Merge pull request #23 from MIRTK/hotfix/corpus_callosum_wm_probability

subtract CC probability from WM
MIRTK · Jul 27, 2019 · 737ba1d · 737ba1d
2 parents e02d933 + 2656147
commit 737ba1d
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/scripts/labels-multi-atlas.sh b/scripts/labels-multi-atlas.sh
@@ -114,6 +114,8 @@ for str in ${tissues};do let splitnum=splitnum+1; splitstr=$splitstr" $splitnum"
 for str in ${tissues};do splitstr=$splitstr" $sdir/labels/$str/$subj.nii.gz"; done
 run mirtk split-labels $num $transformedc $transformedw  $splitnum $splitstr 
 
+#remove CC from WM
+mirtk calculate $sdir/labels/wm/$subj.nii.gz -sub $sdir/labels/seg48/$subj.nii.gz -clamp-below 0 -out $sdir/labels/wm/$subj.nii.gz
 
 #create MAD
 if [ ! -f $sdir/MADs/$subj.nii.gz ];then