcheck/output.txt." - -doctest: - $(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest - @echo "Testing of doctests in the sources finished, look at the " \ - "results in $(BUILDDIR)/doctest/output.txt." - -xml: - $(SPHINXBUILD) -b xml $(ALLSPHINXOPTS) $(BUILDDIR)/xml - @echo - @echo "Build finished. The XML files are in $(BUILDDIR)/xml." - -pseudoxml: - $(SPHINXBUILD) -b pseudoxml $(ALLSPHINXOPTS) $(BUILDDIR)/pseudoxml - @echo - @echo "Build finished. The pseudo-XML files are in $(BUILDDIR)/pseudoxml." diff --git a/doc/_static/css/project-template.css b/doc/_static/css/project-template.css deleted file mode 100644 index f6caff2..0000000 --- a/doc/_static/css/project-template.css +++ /dev/null @@ -1,16 +0,0 @@ -@import url("theme.css"); - -.highlight a { - text-decoration: underline; -} - -.deprecated p { - padding: 10px 7px 10px 10px; - color: #b94a48; - background-color: #F3E5E5; - border: 1px solid #eed3d7; -} - -.deprecated p span.versionmodified { - font-weight: bold; -} diff --git a/doc/_static/js/copybutton.js b/doc/_static/js/copybutton.js deleted file mode 100644 index d87f569..0000000 --- a/doc/_static/js/copybutton.js +++ /dev/null @@ -1,63 +0,0 @@ -$(document).ready(function() { - /* Add a [>>>] button on the top-right corner of code samples to hide - * the >>> and ... prompts and the output and thus make the code - * copyable. */ - var div = $('.highlight-python .highlight,' + - '.highlight-python3 .highlight,' + - '.highlight-pycon .highlight,' + - '.highlight-default .highlight') - var pre = div.find('pre'); - - // get the styles from the current theme - pre.parent().parent().css('position', 'relative'); - var hide_text = 'Hide the prompts and output'; - var show_text = 'Show the prompts and output'; - var border_width = pre.css('border-top-width'); - var border_style = pre.css('border-top-style'); - var border_color = pre.css('border-top-color'); - var button_styles = { - 'cursor':'pointer', 'position': 'absolute', 'top': '0', 'right': '0', - 'border-color': border_color, 'border-style': border_style, - 'border-width': border_width, 'color': border_color, 'text-size': '75%', - 'font-family': 'monospace', 'padding-left': '0.2em', 'padding-right': '0.2em', - 'border-radius': '0 3px 0 0' - } - - // create and add the button to all the code blocks that contain >>> - div.each(function(index) { - var jthis = $(this); - if (jthis.find('.gp').length > 0) { - var button = $('>>>'); - button.css(button_styles) - button.attr('title', hide_text); - button.data('hidden', 'false'); - jthis.prepend(button); - } - // tracebacks (.gt) contain bare text elements that need to be - // wrapped in a span to work with .nextUntil() (see later) - jthis.find('pre:has(.gt)').contents().filter(function() { - return ((this.nodeType == 3) && (this.data.trim().length > 0)); - }).wrap(''); - }); - - // define the behavior of the button when it's clicked - $('.copybutton').click(function(e){ - e.preventDefault(); - var button = $(this); - if (button.data('hidden') === 'false') { - // hide the code output - button.parent().find('.go, .gp, .gt').hide(); - button.next('pre').find('.gt').nextUntil('.gp, .go').css('visibility', 'hidden'); - button.css('text-decoration', 'line-through'); - button.attr('title', show_text); - button.data('hidden', 'true'); - } else { - // show the code output - button.parent().find('.go, .gp, .gt').show(); - button.next('pre').find('.gt').nextUntil('.gp, .go').css('visibility', 'visible'); - button.css('text-decoration', 'none'); - button.attr('title', hide_text); - button.data('hidden', 'false'); - } - }); -}); diff --git a/doc/_templates/class.rst b/doc/_templates/class.rst deleted file mode 100644 index 30c38f6..0000000 --- a/doc/_templates/class.rst +++ /dev/null @@ -1,17 +0,0 @@ -:mod:`{{module}}`.{{objname}} -{{ underline }}============== - -.. currentmodule:: {{ module }} - -.. autoclass:: {{ objname }} - :members: - - {% block methods %} - .. automethod:: __init__ - {% endblock %} - -.. include:: {{module}}.{{objname}}.examples - -.. raw:: html - -
diff --git a/doc/_templates/function.rst b/doc/_templates/function.rst deleted file mode 100644 index 4ba355d..0000000 --- a/doc/_templates/function.rst +++ /dev/null @@ -1,12 +0,0 @@ -:mod:`{{module}}`.{{objname}} -{{ underline }}==================== - -.. currentmodule:: {{ module }} - -.. autofunction:: {{ objname }} - -.. include:: {{module}}.{{objname}}.examples - -.. raw:: html - -
diff --git a/doc/_templates/numpydoc_docstring.py b/doc/_templates/numpydoc_docstring.py deleted file mode 100644 index fd6a35f..0000000 --- a/doc/_templates/numpydoc_docstring.py +++ /dev/null @@ -1,16 +0,0 @@ -{{index}} -{{summary}} -{{extended_summary}} -{{parameters}} -{{returns}} -{{yields}} -{{other_parameters}} -{{attributes}} -{{raises}} -{{warns}} -{{warnings}} -{{see_also}} -{{notes}} -{{references}} -{{examples}} -{{methods}} diff --git a/doc/api.rst b/doc/api.rst deleted file mode 100644 index 769803c..0000000 --- a/doc/api.rst +++ /dev/null @@ -1,34 +0,0 @@ -#################### -project-template API -#################### - -This is an example on how to document the API of your own project. - -.. currentmodule:: tclf - -Estimator -========= - -.. autosummary:: - :toctree: generated/ - :template: class.rst - - TemplateEstimator - -Transformer -=========== - -.. autosummary:: - :toctree: generated/ - :template: class.rst - - TemplateTransformer - -Predictor -========= - -.. autosummary:: - :toctree: generated/ - :template: class.rst - - TemplateClassifier diff --git a/doc/conf.py b/doc/conf.py deleted file mode 100644 index 705ebb5..0000000 --- a/doc/conf.py +++ /dev/null @@ -1,335 +0,0 @@ -# -# project-template documentation build configuration file, created by -# sphinx-quickstart on Mon Jan 18 14:44:12 2016. -# -# This file is execfile()d with the current directory set to its -# containing dir. -# -# Note that not all possible configuration values are present in this -# autogenerated file. -# -# All configuration values have a default; values that are commented out -# serve to show the default. - -import os -import sys - -import furo - -# Add to sys.path the top-level directory where the package is located. -sys.path.insert(0, os.path.abspath("..")) - -# If extensions (or modules to document with autodoc) are in another directory, -# add these directories to sys.path here. If the directory is relative to the -# documentation root, use os.path.abspath to make it absolute, like shown here. -# sys.path.insert(0, os.path.abspath('.')) - -# -- General configuration ------------------------------------------------ - -# If your documentation needs a minimal Sphinx version, state it here. -# needs_sphinx = '1.0' - -# Add any Sphinx extension module names here, as strings. They can be -# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom -# ones. -extensions = [ - "sphinx.ext.autodoc", - "sphinx.ext.autosummary", - "sphinx.ext.doctest", - "sphinx.ext.intersphinx", - "sphinx.ext.viewcode", - "numpydoc", - "sphinx_gallery.gen_gallery", - "myst_parser", -] - -# this is needed for some reason... -# see https://github.com/numpy/numpydoc/issues/69 -numpydoc_show_class_members = False - -from distutils.version import LooseVersion - -# pngmath / imgmath compatibility layer for different sphinx versions -import sphinx - -if LooseVersion(sphinx.__version__) < LooseVersion("1.4"): - extensions.append("sphinx.ext.pngmath") -else: - extensions.append("sphinx.ext.imgmath") - -autodoc_default_flags = ["members", "inherited-members"] - -# Add any paths that contain templates here, relative to this directory. -templates_path = ["_templates"] - -# generate autosummary even if no references -autosummary_generate = True - -# The suffix of source filenames. -source_suffix = ['.rst', '.md'] - -# The encoding of source files. -# source_encoding = 'utf-8-sig' - -# Generate the plots for the gallery -plot_gallery = True - -# The master toctree document. -master_doc = "index" - -# General information about the project. -project = "tclf" -copyright = "2016, Vighnesh Birodkar" - -# The version info for the project you're documenting, acts as replacement for -# |version| and |release|, also used in various other places throughout the -# built documents. -# -# The short X.Y version. -from tclf import __version__ - -version = __version__ -# The full version, including alpha/beta/rc tags. -release = __version__ - -# The language for content autogenerated by Sphinx. Refer to documentation -# for a list of supported languages. -# language = None - -# There are two options for replacing |today|: either, you set today to some -# non-false value, then it is used: -# today = '' -# Else, today_fmt is used as the format for a strftime call. -# today_fmt = '%B %d, %Y' - -# List of patterns, relative to source directory, that match files and -# directories to ignore when looking for source files. -exclude_patterns = ["_build", "_templates"] - -# The reST default role (used for this markup: `text`) to use for all -# documents. -# default_role = None - -# If true, '()' will be appended to :func: etc. cross-reference text. -# add_function_parentheses = True - -# If true, the current module name will be prepended to all description -# unit titles (such as .. function::). -# add_module_names = True - -# If true, sectionauthor and moduleauthor directives will be shown in the -# output. They are ignored by default. -# show_authors = False - -# The name of the Pygments (syntax highlighting) style to use. -pygments_style = "sphinx" - -# Custom style -# html_style = "css/project-template.css" - -# A list of ignored prefixes for module index sorting. -# modindex_common_prefix = [] - -# If true, keep warnings as "system message" paragraphs in the built documents. -# keep_warnings = False - - -# -- Options for HTML output ---------------------------------------------- - -# The theme to use for HTML and HTML Help pages. See the documentation for -# a list of builtin themes. -html_theme = "furo" - -# Theme options are theme-specific and customize the look and feel of a theme -# further. For a list of options available for each theme, see the -# documentation. -# html_theme_options = {} - -# Add any paths that contain custom themes here, relative to this directory. -# html_theme_path = [furo.get_html_theme_path()] - -# The name for this set of Sphinx documents. If None, it defaults to -# " v documentation". -# html_title = None - -# A shorter title for the navigation bar. Default is the same as html_title. -# html_short_title = None - -# The name of an image file (relative to this directory) to place at the top -# of the sidebar. -# html_logo = None - -# The name of an image file (within the static path) to use as favicon of the -# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 -# pixels large. -# html_favicon = None - -# Add any paths that contain custom static files (such as style sheets) here, -# relative to this directory. They are copied after the builtin static files, -# so a file named "default.css" will overwrite the builtin "default.css". -html_static_path = ["_static"] - -# Add any extra paths that contain custom files (such as robots.txt or -# .htaccess) here, relative to this directory. These files are copied -# directly to the root of the documentation. -# html_extra_path = [] - -# If not '', a 'Last updated on:' timestamp is inserted at every page bottom, -# using the given strftime format. -# html_last_updated_fmt = '%b %d, %Y' - -# If true, SmartyPants will be used to convert quotes and dashes to -# typographically correct entities. -# html_use_smartypants = True - -# Custom sidebar templates, maps document names to template names. -# html_sidebars = {} - -# Additional templates that should be rendered to pages, maps page names to -# template names. -# html_additional_pages = {} - -# If false, no module index is generated. -# html_domain_indices = True - -# If false, no index is generated. -# html_use_index = True - -# If true, the index is split into individual pages for each letter. -# html_split_index = False - -# If true, links to the reST sources are added to the pages. -# html_show_sourcelink = True - -# If true, "Created using Sphinx" is shown in the HTML footer. Default is True. -# html_show_sphinx = True - -# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. -# html_show_copyright = True - -# If true, an OpenSearch description file will be output, and all pages will -# contain a tag referring to it. The value of this option must be the -# base URL from which the finished HTML is served. -# html_use_opensearch = '' - -# This is the file name suffix for HTML files (e.g. ".xhtml"). -# html_file_suffix = None - -# Output file base name for HTML help builder. -htmlhelp_basename = "project-templatedoc" - - -# -- Options for LaTeX output --------------------------------------------- - -latex_elements = { - # The paper size ('letterpaper' or 'a4paper'). - #'papersize': 'letterpaper', - # The font size ('10pt', '11pt' or '12pt'). - #'pointsize': '10pt', - # Additional stuff for the LaTeX preamble. - #'preamble': '', -} - -# Grouping the document tree into LaTeX files. List of tuples -# (source start file, target name, title, -# author, documentclass [howto, manual, or own class]). -latex_documents = [ - ( - "index", - "project-template.tex", - "project-template Documentation", - "Vighnesh Birodkar", - "manual", - ), -] - -# The name of an image file (relative to this directory) to place at the top of -# the title page. -# latex_logo = None - -# For "manual" documents, if this is true, then toplevel headings are parts, -# not chapters. -# latex_use_parts = False - -# If true, show page references after internal links. -# latex_show_pagerefs = False - -# If true, show URL addresses after external links. -# latex_show_urls = False - -# Documents to append as an appendix to all manuals. -# latex_appendices = [] - -# If false, no module index is generated. -# latex_domain_indices = True - - -# -- Options for manual page output --------------------------------------- - -# One entry per manual page. List of tuples -# (source start file, name, description, authors, manual section). -man_pages = [ - ( - "index", - "project-template", - "project-template Documentation", - ["Vighnesh Birodkar"], - 1, - ) -] - -# If true, show URL addresses after external links. -# man_show_urls = False - - -# -- Options for Texinfo output ------------------------------------------- - -# Grouping the document tree into Texinfo files. List of tuples -# (source start file, target name, title, author, -# dir menu entry, description, category) -texinfo_documents = [ - ( - "index", - "project-template", - "project-template Documentation", - "Vighnesh Birodkar", - "project-template", - "One line description of project.", - "Miscellaneous", - ), -] - -# Documents to append as an appendix to all manuals. -# texinfo_appendices = [] - -# If false, no module index is generated. -# texinfo_domain_indices = True - -# How to display URL addresses: 'footnote', 'no', or 'inline'. -# texinfo_show_urls = 'footnote' - -# If true, do not generate a @detailmenu in the "Top" node's menu. -# texinfo_no_detailmenu = False - - -# Example configuration for intersphinx: refer to the Python standard library. -# intersphinx configuration -intersphinx_mapping = { - "python": ("https://docs.python.org/{.major}".format(sys.version_info), None), - "numpy": ("https://docs.scipy.org/doc/numpy/", None), - "scipy": ("https://docs.scipy.org/doc/scipy/reference", None), - "matplotlib": ("https://matplotlib.org/", None), - "sklearn": ("http://scikit-learn.org/stable", None), -} - -# sphinx-gallery configuration -sphinx_gallery_conf = { - "doc_module": "tclf", - "backreferences_dir": os.path.join("generated"), - "reference_url": {"tclf": None}, -} - - -def setup(app): - # a copy button to copy snippet of code from the documentation - app.add_js_file("js/copybutton.js") diff --git a/doc/index.rst b/doc/index.rst deleted file mode 100644 index 8d88a5e..0000000 --- a/doc/index.rst +++ /dev/null @@ -1,52 +0,0 @@ -.. project-template documentation master file, created by - sphinx-quickstart on Mon Jan 18 14:44:12 2016. - You can adapt this file completely to your liking, but it should at least - contain the root `toctree` directive. - -Welcome to tclf's documentation! -============================================ - -This project is a reference implementation to anyone who wishes to develop -scikit-learn compatible classes. - -.. toctree:: - :maxdepth: 2 - :hidden: - :caption: Getting Started - - quick_start - -.. toctree:: - :maxdepth: 2 - :hidden: - :caption: Documentation - - user_guide - api - -.. toctree:: - :maxdepth: 2 - :hidden: - :caption: Tutorial - Examples - - auto_examples/index - -`Getting started `_ -------------------------------------- - -Information regarding this template and how to modify it for your own project. - -`User Guide `_ -------------------------------- - -An example of narrative documentation. - -`API Documentation `_ -------------------------------- - -An example of API documentation. - -`Examples `_ --------------------------------------- - -A set of examples. It complements the `User Guide `_. diff --git a/doc/make.bat b/doc/make.bat deleted file mode 100644 index 79c1e19..0000000 --- a/doc/make.bat +++ /dev/null @@ -1,242 +0,0 @@ -@ECHO OFF - -REM Command file for Sphinx documentation - -if "%SPHINXBUILD%" == "" ( - set SPHINXBUILD=sphinx-build -) -set BUILDDIR=_build -set ALLSPHINXOPTS=-d %BUILDDIR%/doctrees %SPHINXOPTS% . -set I18NSPHINXOPTS=%SPHINXOPTS% . -if NOT "%PAPER%" == "" ( - set ALLSPHINXOPTS=-D latex_paper_size=%PAPER% %ALLSPHINXOPTS% - set I18NSPHINXOPTS=-D latex_paper_size=%PAPER% %I18NSPHINXOPTS% -) - -if "%1" == "" goto help - -if "%1" == "help" ( - :help - echo.Please use `make ^` where ^ is one of - echo. html to make standalone HTML files - echo. dirhtml to make HTML files named index.html in directories - echo. singlehtml to make a single large HTML file - echo. pickle to make pickle files - echo. json to make JSON files - echo. htmlhelp to make HTML files and a HTML help project - echo. qthelp to make HTML files and a qthelp project - echo. devhelp to make HTML files and a Devhelp project - echo. epub to make an epub - echo. latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter - echo. text to make text files - echo. man to make manual pages - echo. texinfo to make Texinfo files - echo. gettext to make PO message catalogs - echo. changes to make an overview over all changed/added/deprecated items - echo. xml to make Docutils-native XML files - echo. pseudoxml to make pseudoxml-XML files for display purposes - echo. linkcheck to check all external links for integrity - echo. doctest to run all doctests embedded in the documentation if enabled - goto end -) - -if "%1" == "clean" ( - for /d %%i in (%BUILDDIR%\*) do rmdir /q /s %%i - del /q /s %BUILDDIR%\* - goto end -) - - -%SPHINXBUILD% 2> nul -if errorlevel 9009 ( - echo. - echo.The 'sphinx-build' command was not found. Make sure you have Sphinx - echo.installed, then set the SPHINXBUILD environment variable to point - echo.to the full path of the 'sphinx-build' executable. Alternatively you - echo.may add the Sphinx directory to PATH. - echo. - echo.If you don't have Sphinx installed, grab it from - echo.http://sphinx-doc.org/ - exit /b 1 -) - -if "%1" == "html" ( - %SPHINXBUILD% -b html %ALLSPHINXOPTS% %BUILDDIR%/html - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The HTML pages are in %BUILDDIR%/html. - goto end -) - -if "%1" == "dirhtml" ( - %SPHINXBUILD% -b dirhtml %ALLSPHINXOPTS% %BUILDDIR%/dirhtml - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The HTML pages are in %BUILDDIR%/dirhtml. - goto end -) - -if "%1" == "singlehtml" ( - %SPHINXBUILD% -b singlehtml %ALLSPHINXOPTS% %BUILDDIR%/singlehtml - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The HTML pages are in %BUILDDIR%/singlehtml. - goto end -) - -if "%1" == "pickle" ( - %SPHINXBUILD% -b pickle %ALLSPHINXOPTS% %BUILDDIR%/pickle - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; now you can process the pickle files. - goto end -) - -if "%1" == "json" ( - %SPHINXBUILD% -b json %ALLSPHINXOPTS% %BUILDDIR%/json - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; now you can process the JSON files. - goto end -) - -if "%1" == "htmlhelp" ( - %SPHINXBUILD% -b htmlhelp %ALLSPHINXOPTS% %BUILDDIR%/htmlhelp - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; now you can run HTML Help Workshop with the ^ -.hhp project file in %BUILDDIR%/htmlhelp. - goto end -) - -if "%1" == "qthelp" ( - %SPHINXBUILD% -b qthelp %ALLSPHINXOPTS% %BUILDDIR%/qthelp - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; now you can run "qcollectiongenerator" with the ^ -.qhcp project file in %BUILDDIR%/qthelp, like this: - echo.^> qcollectiongenerator %BUILDDIR%\qthelp\project-template.qhcp - echo.To view the help file: - echo.^> assistant -collectionFile %BUILDDIR%\qthelp\project-template.ghc - goto end -) - -if "%1" == "devhelp" ( - %SPHINXBUILD% -b devhelp %ALLSPHINXOPTS% %BUILDDIR%/devhelp - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. - goto end -) - -if "%1" == "epub" ( - %SPHINXBUILD% -b epub %ALLSPHINXOPTS% %BUILDDIR%/epub - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The epub file is in %BUILDDIR%/epub. - goto end -) - -if "%1" == "latex" ( - %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; the LaTeX files are in %BUILDDIR%/latex. - goto end -) - -if "%1" == "latexpdf" ( - %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex - cd %BUILDDIR%/latex - make all-pdf - cd %BUILDDIR%/.. - echo. - echo.Build finished; the PDF files are in %BUILDDIR%/latex. - goto end -) - -if "%1" == "latexpdfja" ( - %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex - cd %BUILDDIR%/latex - make all-pdf-ja - cd %BUILDDIR%/.. - echo. - echo.Build finished; the PDF files are in %BUILDDIR%/latex. - goto end -) - -if "%1" == "text" ( - %SPHINXBUILD% -b text %ALLSPHINXOPTS% %BUILDDIR%/text - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The text files are in %BUILDDIR%/text. - goto end -) - -if "%1" == "man" ( - %SPHINXBUILD% -b man %ALLSPHINXOPTS% %BUILDDIR%/man - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The manual pages are in %BUILDDIR%/man. - goto end -) - -if "%1" == "texinfo" ( - %SPHINXBUILD% -b texinfo %ALLSPHINXOPTS% %BUILDDIR%/texinfo - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The Texinfo files are in %BUILDDIR%/texinfo. - goto end -) - -if "%1" == "gettext" ( - %SPHINXBUILD% -b gettext %I18NSPHINXOPTS% %BUILDDIR%/locale - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The message catalogs are in %BUILDDIR%/locale. - goto end -) - -if "%1" == "changes" ( - %SPHINXBUILD% -b changes %ALLSPHINXOPTS% %BUILDDIR%/changes - if errorlevel 1 exit /b 1 - echo. - echo.The overview file is in %BUILDDIR%/changes. - goto end -) - -if "%1" == "linkcheck" ( - %SPHINXBUILD% -b linkcheck %ALLSPHINXOPTS% %BUILDDIR%/linkcheck - if errorlevel 1 exit /b 1 - echo. - echo.Link check complete; look for any errors in the above output ^ -or in %BUILDDIR%/linkcheck/output.txt. - goto end -) - -if "%1" == "doctest" ( - %SPHINXBUILD% -b doctest %ALLSPHINXOPTS% %BUILDDIR%/doctest - if errorlevel 1 exit /b 1 - echo. - echo.Testing of doctests in the sources finished, look at the ^ -results in %BUILDDIR%/doctest/output.txt. - goto end -) - -if "%1" == "xml" ( - %SPHINXBUILD% -b xml %ALLSPHINXOPTS% %BUILDDIR%/xml - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The XML files are in %BUILDDIR%/xml. - goto end -) - -if "%1" == "pseudoxml" ( - %SPHINXBUILD% -b pseudoxml %ALLSPHINXOPTS% %BUILDDIR%/pseudoxml - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The pseudo-XML files are in %BUILDDIR%/pseudoxml. - goto end -) - -:end diff --git a/doc/quick_start.rst b/doc/quick_start.rst deleted file mode 100644 index 5910d7c..0000000 --- a/doc/quick_start.rst +++ /dev/null @@ -1,129 +0,0 @@ -##################################### -Quick Start with the project-template -##################################### - -This package serves as a skeleton package aiding at developing compatible -scikit-learn contribution. - -Creating your own scikit-learn contribution package -=================================================== - -1. Download and setup your repository -------------------------------------- - -To create your package, you need to clone the ``project-template`` repository:: - - $ git clone https://github.com/scikit-learn-contrib/project-template.git - -Before to reinitialize your git repository, you need to make the following -changes. Replace all occurrences of ``tclf`` and ``tclf`` -with the name of you own contribution. You can find all the occurrences using -the following command:: - - $ git grep tclf - $ git grep tclf - -To remove the history of the template package, you need to remove the `.git` -directory:: - - $ cd project-template - $ rm -rf .git - -Then, you need to initialize your new git repository:: - - $ git init - $ git add . - $ git commit -m 'Initial commit' - -Finally, you create an online repository on GitHub and push your code online:: - - $ git remote add origin https://github.com/your_remote/your_contribution.git - $ git push origin master - -2. Develop your own scikit-learn estimators -------------------------------------------- - -.. _check_estimator: http://scikit-learn.org/stable/modules/generated/sklearn.utils.estimator_checks.check_estimator.html#sklearn.utils.estimator_checks.check_estimator -.. _`Contributor's Guide`: http://scikit-learn.org/stable/developers/ -.. _PEP8: https://www.python.org/dev/peps/pep-0008/ -.. _PEP257: https://www.python.org/dev/peps/pep-0257/ -.. _NumPyDoc: https://github.com/numpy/numpydoc -.. _doctests: https://docs.python.org/3/library/doctest.html - -You can modify the source files as you want. However, your custom estimators -need to pass the check_estimator_ test to be scikit-learn compatible. You can -refer to the :ref:`User Guide ` to help you create a compatible -scikit-learn estimator. - -In any case, developers should endeavor to adhere to scikit-learn's -`Contributor's Guide`_ which promotes the use of: - -* algorithm-specific unit tests, in addition to ``check_estimator``'s common - tests; -* PEP8_-compliant code; -* a clearly documented API using NumpyDoc_ and PEP257_-compliant docstrings; -* references to relevant scientific literature in standard citation formats; -* doctests_ to provide succinct usage examples; -* standalone examples to illustrate the usage, model visualisation, and - benefits/benchmarks of particular algorithms; -* efficient code when the need for optimization is supported by benchmarks. - -3. Edit the documentation -------------------------- - -.. _Sphinx: http://www.sphinx-doc.org/en/stable/ - -The documentation is created using Sphinx_. In addition, the examples are -created using ``sphinx-gallery``. Therefore, to generate locally the -documentation, you are required to install the following packages:: - - $ pip install sphinx sphinx-gallery sphinx_rtd_theme matplotlib numpydoc pillow - -The documentation is made of: - -* a home page, ``doc/index.rst``; -* an API documentation, ``doc/api.rst`` in which you should add all public - objects for which the docstring should be exposed publicly. -* a User Guide documentation, ``doc/user_guide.rst``, containing the narrative - documentation of your package, to give as much intuition as possible to your - users. -* examples which are created in the `examples/` folder. Each example - illustrates some usage of the package. the example file name should start by - `plot_*.py`. - -The documentation is built with the following commands:: - - $ cd doc - $ make html - -4. Setup the continuous integration ------------------------------------ - -The project template already contains configuration files of the continuous -integration system. Basically, the following systems are set: - -* GitHub Actions is used to test the package in both Linux and Windows. - Refer to the GitHub Actions documentation. -* Circle CI is used to check if the documentation is generated properly. You - need to activate Circle CI for your own repository. Refer to the Circle CI - documentation. -* ReadTheDocs is used to build and host the documentation. You need to activate - ReadTheDocs for your own repository. Refer to the ReadTheDocs documentation. -* CodeCov for tracking the code coverage of the package. You need to activate - CodeCov for you own repository. -* PEP8Speaks for automatically checking the PEP8 compliance of your project for - each Pull Request. - -Publish your package -==================== - -.. _PyPi: https://packaging.python.org/tutorials/packaging-projects/ -.. _conda-foge: https://conda-forge.org/ - -You can make your package available through PyPi_ and conda-forge_. Refer to -the associated documentation to be able to upload your packages such that -it will be installable with ``pip`` and ``conda``. Once published, it will -be possible to install your package with the following commands:: - - $ pip install your-scikit-learn-contribution - $ conda install -c conda-forge your-scikit-learn-contribution diff --git a/doc/user_guide.rst b/doc/user_guide.rst deleted file mode 100644 index 4cceb7f..0000000 --- a/doc/user_guide.rst +++ /dev/null @@ -1,180 +0,0 @@ -.. title:: User guide : contents - -.. _user_guide: - -================================================== -User guide: create your own scikit-learn estimator -================================================== - -Estimator ---------- - -The central piece of transformer, regressor, and classifier is -:class:`sklearn.base.BaseEstimator`. All estimators in scikit-learn are derived -from this class. In more details, this base class enables to set and get -parameters of the estimator. It can be imported as:: - - >>> from sklearn.base import BaseEstimator - -Once imported, you can create a class which inherate from this base class:: - - >>> class MyOwnEstimator(BaseEstimator): - ... pass - -Transformer ------------ - -Transformers are scikit-learn estimators which implement a ``transform`` method. -The use case is the following: - -* at ``fit``, some parameters can be learned from ``X`` and ``y``; -* at ``transform``, `X` will be transformed, using the parameters learned - during ``fit``. - -.. _mixin: https://en.wikipedia.org/wiki/Mixin - -In addition, scikit-learn provides a -mixin_, i.e. :class:`sklearn.base.TransformerMixin`, which -implement the combination of ``fit`` and ``transform`` called ``fit_transform``:: - -One can import the mixin class as:: - - >>> from sklearn.base import TransformerMixin - -Therefore, when creating a transformer, you need to create a class which -inherits from both :class:`sklearn.base.BaseEstimator` and -:class:`sklearn.base.TransformerMixin`. The scikit-learn API imposed ``fit`` to -**return ``self``**. The reason is that it allows to pipeline ``fit`` and -``transform`` imposed by the :class:`sklearn.base.TransformerMixin`. The -``fit`` method is expected to have ``X`` and ``y`` as inputs. Note that -``transform`` takes only ``X`` as input and is expected to return the -transformed version of ``X``:: - - >>> class MyOwnTransformer(BaseEstimator, TransformerMixin): - ... def fit(self, X, y=None): - ... return self - ... def transform(self, X): - ... return X - -We build a basic example to show that our :class:`MyOwnTransformer` is working -within a scikit-learn ``pipeline``:: - - >>> from sklearn.datasets import load_iris - >>> from sklearn.pipeline import make_pipeline - >>> from sklearn.linear_model import LogisticRegression - >>> X, y = load_iris(return_X_y=True) - >>> pipe = make_pipeline(MyOwnTransformer(), - ... LogisticRegression(random_state=10, - ... solver='lbfgs')) - >>> pipe.fit(X, y) # doctest: +ELLIPSIS - Pipeline(...) - >>> pipe.predict(X) # doctest: +ELLIPSIS - array([...]) - -Predictor ---------- - -Regressor -~~~~~~~~~ - -Similarly, regressors are scikit-learn estimators which implement a ``predict`` -method. The use case is the following: - -* at ``fit``, some parameters can be learned from ``X`` and ``y``; -* at ``predict``, predictions will be computed using ``X`` using the parameters - learned during ``fit``. - -In addition, scikit-learn provides a mixin_, i.e. -:class:`sklearn.base.RegressorMixin`, which implements the ``score`` method -which computes the :math:`R^2` score of the predictions. - -One can import the mixin as:: - - >>> from sklearn.base import RegressorMixin - -Therefore, we create a regressor, :class:`MyOwnRegressor` which inherits from -both :class:`sklearn.base.BaseEstimator` and -:class:`sklearn.base.RegressorMixin`. The method ``fit`` gets ``X`` and ``y`` -as input and should return ``self``. It should implement the ``predict`` -function which should output the predictions of your regressor:: - - >>> import numpy as np - >>> class MyOwnRegressor(BaseEstimator, RegressorMixin): - ... def fit(self, X, y): - ... return self - ... def predict(self, X): - ... return np.mean(X, axis=1) - -We illustrate that this regressor is working within a scikit-learn pipeline:: - - >>> from sklearn.datasets import load_diabetes - >>> X, y = load_diabetes(return_X_y=True) - >>> pipe = make_pipeline(MyOwnTransformer(), MyOwnRegressor()) - >>> pipe.fit(X, y) # doctest: +ELLIPSIS - Pipeline(...) - >>> pipe.predict(X) # doctest: +ELLIPSIS - array([...]) - -Since we inherit from the :class:`sklearn.base.RegressorMixin`, we can call -the ``score`` method which will return the :math:`R^2` score:: - - >>> pipe.score(X, y) # doctest: +ELLIPSIS - -3.9... - -Classifier -~~~~~~~~~~ - -Similarly to regressors, classifiers implement ``predict``. In addition, they -output the probabilities of the prediction using the ``predict_proba`` method: - -* at ``fit``, some parameters can be learned from ``X`` and ``y``; -* at ``predict``, predictions will be computed using ``X`` using the parameters - learned during ``fit``. The output corresponds to the predicted class for each sample; -* ``predict_proba`` will give a 2D matrix where each column corresponds to the - class and each entry will be the probability of the associated class. - -In addition, scikit-learn provides a mixin, i.e. -:class:`sklearn.base.ClassifierMixin`, which implements the ``score`` method -which computes the accuracy score of the predictions. - -One can import this mixin as:: - - >>> from sklearn.base import ClassifierMixin - -Therefore, we create a classifier, :class:`MyOwnClassifier` which inherits -from both :class:`slearn.base.BaseEstimator` and -:class:`sklearn.base.ClassifierMixin`. The method ``fit`` gets ``X`` and ``y`` -as input and should return ``self``. It should implement the ``predict`` -function which should output the class inferred by the classifier. -``predict_proba`` will output some probabilities instead:: - - >>> class MyOwnClassifier(BaseEstimator, ClassifierMixin): - ... def fit(self, X, y): - ... self.classes_ = np.unique(y) - ... return self - ... def predict(self, X): - ... return np.random.randint(0, self.classes_.size, - ... size=X.shape[0]) - ... def predict_proba(self, X): - ... pred = np.random.rand(X.shape[0], self.classes_.size) - ... return pred / np.sum(pred, axis=1)[:, np.newaxis] - -We illustrate that this regressor is working within a scikit-learn pipeline:: - - >>> X, y = load_iris(return_X_y=True) - >>> pipe = make_pipeline(MyOwnTransformer(), MyOwnClassifier()) - >>> pipe.fit(X, y) # doctest: +ELLIPSIS - Pipeline(...) - -Then, you can call ``predict`` and ``predict_proba``:: - - >>> pipe.predict(X) # doctest: +ELLIPSIS - array([...]) - >>> pipe.predict_proba(X) # doctest: +ELLIPSIS - array([...]) - -Since our classifier inherits from :class:`sklearn.base.ClassifierMixin`, we -can compute the accuracy by calling the ``score`` method:: - - >>> pipe.score(X, y) # doctest: +ELLIPSIS - 0... diff --git a/examples/README.txt b/examples/README.txt deleted file mode 100644 index a5d244b..0000000 --- a/examples/README.txt +++ /dev/null @@ -1,6 +0,0 @@ -.. _general_examples: - -General examples -================ - -Introductory examples. diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index 96b8aa8..0000000 --- a/poetry.lock +++ /dev/null @@ -1,1260 +0,0 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. - -[[package]] -name = "alabaster" -version = "0.7.13" -description = "A configurable sidebar-enabled Sphinx theme" -optional = false -python-versions = ">=3.6" -files = [ - {file = "alabaster-0.7.13-py3-none-any.whl", hash = "sha256:1ee19aca801bbabb5ba3f5f258e4422dfa86f82f3e9cefb0859b283cdd7f62a3"}, - {file = "alabaster-0.7.13.tar.gz", hash = "sha256:a27a4a084d5e690e16e01e03ad2b2e552c61a65469419b907243193de1a84ae2"}, -] - -[[package]] -name = "babel" -version = "2.12.1" -description = "Internationalization utilities" -optional = false -python-versions = ">=3.7" -files = [ - {file = "Babel-2.12.1-py3-none-any.whl", hash = "sha256:b4246fb7677d3b98f501a39d43396d3cafdc8eadb045f4a31be01863f655c610"}, - {file = "Babel-2.12.1.tar.gz", hash = "sha256:cc2d99999cd01d44420ae725a21c9e3711b3aadc7976d6147f622d8581963455"}, -] - -[[package]] -name = "beautifulsoup4" -version = "4.12.2" -description = "Screen-scraping library" -optional = false -python-versions = ">=3.6.0" -files = [ - {file = "beautifulsoup4-4.12.2-py3-none-any.whl", hash = "sha256:bd2520ca0d9d7d12694a53d44ac482d181b4ec1888909b035a3dbf40d0f57d4a"}, - {file = "beautifulsoup4-4.12.2.tar.gz", hash = "sha256:492bbc69dca35d12daac71c4db1bfff0c876c00ef4a2ffacce226d4638eb72da"}, -] - -[package.dependencies] -soupsieve = ">1.2" - -[package.extras] -html5lib = ["html5lib"] -lxml = ["lxml"] - -[[package]] -name = "certifi" -version = "2023.7.22" -description = "Python package for providing Mozilla's CA Bundle." -optional = false -python-versions = ">=3.6" -files = [ - {file = "certifi-2023.7.22-py3-none-any.whl", hash = "sha256:92d6037539857d8206b8f6ae472e8b77db8058fec5937a1ef3f54304089edbb9"}, - {file = "certifi-2023.7.22.tar.gz", hash = "sha256:539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082"}, -] - -[[package]] -name = "charset-normalizer" -version = "3.2.0" -description = "The Real First Universal Charset Detector. 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-[package.extras] -brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"] -secure = ["certifi", "cryptography (>=1.9)", "idna (>=2.0.0)", "pyopenssl (>=17.1.0)", "urllib3-secure-extra"] -socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"] -zstd = ["zstandard (>=0.18.0)"] - -[metadata] -lock-version = "2.0" -python-versions = "^3.10" -content-hash = "03f567329c304cc773d51862678ed27449171b0e85b0688e2f32f2f647f8cdcc" diff --git a/pyproject.toml b/pyproject.toml index e16f38b..88c8e29 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,7 +1,9 @@ -# https://packaging.python.org/en/latest/tutorials/packaging-projects/ [build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" +requires = ["setuptools"] +build-backend = "setuptools.build_meta" + +[tool.setuptools] +packages = ["tclf"] [project] name = "otc" @@ -20,23 +22,15 @@ classifiers = [ "Operating System :: OS Independent", ] -dynamic = ["version"] - -[project.optional-dependencies] -dev = [ - "autoflake", - "black", - "coverage", - "flake8", - "isort", - "mypy", - "pre-commit", - "pytest", - "pytest-cov", - "sphinx", - "tox", +dependencies = [ + "numpy", + "pandas", + "scikit-learn" ] + +dynamic = ["version"] + [project.urls] "Homepage" = "https://github.com/KarelZe/thesis" "Bug Tracker" = "https://github.com/KarelZe/thesis/issues" @@ -58,26 +52,15 @@ disallow_untyped_defs = true disallow_untyped_calls = true disallow_incomplete_defs = true -[tool.poetry] -name = "tclf" -version = "0.1.0" -description = "Library to perform trade classifcation." -authors = ["Markus Bilz "] -readme = "README.rst" -packages = [{include = "tclf"}] - -[tool.poetry.dependencies] -python = "^3.10" -numpy = "^1.25.1" -pandas = "^2.0.3" -scikit-learn = "^1.3.0" +[project.optional-dependencies] +dev=[ + "build", + "pre-commit", + "pytest", + "pytest-cov", + "ruff", +] -[tool.poetry.group.dev.dependencies] -myst-parser = "^2.0.0" -furo = "^2023.7.26" -numpydoc = "^1.5.0" -sphinx-gallery = "^0.13.0" -matplotlib = "^3.7.2" [tool.pylint.TYPECHECK] # List of members which are set dynamically and missed by Pylint inference @@ -86,7 +69,7 @@ generated-members=["numpy.*", "torch.*"] [tool.pytest.ini_options] minversion = 7.0 -addopts = "-ra -p no:warnings -v --cov --cov-report term-missing" +addopts = "-ra -p no:warnings -v --cov --cov-report term-missing --doctest-modules" pythonpath = ["src"] testpaths = ["tests"] @@ -95,3 +78,19 @@ omit = [ "debug_*.py", "tclf/tests/*", ] +branch = true +source = ["tclf"] +include = ["*/tclf/*"] + +[tool.coverage.report] +exclude_also = [ + "def __repr__", + "if self\\.debug", + "raise AssertionError", + "raise NotImplementedError", + "if 0:", + "if __name__ == .__main__.:", + "@(abc\\.)?abstractmethod", + "if self.verbose:" + ] +show_missing = true diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 0e16aa0..0000000 --- a/requirements.txt +++ /dev/null @@ -1,114 +0,0 @@ -joblib==1.3.1 ; python_version >= "3.10" and python_version < "4.0" \ - 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