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OsSH8_out.txt
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OsSH8_out.txt
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BLASTN 2.2.28+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: zizania_palustris_13Nov2018_okGsv.fasta
2,183 sequences; 1,288,768,912 total letters
Query= KX580176.1 Oryza sativa cultivar E6-5 MADS-box transcription factor
7 (SH8) mRNA, sh8 allele, complete cds
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
Scaffold_1062;HRSCAF=3426 303 4e-80
Scaffold_93;HRSCAF=1687 270 4e-70
Scaffold_1;HRSCAF=83 270 4e-70
Scaffold_415;HRSCAF=2522 239 1e-60
Scaffold_48;HRSCAF=1451 213 7e-53
Scaffold_1064;HRSCAF=3428 159 9e-37
> Scaffold_1062;HRSCAF=3426
Length=75690682
Score = 303 bits (164), Expect = 4e-80
Identities = 178/185 (96%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 68 ATGGGGAGGGGTCGGGTGGAGCTGAAGAGGATCGAGAACAAGATCAACCGGCAGGTGACG 127
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 70360877 ATGGGGAGGGGGCGCGTGGAGCTGAAGCGGATCGAGAACAAGATCAACCGGCAGGTGACG 70360936
Query 128 TTCGCCAAGCGCAGGAATGGCCTGCTCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGAC 187
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 70360937 TTCGCCAAGCGCCGGAATGGCCTGCTCAAGAAGGCCTACGAGCTCTCCGTCCTCTGCGAC 70360996
Query 188 GCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACC 247
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 70360997 GCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTTCGAGTTCTGCAGCACC 70361056
Query 248 CAGAG 252
|||||
Sbjct 70361057 CAGAG 70361061
Score = 176 bits (95), Expect = 9e-42
Identities = 145/170 (85%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 67 GATGGGGAGGGGTCGGGTGGAGCTGAAGAGGATCGAGAACAAGATCAACCGGCAGGTGAC 126
|||||||||||| | | ||| | ||| | |||||||||| | || ||| ||||||||
Sbjct 4544360 GATGGGGAGGGGCAAGATCGAGATCAAGCGCATCGAGAACACCACCAGCCGTCAGGTGAC 4544301
Query 127 GTTCGCCAAGCGCAGGAATGGCCTGCTCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGA 186
||| ||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 4544300 CTTCTGCAAGCGCCGCAATGGCCTCCTCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGA 4544241
Query 187 CGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGT 236
||||||||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct 4544240 CGCCGAGGTCGCCCTCATCGTCTTCTCCAGCCGCGGCCGCCTCTACGAGT 4544191
Score = 121 bits (65), Expect = 4e-25
Identities = 71/74 (96%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 330 AGCAATTGAAAGCTAGCCGCAATGAATACCTCAAACTGAAGGCAAGGGTTGAAAATTTAC 389
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 70362234 AGCAATTGAAATCTAGCCGCAATGAGTACCTCAAACTGAAGGCAAGGGTTGAAAATTTAC 70362293
Query 390 AACGGACTCAAAGG 403
|||||||||| |||
Sbjct 70362294 AACGGACTCAGAGG 70362307
Score = 71.3 bits (38), Expect = 5e-10
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 544 GGAACAAATGGTTTCTGAAGCAAATAGATGCCTTAGGAGAA 584
|||||||||| ||||||||||||||||||||||||||||||
Sbjct 70363046 GGAACAAATGTTTTCTGAAGCAAATAGATGCCTTAGGAGAA 70363086
> Scaffold_93;HRSCAF=1687
Length=103377072
Score = 270 bits (146), Expect = 4e-70
Identities = 172/185 (93%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 68 ATGGGGAGGGGTCGGGTGGAGCTGAAGAGGATCGAGAACAAGATCAACCGGCAGGTGACG 127
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25561351 ATGGGGAGGGGGCGGGTGGAGCTGAAGAGGATCGAGAACAAGATCAACCGGCAGGTGACC 25561410
Query 128 TTCGCCAAGCGCAGGAATGGCCTGCTCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGAC 187
|||||||||||| | | || |||| ||||||||||||||||||||||| |||||||||
Sbjct 25561411 TTCGCCAAGCGCCGCAGCGGGTTGCTGAAGAAGGCGTACGAGCTCTCCGTGCTCTGCGAC 25561470
Query 188 GCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACC 247
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 25561471 GCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCGGC 25561530
Query 248 CAGAG 252
|||||
Sbjct 25561531 CAGAG 25561535
> Scaffold_1;HRSCAF=83
Length=95187837
Score = 270 bits (146), Expect = 4e-70
Identities = 172/185 (93%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 68 ATGGGGAGGGGTCGGGTGGAGCTGAAGAGGATCGAGAACAAGATCAACCGGCAGGTGACG 127
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 40512167 ATGGGGAGGGGGAGGGTGGAGCTGAAGCGGATTGAGAACAAGATCAACCGGCAGGTGACC 40512108
Query 128 TTCGCCAAGCGCAGGAATGGCCTGCTCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGAC 187
|||||||||||| | || || ||||||||||||||||||||||||||||| |||||||||
Sbjct 40512107 TTCGCCAAGCGCCGCAACGGGCTGCTCAAGAAGGCGTACGAGCTCTCCGTGCTCTGCGAC 40512048
Query 188 GCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACC 247
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 40512047 GCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCGGC 40511988
Query 248 CAGAG 252
|||||
Sbjct 40511987 CAGAG 40511983
Score = 169 bits (91), Expect = 2e-39
Identities = 143/169 (85%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 68 ATGGGGAGGGGTCGGGTGGAGCTGAAGAGGATCGAGAACAAGATCAACCGGCAGGTGACG 127
|||||||||||| || | ||| | |||||||||||||||| || || ||| ||||||||
Sbjct 81440937 ATGGGGAGGGGTAGGATTGAGATCAAGAGGATCGAGAACACGACCAGCCGCCAGGTGACC 81440878
Query 128 TTCGCCAAGCGCAGGAATGGCCTGCTCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGAC 187
||| ||||||| | ||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 81440877 TTCTGCAAGCGCCGCAATGGGCTTCTCAAGAAGGCGTATGAGCTCTCCGTCCTCTGCGAC 81440818
Query 188 GCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGT 236
|||||||| || || ||| ||||||||| |||||| ||||||||||
Sbjct 81440817 GCCGAGGTGGCTCTGATCGTCTTCTCCAGCCGCGGTCGTCTCTACGAGT 81440769
> Scaffold_415;HRSCAF=2522
Length=105879435
Score = 239 bits (129), Expect = 1e-60
Identities = 159/174 (91%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 66 GGATGGGGAGGGGTCGGGTGGAGCTGAAGAGGATCGAGAACAAGATCAACCGGCAGGTGA 125
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 24557134 GGATGGGGAGGGGGAAGGTGGAGCTGAAGAGGATCGAGAACAAGATCAGCCGGCAGGTGA 24557193
Query 126 CGTTCGCCAAGCGCAGGAATGGCCTGCTCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCG 185
||||||||||| | ||||| || ||||||||||||||||||||||| ||||| |||||||
Sbjct 24557194 CGTTCGCCAAGAGGAGGAACGGGCTGCTCAAGAAGGCGTACGAGCTGTCCGTGCTCTGCG 24557253
Query 186 ACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCT 239
|||||||||||||||||||||||||||||| ||||||| |||| ||||||||
Sbjct 24557254 ACGCCGAGGTCGCCCTCATCATCTTCTCCAGCCGCGGCCGCCTCTTCGAGTTCT 24557307
> Scaffold_48;HRSCAF=1451
Length=118006097
Score = 213 bits (115), Expect = 7e-53
Identities = 157/178 (88%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 67 GATGGGGAGGGGTCGGGTGGAGCTGAAGAGGATCGAGAACAAGATCAACCGGCAGGTGAC 126
||||||| |||| ||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 48363656 GATGGGGCGGGGGAAGGTGGAGCTGAAGCGGATCGAGAACAAGATCAGCAGGCAGGTGAC 48363597
Query 127 GTTCGCCAAGCGCAGGAATGGCCTGCTCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGA 186
|||||||||||| ||||| || |||||||||||||||||||||||||| | ||||||||
Sbjct 48363596 GTTCGCCAAGCGGAGGAACGGGCTGCTCAAGAAGGCGTACGAGCTCTCGCTTCTCTGCGA 48363537
Query 187 CGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGC 244
|||||||||||||||||||||||||||| |||||| |||| |||||||| ||||
Sbjct 48363536 CGCCGAGGTCGCCCTCATCATCTTCTCCGGTCGCGGCCGCCTCTTCGAGTTCTCCAGC 48363479
Score = 154 bits (83), Expect = 4e-35
Identities = 127/149 (85%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 90 TGAAGAGGATCGAGAACAAGATCAACCGGCAGGTGACGTTCGCCAAGCGCAGGAATGGCC 149
||||| |||| |||||| | | ||| ||||| || ||| |||||||| | || ||||
Sbjct 44493446 TGAAGCGGATTGAGAACCCCACGAGCCGTCAGGTCACCTTCTCCAAGCGCCGCAACGGCC 44493387
Query 150 TGCTCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCT 209
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 44493386 TGCTCAAGAAGGCGTTCGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCGTCT 44493327
Query 210 TCTCCAACCGCGGCAAGCTCTACGAGTTC 238
||||| || |||||||||||||| |||
Sbjct 44493326 TCTCCCCGCGGGGCAAGCTCTACGAATTC 44493298
Score = 150 bits (81), Expect = 6e-34
Identities = 107/120 (89%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 119 CAGGTGACGTTCGCCAAGCGCAGGAATGGCCTGCTCAAGAAGGCGTACGAGCTCTCCGTC 178
||||| || ||| |||||||| | || ||||||||||||||||||| |||||||||||||
Sbjct 45689743 CAGGTCACCTTCTCCAAGCGCCGCAACGGCCTGCTCAAGAAGGCGTTCGAGCTCTCCGTC 45689802
Query 179 CTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTC 238
||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||
Sbjct 45689803 CTCTGCGACGCCGAGGTCGCCCTCATCGTCTTCTCCCCACGGGGCAAGCTCTACGAATTC 45689862
> Scaffold_1064;HRSCAF=3428
Length=111260184
Score = 159 bits (86), Expect = 9e-37
Identities = 128/149 (86%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 90 TGAAGAGGATCGAGAACAAGATCAACCGGCAGGTGACGTTCGCCAAGCGCAGGAATGGCC 149
||||| |||| |||||| || || ||| |||||||| || |||||||| | || ||||
Sbjct 11572222 TGAAGCGGATTGAGAACCCGACCAGCCGTCAGGTGACCTTTTCCAAGCGCCGCAACGGCC 11572163
Query 150 TGCTCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCT 209
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 11572162 TGCTCAAGAAGGCGTTCGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGTCCTCATCGTCT 11572103
Query 210 TCTCCAACCGCGGCAAGCTCTACGAGTTC 238
||||| || |||||||||||||| |||
Sbjct 11572102 TCTCCCCGCGGGGCAAGCTCTACGAATTC 11572074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 1313191011495
Database: zizania_palustris_13Nov2018_okGsv.fasta
Posted date: Jul 9, 2019 4:10 PM
Number of letters in database: 1,288,768,912
Number of sequences in database: 2,183
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5