Add mpi_runner_type submit option to executor #1655
Workflow file for this run
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name: libEnsemble-CI | |
on: | |
pull_request: | |
types: | |
- ready_for_review | |
- opened | |
- reopened | |
- synchronize | |
jobs: | |
test-libE: | |
if: '! github.event.pull_request.draft' | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest] | |
mpi-version: [mpich] | |
python-version: [3.8, 3.9, "3.10", "3.11"] | |
comms-type: [m, l] | |
include: | |
- os: macos-latest | |
python-version: 3.9 | |
mpi-version: "mpich=4.0.3" | |
comms-type: m | |
- os: macos-latest | |
python-version: 3.9 | |
mpi-version: "mpich=4.0.3" | |
comms-type: l | |
- os: ubuntu-latest | |
python-version: "3.10" | |
mpi-version: "mpich" | |
comms-type: t | |
# - os: ubuntu-latest | |
# mpi-version: "openmpi" | |
# python-version: "3.10" | |
# comms-type: l | |
# - os: windows-latest | |
# python-version: "3.10" | |
# comms-type: l | |
# mpi-version: "msmpi" | |
# - os: windows-latest | |
# python-version: "3.10" | |
# comms-type: m | |
# mpi-version: "msmpi" | |
env: | |
HYDRA_LAUNCHER: "fork" | |
TERM: xterm-256color | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Setup conda - Python ${{ matrix.python-version }} | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
activate-environment: condaenv | |
miniconda-version: "latest" | |
python-version: ${{ matrix.python-version }} | |
channels: conda-forge | |
channel-priority: flexible | |
auto-update-conda: true | |
- uses: actions/cache/restore@v3 | |
name: Restore cached dependencies | |
id: cache | |
if: matrix.os == 'ubuntu-latest' | |
with: | |
path: | | |
/home/runner/work/libensemble/libensemble/heffte/build/ | |
/home/runner/.local | |
/usr/share/miniconda3/envs/condaenv | |
/usr/share/miniconda3/bin | |
/usr/share/miniconda3/lib | |
/usr/share/miniconda3/include | |
key: libe-${{ github.ref_name }}-${{ matrix.python-version }}-${{ matrix.comms-type }} | |
- name: Force-update certifi | |
run: | | |
python --version | |
pip install -I --upgrade certifi | |
# - name: Windows - Add clang path to $PATH env | |
# shell: bash | |
# if: matrix.os == 'windows-latest' | |
# run: | | |
# echo "PATH=$PATH:C:\msys64\mingw64\bin" >> $GITHUB_ENV | |
# echo "PATH=$PATH:C:\Program Files (x86)\Microsoft Visual Studio 12.0\VC\bin\amd64" >> $GITHUB_ENV | |
- name: Install Ubuntu compilers | |
if: matrix.os == 'ubuntu-latest' | |
run: conda install gcc_linux-64 | |
# Roundabout solution on macos for proper linking with mpicc | |
- name: Install macOS compilers and older SDK | |
if: matrix.os == 'macos-latest' | |
run: | | |
wget https://github.com/phracker/MacOSX-SDKs/releases/download/11.3/MacOSX10.15.sdk.tar.xz | |
mkdir ../sdk; tar xf MacOSX10.15.sdk.tar.xz -C ../sdk | |
conda install clang_osx-64 | |
# - name: Setup MPI (${{ matrix.mpi-version }}) | |
# uses: mpi4py/setup-mpi@v1 | |
# if: matrix.os == 'windows-latest' | |
# with: | |
# mpi: ${{ matrix.mpi-version }} | |
# - name: Install mpi4py on Windows | |
# if: matrix.os == 'windows-latest' | |
# run: pip install mpi4py | |
- name: Install mpi4py and MPI from conda | |
if: matrix.python-version != '3.10' && matrix.os != 'windows-latest' | |
run: | | |
conda install ${{ matrix.mpi-version }} | |
conda install mpi4py | |
- name: Install mpi4py from pip, MPI from conda | |
if: matrix.python-version == '3.10' && matrix.os != 'windows-latest' | |
run: | | |
conda install ${{ matrix.mpi-version }} | |
pip install mpi4py | |
- name: Install generator dependencies | |
if: matrix.os != 'windows-latest' && steps.cache.outputs.cache-hit != 'true' | |
run: | | |
python -m pip install --upgrade pip | |
conda env update --file install/gen_deps_environment.yml | |
pip install ax-platform==0.2.8 | |
- name: Install surmise | |
if: matrix.os != 'macos-latest' && steps.cache.outputs.cache-hit != 'true' | |
run: | | |
pip install --upgrade git+https://github.com/surmising/surmise.git@develop | |
- name: Build ytopt and dependencies | |
if: matrix.python-version != '3.11' && matrix.os != 'windows-latest' && matrix.os != 'macos-latest' | |
run: | | |
pip install scikit-learn==1.1.2 | |
pip install pandas==1.5.3 | |
pip install ConfigSpace | |
pip install "ray[default]" | |
git clone https://github.com/ytopt-team/scikit-optimize.git | |
cd scikit-optimize | |
pip install . | |
cd .. | |
git clone -b version1 https://github.com/ytopt-team/autotune.git | |
cd autotune | |
pip install . | |
cd .. | |
git clone -b main https://github.com/ytopt-team/ytopt.git | |
cd ytopt | |
pip install . | |
cd .. | |
# - name: Install some generator dependencies on Windows | |
# if: matrix.os == 'windows-latest' | |
# run: | | |
# python -m pip install --upgrade pip | |
# conda install nlopt | |
# conda install scipy | |
# pip install mpmath | |
- name: Install generator dependencies for Ubuntu tests | |
if: matrix.os == 'ubuntu-latest' && steps.cache.outputs.cache-hit != 'true' | |
run: | | |
conda install octave | |
sudo apt-get install bc | |
# begin heffte build and dependencies | |
sudo apt install libfftw3-dev | |
git clone https://github.com/icl-utk-edu/heffte.git | |
mkdir heffte/build | |
cd heffte/build | |
pwd | |
cmake -D CMAKE_BUILD_TYPE=Release -D BUILD_SHARED_LIBS=ON -D CMAKE_INSTALL_PREFIX=./ -D Heffte_ENABLE_AVX=ON -D Heffte_ENABLE_FFTW=ON ../ | |
make -j 4 | |
make install | |
cp ./benchmarks/speed3d_c2c ../../libensemble/tests/regression_tests/ | |
# end heffte build and dependencies | |
# pip install dragonfly-opt | |
# pip install git+https://github.com/dragonfly/dragonfly.git | |
pip install git+https://github.com/jlnav/dragonfly.git@fix/remove_npobject | |
pip install scikit-build packaging Tasmanian --user | |
- name: Copy heffte exe on cache-hit | |
if: matrix.os == 'ubuntu-latest' && steps.cache.outputs.cache-hit != 'false' | |
run: | | |
cd /home/runner/work/libensemble/libensemble | |
cp ./heffte/build/benchmarks/speed3d_c2c ./libensemble/tests/regression_tests/ | |
- name: Install other testing dependencies | |
run: | | |
conda install pyzmq | |
pip install -r install/testing_requirements.txt | |
pip install -r install/misc_feature_requirements.txt | |
git clone https://github.com/argonne-lcf/balsam.git | |
sed -i -e "s/pyzmq>=22.1.0,<23.0.0/pyzmq>=23.0.0,<24.0.0/" ./balsam/setup.cfg | |
cd balsam; pip install -e .; cd .. | |
- uses: actions/cache/save@v3 | |
name: Save dependencies to cache | |
if: matrix.os == 'ubuntu-latest' | |
with: | |
path: | | |
/home/runner/work/libensemble/libensemble/heffte/build/ | |
/home/runner/.local | |
/usr/share/miniconda3/envs/condaenv | |
/usr/share/miniconda3/bin | |
/usr/share/miniconda3/lib | |
/usr/share/miniconda3/include | |
key: libe-${{ github.ref_name }}-${{ matrix.python-version }}-${{ matrix.comms-type }} | |
- name: Install libEnsemble, flake8, lock environment | |
run: | | |
pip install -e . | |
flake8 libensemble | |
- name: Activate API unit test if using mpich | |
if: matrix.mpi-version == 'mpich' | |
run: | | |
mv libensemble/tests/unit_tests/mpich-only_test_ensemble.py libensemble/tests/unit_tests/test_ensemble.py | |
- name: Remove ytopt-heffte test on Python 3.11 (easy way) | |
if: matrix.python-version == '3.11' | |
run: | | |
rm ./libensemble/tests/regression_tests/test_ytopt_heffte.py | |
- name: Run extensive tests, Ubuntu | |
if: matrix.os == 'ubuntu-latest' | |
run: | | |
./libensemble/tests/run-tests.sh -e -A "-W error" -z -${{ matrix.comms-type }} | |
# - name: Run simple tests, Windows | |
# if: matrix.os == 'windows-latest' | |
# run: | | |
# ./libensemble/tests/run-tests.sh -A "-W error" -z -${{ matrix.comms-type }} | |
- name: Run extensive tests, macOS | |
if: matrix.os == 'macos-latest' | |
env: | |
CONDA_BUILD_SYSROOT: /Users/runner/work/libensemble/sdk/MacOSX10.15.sdk | |
run: | | |
./libensemble/tests/run-tests.sh -e -A "-W error" -z -${{ matrix.comms-type }} | |
- name: Merge coverage, run Coveralls | |
env: | |
COVERALLS_PARALLEL: true | |
run: | | |
mv libensemble/tests/.cov* . | |
coveralls --service=github | |
coveralls: | |
name: Notify coveralls of all jobs completing | |
needs: [test-libE] | |
if: '! github.event.pull_request.draft' | |
runs-on: ubuntu-latest | |
container: python:3-slim | |
steps: | |
- name: Finished | |
run: | | |
pip3 install --upgrade coveralls | |
coveralls --finish | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
spellcheck: | |
name: Spellcheck release branch | |
if: contains(github.base_ref, 'main') | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: crate-ci/[email protected] |