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OgSH3_out.txt
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OgSH3_out.txt
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BLASTN 2.2.28+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: zizania_palustris_13Nov2018_okGsv.fasta
2,183 sequences; 1,288,768,912 total letters
Query= AB920993.1 Oryza glaberrima SH3 mRNA for truncated trihelix-type
transcription factor, complete cds, strain: IRGC 104048
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
Scaffold_453;HRSCAF=2583 725 0.0
Scaffold_18;HRSCAF=1069 664 0.0
> Scaffold_453;HRSCAF=2583
Length=4333358
Score = 725 bits (392), Expect = 0.0
Identities = 618/723 (85%), Gaps = 32/723 (4%)
Strand=Plus/Minus
Query 55 GCGGCCTCGCCGCTCGCGCTGCTccgcgcgcacgggcacgggcacctcacgccgccgtcg 114
||| |||||||||||||||| |||||||| || | | |||||||||||||||||||
Sbjct 3281380 GCGTCCTCGCCGCTCGCGCTCATCCGCGCGAAC---C-C--GCACCTCACGCCGCCGTCG 3281327
Query 115 gcggcgacgg-ggccggcgccgccgccgccgtcgccggcgtcggggtcggcgccgcgggA 173
||| | ||| | | || ||| | |||||| ||||| || ||| |||||||||||||||
Sbjct 3281326 CCGGTGCCGGCGACGGGACCCG-CTCCGCCGCCGCCGTCGCCGGTGTCGGCGCCGCGGGA 3281268
Query 174 CTACCGCAAGGGGAACTGGACGCTCCACGAGACGCTCATCCTCATCACCGCCAAGCGTCT 233
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3281267 CTACCGCAAGGGCAACTGGACGCTCCACGAGACGCTCATCCTCATCACCGCCAAGCGCCT 3281208
Query 234 CGACGACGACCGCCGCGCCGG-CGT--T-G-GG-GGTGGCGCGGCGGCTGGTGGC-G-GT 285
||||||||||||||| || || || | | || ||||| | || ||||||| | | ||
Sbjct 3281207 CGACGACGACCGCCGTGCTGGTGGTGGTGGTGGTGGTGGTGGGGTTGCTGGTGCCGGCGT 3281148
Query 286 GGC-GC---CGGATCGCCGCCGACGCCGAGGTCGGCGGAGCAGCGGTGGAAGTGGGTGGA 341
||| || || ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3281147 GGCGGCGGTGGGGTCGCCGCCGACGCCGCGGTCGGCGGAGCAGCGGTGGAAGTGGGTGGA 3281088
Query 342 GAACTACTGCTGGAAGAACGGCTGCCTCCGCAGCCAGAACCAGTGCAATGACAAGTGGGA 401
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3281087 GAACTACTGCTGGAAGAACGGCTGCCTCCGCAGCCAGAACCAGTGCAACGACAAGTGGGA 3281028
Query 402 CAACCTCCTCCGCGACTACAAGAAGGTCCGCGACTACGAGTcccgcgtcgccgccgccgc 461
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 3281027 CAACCTCCTCCGCGACTACAAGAAGGTCCGCGACTACGAGTCCCGTATCGCCGCCGCGGC 3280968
Query 462 cgtcaccggcggcgcggccgccgccaactccgcccccctcccgTCGTACTGGACGATGGA 521
|| || || || ||||||| |||||| | ||| |||||||||| |||||||| ||||
Sbjct 3280967 CGCCAGCGCCGCCGCGGCC-CCGCCACAT--GCCGCCCTCCCGTCCTACTGGACATTGGA 3280911
Query 522 GCGGCACGAGCGCAAGGACTGCAACCTCCCCACCAACCTGGCGCCGGAGGTCTACGACGC 581
||||||||||||||||||| ||||||| ||||| ||||| ||||| |||||| |||||||
Sbjct 3280910 GCGGCACGAGCGCAAGGACCGCAACCTACCCACAAACCTCGCGCCCGAGGTCCACGACGC 3280851
Query 582 GCTCTCCGAGGTGCTCTcccgccgcgcggcgcgacgcggcggcgccacgatcgcgcccac 641
|||||||||||| || ||||||||||| ||||| || || ||||||||||||||||||||
Sbjct 3280850 GCTCTCCGAGGTTCTATCCCGCCGCGCCGCGCGGCGGGGAGGCGCCACGATCGCGCCCAC 3280791
Query 642 cccgccgccaccaccgctcgcgctgccgcc---gccgccgccgccgcc-ctcgccgc-c- 695
| | || | || ||||| ||||||||||| ||||||||||||||| ||| || | |
Sbjct 3280790 CTCTCC-CG-CC-CCGCTGGCGCTGCCGCCACCGCCGCCGCCGCCGCCACTCTCCCCTCC 3280734
Query 696 gAAGCCTCTCGTCGCGCAGCAGcaccaccaccatcacggccatcaccaccacccaccTCC 755
|||||||||| || ||||||| || ||||| ||||| ||||||||||| || | |||
Sbjct 3280733 GAAGCCTCTCATCACGCAGCACCAGCACCAGCATCATCATCATCACCACCATCCTCATCC 3280674
Query 756 TCC 758
|||
Sbjct 3280673 TCC 3280671
Score = 719 bits (389), Expect = 0.0
Identities = 618/724 (85%), Gaps = 33/724 (5%)
Strand=Plus/Minus
Query 55 GCGGCCTCGCCGCTCGCGCTGCTccgcgcgcacgggcacgggcacctcacgccgccgtcg 114
||| |||||||||||||||| |||||||| || | | |||||||||||||||||||
Sbjct 3349249 GCGTCCTCGCCGCTCGCGCTCATCCGCGCGAAC---C-C--GCACCTCACGCCGCCGTCG 3349196
Query 115 gcggcgacgg-ggccggcgccgccgccgccgtcgccggcgtcggggtcggcgccgcgggA 173
||| | ||| | | || ||| | |||||| ||||| || ||| |||||||||||||||
Sbjct 3349195 CCGGTGCCGGCGACGGGACCCG-CTCCGCCGCCGCCGTCGCCGGTGTCGGCGCCGCGGGA 3349137
Query 174 CTACCGCAAGGGGAACTGGACGCTCCACGAGACGCTCATCCTCATCACCGCCAAGCGTCT 233
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3349136 CTACCGCAAGGGCAACTGGACGCTCCACGAGACGCTCATCCTCATCACCGCCAAGCGCCT 3349077
Query 234 CGACGACGACCGCCGCGCCGG-CGT--T-G-GG-GGTGGCGCGGCGGCTGGTGGC-G-GT 285
||||||||||||||| || || || | | || ||||| | || ||||||| | | ||
Sbjct 3349076 CGACGACGACCGCCGTGCTGGTGGTGGTGGTGGTGGTGGTGGGGTTGCTGGTGCCGGCGT 3349017
Query 286 GGC-GC---CGGATCGCCGCCGACGCCGAGGTCGGCGGAGCAGCGGTGGAAGTGGGTGGA 341
||| || || ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3349016 GGCGGCGGTGGGGTCGCCGCCGACGCCGCGGTCGGCGGAGCAGCGGTGGAAGTGGGTGGA 3348957
Query 342 GAACTACTGCTGGAAGAACGGCTGCCTCCGCAGCCAGAACCAGTGCAATGACAAGTGGGA 401
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3348956 GAACTACTGCTGGAAGAACGGCTGCCTCCGCAGCCAGAACCAGTGCAACGACAAGTGGGA 3348897
Query 402 CAACCTCCTCCGCGACTACAAGAAGGTCCGCGACTACGAGTcccgcgtcgccgccgccg- 460
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3348896 CAACCTCCTCCGCGACTACAAGAAGGTCCGCGACTACGAGTCCCGTATCGCCGCCGCCGG 3348837
Query 461 ccgtcaccggcggcgcggccgccgccaactccgcccccctcccgTCGTACTGGACGATGG 520
||| || || || ||||||| |||||| | ||| |||||||||| |||||||| |||
Sbjct 3348836 CCGCCAGCGCCGCCGCGGCC-CCGCCACAT--GCCGCCCTCCCGTCCTACTGGACATTGG 3348780
Query 521 AGCGGCACGAGCGCAAGGACTGCAACCTCCCCACCAACCTGGCGCCGGAGGTCTACGACG 580
|||||||||||||||||||| ||||||| ||||| ||||| ||||| |||||| ||||||
Sbjct 3348779 AGCGGCACGAGCGCAAGGACCGCAACCTACCCACAAACCTCGCGCCCGAGGTCCACGACG 3348720
Query 581 CGCTCTCCGAGGTGCTCTcccgccgcgcggcgcgacgcggcggcgccacgatcgcgccca 640
||||||||||||| || ||||||||||| ||||| || || |||||||||||||||||||
Sbjct 3348719 CGCTCTCCGAGGTTCTATCCCGCCGCGCCGCGCGGCGGGGAGGCGCCACGATCGCGCCCA 3348660
Query 641 ccccgccgccaccaccgctcgcgctgccgcc---gccgccgccgccgcc-ctcgccgc-c 695
|| | || | || ||||| ||||||||||| ||||||||||||||| ||| || | |
Sbjct 3348659 CCTCTCC-CG-CC-CCGCTGGCGCTGCCGCCACCGCCGCCGCCGCCGCCACTCTCCCCTC 3348603
Query 696 -gAAGCCTCTCGTCGCGCAGCAGcaccaccaccatcacggccatcaccaccacccaccTC 754
|||||||||| || ||||||| || ||||| ||||| ||||| ||||| || | ||
Sbjct 3348602 CGAAGCCTCTCATCACGCAGCACCAGCACCAGCATCATCATCATCATCACCATCCTCATC 3348543
Query 755 CTCC 758
||||
Sbjct 3348542 CTCC 3348539
> Scaffold_18;HRSCAF=1069
Length=98769966
Score = 664 bits (359), Expect = 0.0
Identities = 596/703 (85%), Gaps = 46/703 (7%)
Strand=Plus/Minus
Query 52 GCGGCGGCCTCGCCGCTCGCGCTGCTccgcgcg--cac-gggcacgggca-cctcacg-c 106
||||||||||||||||| ||||| |||||||| ||| ||| ||| || |||| |
Sbjct 97797920 GCGGCGGCCTCGCCGCTGGCGCTCATCCGCGCGCACACTCACCACCCGCACCCGCACGTC 97797861
Query 107 -cg-c-c-gtcggcggcgacggggccggcgccgccgccgccgtcgccggcgtcggggtcg 162
|| | | |||| || |||||||||| |||||||||||||||||||| | || ||||
Sbjct 97797860 ACGCCTCTGTCGCCGTCGACGGGGCCCGCGCCGCCGCCGCCGTCGCC-G-GT----GTCG 97797807
Query 163 gcgccgcgggACTACCGCAAGGGGAACTGGACGCTCCACGAGACGCTCATCCTCATCACC 222
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 97797806 GCGCCGCGGGACTACCGCAAGGGCAACTGGACGCTCCACGAGACGCTCGTCCTCATCACC 97797747
Query 223 GCCAAGCGTCTCGACGACGACCGCCGCGCCGG-CGT--TGGGGGTGGCG-CGGCGGCTGG 278
|||||||| ||||||||||||||||| || || || ||| | ||||| |||| || ||
Sbjct 97797746 GCCAAGCGCCTCGACGACGACCGCCGTGCTGGTGGTGCTGGTGCTGGCGCCGGC-GC-GG 97797689
Query 279 TGGCGGTGGCGCCGGATCGCCGCCGACGCCGAGGTCGGCGGAGCAGCGGTGGAAGTGGGT 338
|||| || | | | |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 97797688 CAGCGGCGGGGTC-G-CCGCCGCCGACGCCGCGGTCGGCGGAGCAGCGGTGGAAGTGGGT 97797631
Query 339 GGAGAACTACTGCTGGAAGAACGGCTGCCTCCGCAGCCAGAACCAGTGCAATGACAAGTG 398
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 97797630 GGAGAACTACTGCTGGAAGAACGGCTGCCTCCGCAGCCAGAACCAGTGCAACGACAAGTG 97797571
Query 399 GGACAACCTCCTCCGCGACTACAAGAAGGTCCGCGACTACGAGTcccgcgtcgccgccgc 458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 97797570 GGACAACCTCCTCCGCGACTACAAGAAGGTCCGCGACTACGAGTCCCGCGTCGCCGCCAC 97797511
Query 459 cgccgtcac--cggc----ggcgcg-gc-c-g-c-c-gcca-actccgcc-c----c-cc 499
|||| | | |||| ||||| || | | | | |||| |||| ||| | | ||
Sbjct 97797510 GGCCGGCGCGGCGGCCTCTGGCGCCAGCACCGGCGCCGCCACACTC-GCCGCAGTACTCC 97797452
Query 500 tcccgTCGTACTGGACGATGGAGCGGCACGAGCGCAAGGACTGCAACCTCCCCACCAACC 559
||||||| |||||||| || ||||||||||| ||||||||| ||||||||||||||||||
Sbjct 97797451 TCCCGTCCTACTGGACCATCGAGCGGCACGACCGCAAGGACCGCAACCTCCCCACCAACC 97797392
Query 560 TGGCGCCGGAGGTCTACGACGCGCTCTCCGAGGTGCTCTcccgccgcgcggcgcgacgcg 619
| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |
Sbjct 97797391 TCGCGCCGGAGGTCTACGACGCGCTCTCGGAGGTCCTCTCCCGCCGCGCCGCGCGACGGG 97797332
Query 620 gcggcgccacgatcgcgcccaccccgccgccaccac-cgctc-gc-gctgccgccgccgc 676
|||||| ||||||||| |||||||| || || || | ||||| || || ||| || || |
Sbjct 97797331 GCGGCGTCACGATCGCACCCACCCCTCCACCCCCGCTCGCTCTGCCGCCGCCACCACCCC 97797272
Query 677 cgccgccgccctcgccgccgAAGCCTCTCGTCGCGCAGCAGca 719
| || || ||||| || |||||||||||| || | ||||||||
Sbjct 97797271 CACCTCCACCCTCCCCTCCGAAGCCTCTCATCACCCAGCAGCA 97797229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 944621208465
Database: zizania_palustris_13Nov2018_okGsv.fasta
Posted date: Jul 9, 2019 4:10 PM
Number of letters in database: 1,288,768,912
Number of sequences in database: 2,183
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5