From afecddd760da50b1f601d5ba7c716de10e34223e Mon Sep 17 00:00:00 2001
From: shanemckeon <sdm63@pitt.edu>
Date: Fri, 1 Nov 2024 11:25:08 -0400
Subject: [PATCH] updating preproc function- anti

---
 .../coordinates/Analysis_script_CS.m                         | 0
 .../coordinates/convertCoor.m                                | 0
 .../coordinates/electrode2MNI.m                              | 0
 .../coordinates/mni2orFROMxyz.m                              | 0
 Preprocessing_Functions/epochlean.m                          | 2 +-
 Preprocessing_Functions/run_preprocessing_pipeline.m         | 5 +++--
 6 files changed, 4 insertions(+), 3 deletions(-)
 rename {attic/Functions/SNR_processing => EEGcoordinates}/coordinates/Analysis_script_CS.m (100%)
 rename {attic/Functions/SNR_processing => EEGcoordinates}/coordinates/convertCoor.m (100%)
 rename {attic/Functions/SNR_processing => EEGcoordinates}/coordinates/electrode2MNI.m (100%)
 rename {attic/Functions/SNR_processing => EEGcoordinates}/coordinates/mni2orFROMxyz.m (100%)

diff --git a/attic/Functions/SNR_processing/coordinates/Analysis_script_CS.m b/EEGcoordinates/coordinates/Analysis_script_CS.m
similarity index 100%
rename from attic/Functions/SNR_processing/coordinates/Analysis_script_CS.m
rename to EEGcoordinates/coordinates/Analysis_script_CS.m
diff --git a/attic/Functions/SNR_processing/coordinates/convertCoor.m b/EEGcoordinates/coordinates/convertCoor.m
similarity index 100%
rename from attic/Functions/SNR_processing/coordinates/convertCoor.m
rename to EEGcoordinates/coordinates/convertCoor.m
diff --git a/attic/Functions/SNR_processing/coordinates/electrode2MNI.m b/EEGcoordinates/coordinates/electrode2MNI.m
similarity index 100%
rename from attic/Functions/SNR_processing/coordinates/electrode2MNI.m
rename to EEGcoordinates/coordinates/electrode2MNI.m
diff --git a/attic/Functions/SNR_processing/coordinates/mni2orFROMxyz.m b/EEGcoordinates/coordinates/mni2orFROMxyz.m
similarity index 100%
rename from attic/Functions/SNR_processing/coordinates/mni2orFROMxyz.m
rename to EEGcoordinates/coordinates/mni2orFROMxyz.m
diff --git a/Preprocessing_Functions/epochlean.m b/Preprocessing_Functions/epochlean.m
index 35f9c32..eb5e2a9 100755
--- a/Preprocessing_Functions/epochlean.m
+++ b/Preprocessing_Functions/epochlean.m
@@ -40,7 +40,7 @@
 
 elseif task == "anti"
 
-    EEG = pop_epoch( EEG, {'1' '2' '3'}, [0  0.5], 'newname', [currentName '_epochs'], 'epochinfo', 'yes');
+    EEG = pop_epoch( EEG, {'2'}, [-0.1  2], 'newname', [currentName '_epochs'], 'epochinfo', 'yes');
 
 
 end
diff --git a/Preprocessing_Functions/run_preprocessing_pipeline.m b/Preprocessing_Functions/run_preprocessing_pipeline.m
index b389898..ff7a563 100755
--- a/Preprocessing_Functions/run_preprocessing_pipeline.m
+++ b/Preprocessing_Functions/run_preprocessing_pipeline.m
@@ -114,11 +114,12 @@
 
     revisar = {};
     for currentEEG = 1:size(EEGfileNames,1)
+        if currentEEG == 59 || currentEEG == 97 || currentEEG == 115 || currentEEG == 127 || currentEEG == 195 || currentEEG == 284 || currentEEG == 289% skipping error participants for now
+            continue
+        end
         filename = [EEGfileNames(currentEEG).name];
         inputfile = [epoch_path,filename];
         revisar{currentEEG} = epochlean(inputfile,epoch_folder,epoch_rj_marked_folder,task,taskdirectory);
     end
 end
 
-
-