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OsSH1_out.txt
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OsSH1_out.txt
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BLASTN 2.2.28+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: zizania_palustris_13Nov2018_okGsv.fasta
2,183 sequences; 1,288,768,912 total letters
Query= EU846982.1 Oryza sativa Japonica Group clone KCS205G10 YABBY mRNA,
complete cds
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Scaffold_1064;HRSCAF=3428 134 5e-29
Scaffold_3;HRSCAF=502 117 5e-24
> Scaffold_1064;HRSCAF=3428
Length=111260184
Score = 134 bits (72), Expect = 5e-29
Identities = 85/91 (93%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 102 CGGG-GCTAGAGGAATGTCGGCACAGATCGTGCCGGCGCCGGAGCATGTGTGCTACGTGC 160
|||| ||| |||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct 61603563 CGGGAGCT-GAGGAATGTCAGCACAAATCGCGCCGGCGCCGGAGCATGTGTGCTACGTGC 61603621
Query 161 ACTGCAACTTCTGCAACACAATTTTCGCGGT 191
||||||||||||||||||||||| |||||||
Sbjct 61603622 ACTGCAACTTCTGCAACACAATTCTCGCGGT 61603652
Score = 124 bits (67), Expect = 3e-26
Identities = 78/83 (94%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 482 TTATCAAGGAAGAGATCCGGAGGATAAAAGCAAACAATCCTGACATAAGCCACAGAGAAG 541
||| || |||||| ||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 61608081 TTA-CAGGGAAGAAATCCGGAGGATAAAAGCAAACAACCCTGACATAAGCCACAAAGAAG 61608139
Query 542 CCTTCAGTACTGCAGCAAAGAAT 564
|||||||||||||||||||||||
Sbjct 61608140 CCTTCAGTACTGCAGCAAAGAAT 61608162
Score = 78.7 bits (42), Expect = 3e-12
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 445 GAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAG 489
||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61607666 GAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATTAAG 61607710
> Scaffold_3;HRSCAF=502
Length=58865324
Score = 117 bits (63), Expect = 5e-24
Identities = 75/81 (93%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 111 AGGAATGTCGGCACAGATCGTGCCGGCGCCGGAGCATGTGTGCTACGTGCACTGCAACTT 170
||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 53532214 AGGAATGTCAGCACAGATCGCACCGGCGGCGGAGCATGTGTGCTACGTGCACTGCAACTT 53532273
Query 171 CTGCAACACAATTTTCGCGGT 191
||||||||| ||| |||||||
Sbjct 53532274 CTGCAACACGATTCTCGCGGT 53532294
Score = 113 bits (61), Expect = 7e-23
Identities = 71/76 (93%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 489 GGAAGAGATCCGGAGGATAAAAGCAAACAATCCTGACATAAGCCACAGAGAAGCCTTCAG 548
|||||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 53539189 GGAAGAAATCCGGAGGATAAAGGCAAACAACCCCGACATAAGCCACAGAGAAGCCTTCAG 53539248
Query 549 TACTGCAGCAAAGAAT 564
||| ||||||||||||
Sbjct 53539249 TACAGCAGCAAAGAAT 53539264
Score = 110 bits (59), Expect = 9e-22
Identities = 71/77 (92%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 565 TGGGCGCATTTCCCGAACATCCATTTCGGGTTAGGCTCCCATGAGAGCAGCAAGAAGCTC 624
||||| ||||| |||||||| |||||||| ||||||||| ||||||||||||||||||||
Sbjct 53541388 TGGGCACATTTTCCGAACATTCATTTCGGATTAGGCTCCAATGAGAGCAGCAAGAAGCTC 53541447
Query 625 GATGAGGCCATTGGAGC 641
||||||||||| |||||
Sbjct 53541448 GATGAGGCCATCGGAGC 53541464
Score = 86.1 bits (46), Expect = 2e-14
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 442 CCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAGGAAG 493
|||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 53539047 CCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATTAAGTAAG 53539098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 1219115502330
Database: zizania_palustris_13Nov2018_okGsv.fasta
Posted date: Jul 9, 2019 4:10 PM
Number of letters in database: 1,288,768,912
Number of sequences in database: 2,183
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5