Skip to content

Add mpi_runner_type submit option to executor #1655

Add mpi_runner_type submit option to executor

Add mpi_runner_type submit option to executor #1655

Workflow file for this run

name: libEnsemble-CI
on:
pull_request:
types:
- ready_for_review
- opened
- reopened
- synchronize
jobs:
test-libE:
if: '! github.event.pull_request.draft'
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
mpi-version: [mpich]
python-version: [3.8, 3.9, "3.10", "3.11"]
comms-type: [m, l]
include:
- os: macos-latest
python-version: 3.9
mpi-version: "mpich=4.0.3"
comms-type: m
- os: macos-latest
python-version: 3.9
mpi-version: "mpich=4.0.3"
comms-type: l
- os: ubuntu-latest
python-version: "3.10"
mpi-version: "mpich"
comms-type: t
# - os: ubuntu-latest
# mpi-version: "openmpi"
# python-version: "3.10"
# comms-type: l
# - os: windows-latest
# python-version: "3.10"
# comms-type: l
# mpi-version: "msmpi"
# - os: windows-latest
# python-version: "3.10"
# comms-type: m
# mpi-version: "msmpi"
env:
HYDRA_LAUNCHER: "fork"
TERM: xterm-256color
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v3
- name: Setup conda - Python ${{ matrix.python-version }}
uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: condaenv
miniconda-version: "latest"
python-version: ${{ matrix.python-version }}
channels: conda-forge
channel-priority: flexible
auto-update-conda: true
- uses: actions/cache/restore@v3
name: Restore cached dependencies
id: cache
if: matrix.os == 'ubuntu-latest'
with:
path: |
/home/runner/work/libensemble/libensemble/heffte/build/
/home/runner/.local
/usr/share/miniconda3/envs/condaenv
/usr/share/miniconda3/bin
/usr/share/miniconda3/lib
/usr/share/miniconda3/include
key: libe-${{ github.ref_name }}-${{ matrix.python-version }}-${{ matrix.comms-type }}
- name: Force-update certifi
run: |
python --version
pip install -I --upgrade certifi
# - name: Windows - Add clang path to $PATH env
# shell: bash
# if: matrix.os == 'windows-latest'
# run: |
# echo "PATH=$PATH:C:\msys64\mingw64\bin" >> $GITHUB_ENV
# echo "PATH=$PATH:C:\Program Files (x86)\Microsoft Visual Studio 12.0\VC\bin\amd64" >> $GITHUB_ENV
- name: Install Ubuntu compilers
if: matrix.os == 'ubuntu-latest'
run: conda install gcc_linux-64
# Roundabout solution on macos for proper linking with mpicc
- name: Install macOS compilers and older SDK
if: matrix.os == 'macos-latest'
run: |
wget https://github.com/phracker/MacOSX-SDKs/releases/download/11.3/MacOSX10.15.sdk.tar.xz
mkdir ../sdk; tar xf MacOSX10.15.sdk.tar.xz -C ../sdk
conda install clang_osx-64
# - name: Setup MPI (${{ matrix.mpi-version }})
# uses: mpi4py/setup-mpi@v1
# if: matrix.os == 'windows-latest'
# with:
# mpi: ${{ matrix.mpi-version }}
# - name: Install mpi4py on Windows
# if: matrix.os == 'windows-latest'
# run: pip install mpi4py
- name: Install mpi4py and MPI from conda
if: matrix.python-version != '3.10' && matrix.os != 'windows-latest'
run: |
conda install ${{ matrix.mpi-version }}
conda install mpi4py
- name: Install mpi4py from pip, MPI from conda
if: matrix.python-version == '3.10' && matrix.os != 'windows-latest'
run: |
conda install ${{ matrix.mpi-version }}
pip install mpi4py
- name: Install generator dependencies
if: matrix.os != 'windows-latest' && steps.cache.outputs.cache-hit != 'true'
run: |
python -m pip install --upgrade pip
conda env update --file install/gen_deps_environment.yml
pip install ax-platform==0.2.8
- name: Install surmise
if: matrix.os != 'macos-latest' && steps.cache.outputs.cache-hit != 'true'
run: |
pip install --upgrade git+https://github.com/surmising/surmise.git@develop
- name: Build ytopt and dependencies
if: matrix.python-version != '3.11' && matrix.os != 'windows-latest' && matrix.os != 'macos-latest'
run: |
pip install scikit-learn==1.1.2
pip install pandas==1.5.3
pip install ConfigSpace
pip install "ray[default]"
git clone https://github.com/ytopt-team/scikit-optimize.git
cd scikit-optimize
pip install .
cd ..
git clone -b version1 https://github.com/ytopt-team/autotune.git
cd autotune
pip install .
cd ..
git clone -b main https://github.com/ytopt-team/ytopt.git
cd ytopt
pip install .
cd ..
# - name: Install some generator dependencies on Windows
# if: matrix.os == 'windows-latest'
# run: |
# python -m pip install --upgrade pip
# conda install nlopt
# conda install scipy
# pip install mpmath
- name: Install generator dependencies for Ubuntu tests
if: matrix.os == 'ubuntu-latest' && steps.cache.outputs.cache-hit != 'true'
run: |
conda install octave
sudo apt-get install bc
# begin heffte build and dependencies
sudo apt install libfftw3-dev
git clone https://github.com/icl-utk-edu/heffte.git
mkdir heffte/build
cd heffte/build
pwd
cmake -D CMAKE_BUILD_TYPE=Release -D BUILD_SHARED_LIBS=ON -D CMAKE_INSTALL_PREFIX=./ -D Heffte_ENABLE_AVX=ON -D Heffte_ENABLE_FFTW=ON ../
make -j 4
make install
cp ./benchmarks/speed3d_c2c ../../libensemble/tests/regression_tests/
# end heffte build and dependencies
# pip install dragonfly-opt
# pip install git+https://github.com/dragonfly/dragonfly.git
pip install git+https://github.com/jlnav/dragonfly.git@fix/remove_npobject
pip install scikit-build packaging Tasmanian --user
- name: Copy heffte exe on cache-hit
if: matrix.os == 'ubuntu-latest' && steps.cache.outputs.cache-hit != 'false'
run: |
cd /home/runner/work/libensemble/libensemble
cp ./heffte/build/benchmarks/speed3d_c2c ./libensemble/tests/regression_tests/
- name: Install other testing dependencies
run: |
conda install pyzmq
pip install -r install/testing_requirements.txt
pip install -r install/misc_feature_requirements.txt
git clone https://github.com/argonne-lcf/balsam.git
sed -i -e "s/pyzmq>=22.1.0,<23.0.0/pyzmq>=23.0.0,<24.0.0/" ./balsam/setup.cfg
cd balsam; pip install -e .; cd ..
- uses: actions/cache/save@v3
name: Save dependencies to cache
if: matrix.os == 'ubuntu-latest'
with:
path: |
/home/runner/work/libensemble/libensemble/heffte/build/
/home/runner/.local
/usr/share/miniconda3/envs/condaenv
/usr/share/miniconda3/bin
/usr/share/miniconda3/lib
/usr/share/miniconda3/include
key: libe-${{ github.ref_name }}-${{ matrix.python-version }}-${{ matrix.comms-type }}
- name: Install libEnsemble, flake8, lock environment
run: |
pip install -e .
flake8 libensemble
- name: Activate API unit test if using mpich
if: matrix.mpi-version == 'mpich'
run: |
mv libensemble/tests/unit_tests/mpich-only_test_ensemble.py libensemble/tests/unit_tests/test_ensemble.py
- name: Remove ytopt-heffte test on Python 3.11 (easy way)
if: matrix.python-version == '3.11'
run: |
rm ./libensemble/tests/regression_tests/test_ytopt_heffte.py
- name: Run extensive tests, Ubuntu
if: matrix.os == 'ubuntu-latest'
run: |
./libensemble/tests/run-tests.sh -e -A "-W error" -z -${{ matrix.comms-type }}
# - name: Run simple tests, Windows
# if: matrix.os == 'windows-latest'
# run: |
# ./libensemble/tests/run-tests.sh -A "-W error" -z -${{ matrix.comms-type }}
- name: Run extensive tests, macOS
if: matrix.os == 'macos-latest'
env:
CONDA_BUILD_SYSROOT: /Users/runner/work/libensemble/sdk/MacOSX10.15.sdk
run: |
./libensemble/tests/run-tests.sh -e -A "-W error" -z -${{ matrix.comms-type }}
- name: Merge coverage, run Coveralls
env:
COVERALLS_PARALLEL: true
run: |
mv libensemble/tests/.cov* .
coveralls --service=github
coveralls:
name: Notify coveralls of all jobs completing
needs: [test-libE]
if: '! github.event.pull_request.draft'
runs-on: ubuntu-latest
container: python:3-slim
steps:
- name: Finished
run: |
pip3 install --upgrade coveralls
coveralls --finish
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
spellcheck:
name: Spellcheck release branch
if: contains(github.base_ref, 'main')
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- uses: crate-ci/[email protected]