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I have faced the same problem but solved it because of this line:
So in the nrnpyenv.sh file, I modify the code setting the PYTHON variable equal to the crazy path above (in the part just below "$WHICH python3", line 83 for me)
by changing the next line to:
PYTHON="/cygdrive/c/ProgramData/Anaconda3/python.exe"
here I have pointed to the Anaconda installed directory.
Error message
Solution using this article:
https://www.neuron.yale.edu/phpBB/viewtopic.php?t=4139
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