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OsLG1_out.txt
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OsLG1_out.txt
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BLASTN 2.2.28+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: zizania_palustris_13Nov2018_okGsv.fasta
2,183 sequences; 1,288,768,912 total letters
Query= AB776991.1 Oryza sativa Japonica Group LG1 mRNA for squamosa
promoter-binding-like protein 8, complete cds, cultivar: Nipponbare
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Scaffold_18;HRSCAF=1069 558 1e-156
Scaffold_453;HRSCAF=2583 529 7e-148
Scaffold_48;HRSCAF=1451 163 9e-38
Scaffold_222;HRSCAF=2098 158 4e-36
Scaffold_93;HRSCAF=1687 158 4e-36
> Scaffold_18;HRSCAF=1069
Length=98769966
Score = 558 bits (302), Expect = 1e-156
Identities = 464/536 (87%), Gaps = 36/536 (7%)
Strand=Plus/Plus
Query 160 CTCGGCTACAACCTGGAGCCGAGCTCCCTAGCTCTGCTTCCCCCTTCCAACGCCGCCGCC 219
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| |
Sbjct 97288859 CTCGGCTACAACCTGGAGCCGAGCTCTCTAGCTCTGCTCCCCCCTTCCAACGCTGCC-TC 97288917
Query 220 GCCGCAGCACACCACGCCACCATCGCCCACGCCTCCCCACATGACCTCCTCCAGTTCTAC 279
| || | |||||| || | ||||||| | ||||| |||||| |||||||||| |||
Sbjct 97288918 G--GC--C-CACCACACCTCGGTCGCCCATGGATCCCCCCATGACATCCTCCAGTTTTAC 97288972
Query 280 CCGACCTCGCACTACCTCGCCGCTGCCGGCGGCGCCGGTGGCGGAGGCAACCCCTACAGC 339
|| ||||| | | | || | || | | || | | | || ||||||||||||
Sbjct 97288973 CCTACCTC-C-C-A-CT--AC-CT--C-AC--CG-C-----C-G-GG-AACCCCTACAGC 97289011
Query 340 CACTTCACGGCGGCGGCGGCGGCCGGGAGCACCTTCCAGTCGTACTACCAGCAGCCGCCG 399
|||||||| |||| || || || || ||||||||||||||||||||| |||
Sbjct 97289012 CACTTCACTGCGG-GG-AGC-ACC-----TTCC-ACCAGTCGTACTACCAGCAGCCACCG 97289062
Query 400 CAGGCCGCGCCGGAGTACTACTTCCCGACGCTGGTCAGCTCCGCCGAGGAGAACATGGCC 459
|||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 97289063 CAGGCCACGCCGGAGTACTACTTCCCCACCCTGGTCAGCTCCGCGGAGGAGAACATGGCC 97289122
Query 460 AGCTTCGCCGCCACCCAGCTCGGCCTCAACCTCGGCTACCGGACCTACTTCCCGCCGAGA 519
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 97289123 AGCTTCGCCGCCACGCAGCTGGGCCTCAACCTCGGCTACCGGACCTACTTCCCGCCGAGA 97289182
Query 520 GGCGGCTACACCTACGGCCACCACCCGCCGCGGTGCCAGGCCGAGGGCTGCAAGGCCGAC 579
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 97289183 GGGGGCTACACCTACGGCCACCACCCGCCGCGGTGCCAGGCGGAGGGCTGCAAGGCCGAT 97289242
Query 580 CTCTCCAGCGCCAAGCGCTACCACCGCCGCCACAAGGTGTGCGAGCACCACTCCAAGGCG 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 97289243 CTCTCCAGCGCCAAGCGCTACCACCGCCGCCACAAGGTGTGCGAGCACCACTCCAAGGCG 97289302
Query 640 CCCGTCGTCGTCACCGCCGGCGGCCTCCACCAGAGATTCTGCCAGCAGTGCAGCAG 695
|| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 97289303 CCGGTCGTCGTCACCGCCGGTGGCCTCCACCAGAGGTTCTGCCAGCAGTGCAGCAG 97289358
Score = 418 bits (226), Expect = 2e-114
Identities = 356/415 (86%), Gaps = 24/415 (6%)
Strand=Plus/Plus
Query 851 ACA-AAGCAGGAAGTAGCAGCAAG---AACGCAGGCATTGGAGACGGTTTCGAGACACAG 906
||| |||||||||||||||||||| || |||||||||||||| || || ||||||||
Sbjct 97291389 ACAGAAGCAGGAAGTAGCAGCAAGAATAATGCAGGCATTGGAGATGGCTTGGAGACACAA 97291448
Query 907 CTACTGGGGGGTGCAC-A--CATGTCCAAAGATCAAGACCAAGCCATGGATCTGGGAGAG 963
|| |||||| |||||| | |||||||||||||||||| || |||||||||| |||||
Sbjct 97291449 CTGCTGGGGAGTGCACTACTCATGTCCAAAGATCAAGATGAAACCATGGATCTTGGAGAT 97291508
Query 964 GTGGTGAAAGAAGCTGTAGATCCCAAAGGTAAGGCATCGATgcagcagcagcagcagcaa 1023
|||||||||||||| ||||||||||| ||||||||||||||| ||||||||| ||||||
Sbjct 97291509 GTGGTGAAAGAAGCAGTAGATCCCAAGGGTAAGGCATCGATGATGCAGCAGCATCAGCAA 97291568
Query 1024 g--ca-catcatgggattcatcagcagagccaccagca-gcatGGCTTCCCTTTCCCTTC 1079
| || || ||||| ||||||| |||||||| ||||| || |||||||||||| |||||
Sbjct 97291569 GCACACCACCATGGCCTTCATCACCAGAGCCAGCAGCATGC-TGGCTTCCCTTTTCCTTC 97291627
Query 1080 GTCGTCTGGCTCGTGCTTATTCCCTCAGAGCCAAGGAGCTGTCTCGAGCACTGACAC-A- 1137
|||||| |||||||||||||||||||||||||||| ||| || || || |||||||| |
Sbjct 97291628 GTCGTCCGGCTCGTGCTTATTCCCTCAGAGCCAAGCAGCCGTGTCAAGTACTGACACCAC 97291687
Query 1138 -TCAAATATAGCTCAAGTGCAAGAACCAAGCTTAGCCTTCCATCAGCAGCATCACCAACA 1196
||||||||||||||||||||||||||| || ||| || ||| | ||||| || ||
Sbjct 97291688 ATCAAATATAGCTCAAGTGCAAGAACCA-GCA-AGC-TT--ATC-GTTCCATCAGCA-CA 97291740
Query 1197 CAGCAACATCCTTCAGCTTGGACAGGCGATGTTTGATCTCGACTTCGATCACTAG 1251
|||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 97291741 --GCAACATCCTTCAGCTCGGACAGGCGATGTTTGATCTCGACTTCGATCACTAG 97291793
> Scaffold_453;HRSCAF=2583
Length=4333358
Score = 529 bits (286), Expect = 7e-148
Identities = 320/337 (95%), Gaps = 0/337 (0%)
Strand=Plus/Plus
Query 359 CGGCCGGGAGCACCTTCCAGTCGTACTACCAGCAGCCGCCGCAGGCCGCGCCGGAGTACT 418
|||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 2635874 CGGCAGGGAGCACCTTCCAGTCGTACTACCAGCAGCCGCCCCAGGCCACGCCGGAGTACT 2635933
Query 419 ACTTCCCGACGCTGGTCAGCTCCGCCGAGGAGAACATGGCCAGCTTCGCCGCCACCCAGC 478
||||||| || ||||||||||| || |||||||||||||||||||| |||||||| ||||
Sbjct 2635934 ACTTCCCCACCCTGGTCAGCTCGGCGGAGGAGAACATGGCCAGCTTTGCCGCCACGCAGC 2635993
Query 479 TCGGCCTCAACCTCGGCTACCGGACCTACTTCCCGCCGAGAGGCGGCTACACCTACGGCC 538
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2635994 TGGGCCTCAACCTCGGCTACCGGACCTACTTCCCGCCGAGAGGCGGCTACACCTACGGCC 2636053
Query 539 ACCACCCGCCGCGGTGCCAGGCCGAGGGCTGCAAGGCCGACCTCTCCAGCGCCAAGCGCT 598
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2636054 ACCACCCGCCGCGGTGCCAGGCAGAGGGCTGCAAGGCCGACCTCTCCAGCGCCAAGCGCT 2636113
Query 599 ACCACCGCCGCCACAAGGTGTGCGAGCACCACTCCAAGGCGCCCGTCGTCGTCACCGCCG 658
| |||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 2636114 ATCACCGCCGACACAAGGTGTGCGAGCACCACTCCAAGGCGCCGGTGGTCGTCACCGCCG 2636173
Query 659 GCGGCCTCCACCAGAGATTCTGCCAGCAGTGCAGCAG 695
|||| ||||||||||| ||||||||||||||||||||
Sbjct 2636174 GCGGTCTCCACCAGAGGTTCTGCCAGCAGTGCAGCAG 2636210
Score = 399 bits (216), Expect = 6e-109
Identities = 347/406 (85%), Gaps = 26/406 (6%)
Strand=Plus/Plus
Query 851 ACA-AAGCAGGAAGTAGCAGCAAGAACGCAGGCATTGGAGACGGTTTCGAGACACAGCTA 909
||| |||||||||||||||||||||| || ||||||||||| || || |||||||| ||
Sbjct 2638443 ACAGAAGCAGGAAGTAGCAGCAAGAATGCGGGCATTGGAGATGGATTGGAGACACAACTG 2638502
Query 910 CTGGGGGGTGCACACATGTCCAAAGATCAAGACCAAGCCATGGATCTGGGAGAGGTGGTG 969
||||| |||||| ||||||||||||| |||| || |||||| ||| ||||| ||||||
Sbjct 2638503 CTGGGTAGTGCACTCATGTCCAAAGATGAAGATGAAACCATGGGTCTTGGAGATGTGGTG 2638562
Query 970 AAAGAAGC-TGTAGATCCCAAAGGTAAGGCATCGATgcagcagcagcagcagcaagcaca 1028
|||||||| ||||||||||| ||||||||||||||||||||||| |||| || |||
Sbjct 2638563 AAAGAAGCAGGTAGATCCCAAGGGTAAGGCATCGATGCAGCAGCA--AGCA-CAC-CAC- 2638617
Query 1029 tcatgggattcatcagcagagccaccagcagcatGGCTTCCCTTTCCCTTCGTCGTCTGG 1088
||||| |||||||| |||||||| |||||||||||||||||| ||||||||||| ||
Sbjct 2638618 -CATGGCATTCATCACCAGAGCCA---GCAGCATGGCTTCCCTTTTCCTTCGTCGTCGGG 2638673
Query 1089 CTCGTGCTTATTCCCTCAGAGCCAAGGAGCTGTCTCGAGCACTGACAC-A--TCAAATAT 1145
|||||||||||||||||||||||||| |||||| || || |||||||| | ||||||||
Sbjct 2638674 CTCGTGCTTATTCCCTCAGAGCCAAGCAGCTGTGTCAAGTACTGACACCACATCAAATAT 2638733
Query 1146 AGCTCAAGTGCAAGAACCAAGCTTAGCCTTCCATCAGCAGCATCACCAACACAGCAACAT 1205
|| |||||| ||||||||||||||||| ||||||||||| || |||||||
Sbjct 2638734 AGGTCAAGTCCAAGAACCAAGCTTAGCGTTCCATCAGCA-CA-----------GCAACAT 2638781
Query 1206 CCTTCAGCTTGGACAGGCGATGTTTGATCTCGACTTCGATCACTAG 1251
||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 2638782 CCTTCAGCTCGGACAGGCGATGTTTGATCTCGACTTTGATCACTAG 2638827
Score = 193 bits (104), Expect = 1e-46
Identities = 142/161 (88%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 693 CAGATTCCATCTTCTTGATGAGTTCGACGATGCCAAGAAGAGCTGCAGGAAGCGACTCGC 752
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 2638098 CAGATTCCATCTTCTTGATGAGTTCGACGACGCCAAGAAGAGCTGCAGGAAGCGCCTCGC 2638157
Query 753 CGACCACAACCGCCGGCGGAGGAAGTCGAAGCCGTCCGACGGCGAGCATTCTGGTGAAAA 812
|||||||||||||| || |||||||| |||||||| |||||||| ||| | ||| ||
Sbjct 2638158 GGACCACAACCGCCGTCGAAGGAAGTCAAAGCCGTCTGACGGCGAACATGGCGCTGACAA 2638217
Query 813 GAGAAGGGCGCAGGCGAATAAATCGGCAGCTACTAAAGACA 853
|||||| || |||||||||||| | ||| || |||||||||
Sbjct 2638218 GAGAAGAGCACAGGCGAATAAAGCAGCAACTGCTAAAGACA 2638258
> Scaffold_48;HRSCAF=1451
Length=118006097
Score = 163 bits (88), Expect = 9e-38
Identities = 136/159 (86%), Gaps = 3/159 (2%)
Strand=Plus/Minus
Query 537 CCACCACCCGCCGCGGTGCCAGGCCGAGGGCTGCAAGGCCGACCTCTCCAGCGCCAAGCG 596
|||||| || || || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 53488270 CCACCAGCCCCCTCGCTGCCAGGCCGAGGGCTGCAAGGCCGACCTCTCCGGCGCCAAGCA 53488211
Query 597 CTACCACCGCCGCCACAAGGTGTGCGAGCACCACTCCAAGGCGCCCGTCGTCGTCACCGC 656
||||||||||||||||||||| |||||| ||||| ||||||| |||||||| || | |
Sbjct 53488210 CTACCACCGCCGCCACAAGGTCTGCGAGTACCACGCCAAGGCCTCCGTCGTC-TC-CA-C 53488154
Query 657 CGGCGGCCTCCACCAGAGATTCTGCCAGCAGTGCAGCAG 695
|||||| || ||| | ||||||||||| ||||||||
Sbjct 53488153 TGGCGGCAAGCAGCAGCGCTTCTGCCAGCAATGCAGCAG 53488115
> Scaffold_222;HRSCAF=2098
Length=67301
Score = 158 bits (85), Expect = 4e-36
Identities = 135/159 (85%), Gaps = 3/159 (2%)
Strand=Plus/Plus
Query 537 CCACCACCCGCCGCGGTGCCAGGCCGAGGGCTGCAAGGCCGACCTCTCCAGCGCCAAGCG 596
|||||| || || |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 8230 CCACCAGCCTCCTCGGTGCCAGGCCGAGGGCTGCAAGGCCGACCTCTCCGCCGCCAAGCA 8289
Query 597 CTACCACCGCCGCCACAAGGTGTGCGAGCACCACTCCAAGGCGCCCGTCGTCGTCACCGC 656
||||||||||||||||||||| ||||| ||||| ||||||| | | |||||| | ||
Sbjct 8290 CTACCACCGCCGCCACAAGGTCTGCGACTACCACGCCAAGGCCACAGCCGTCGT-A--GC 8346
Query 657 CGGCGGCCTCCACCAGAGATTCTGCCAGCAGTGCAGCAG 695
||||||| || ||| | ||||| ||||||||||||||
Sbjct 8347 CGGCGGCAAGCAGCAGCGCTTCTGTCAGCAGTGCAGCAG 8385
> Scaffold_93;HRSCAF=1687
Length=103377072
Score = 158 bits (85), Expect = 4e-36
Identities = 135/159 (85%), Gaps = 3/159 (2%)
Strand=Plus/Plus
Query 537 CCACCACCCGCCGCGGTGCCAGGCCGAGGGCTGCAAGGCCGACCTCTCCAGCGCCAAGCG 596
|||||| || || |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 29879517 CCACCAGCCTCCTCGGTGCCAGGCCGAGGGCTGCAAGGCCGACCTCTCCTCCGCCAAGCA 29879576
Query 597 CTACCACCGCCGCCACAAGGTGTGCGAGCACCACTCCAAGGCGCCCGTCGTCGTCACCGC 656
||||||||||||||||||||| ||||| ||||| ||||||| | | |||||| | ||
Sbjct 29879577 CTACCACCGCCGCCACAAGGTCTGCGACTACCACGCCAAGGCCACAGCCGTCGT-A--GC 29879633
Query 657 CGGCGGCCTCCACCAGAGATTCTGCCAGCAGTGCAGCAG 695
||||||| || ||| | ||||| ||||||||||||||
Sbjct 29879634 CGGCGGCAAGCAGCAGCGCTTCTGTCAGCAGTGCAGCAG 29879672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 1573506878262
Database: zizania_palustris_13Nov2018_okGsv.fasta
Posted date: Jul 9, 2019 4:10 PM
Number of letters in database: 1,288,768,912
Number of sequences in database: 2,183
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5