Version 0.9

Added support for the new 'condensed' format of BAM files that are made by ShortStack version 4.1.0 and higher.

Version 0.8

Output format changed from post-script to PDF.
Now requires ghostscript (specifically ps2pdf) to run.
Addresses #5

Version 0.7

Adds compatibility with .csi type of BAM file indices.

Resolves issue #4

version 0.6

Fix shebang, again, for conda compatibility

Version 0.5

Updated shebang to /usr/bin/env perl in preparation for conda recipe

Version 0.4

Added switch -x , which suppresses the printing of detailed file information on the postscript file. Makes the image less cluttered.

Version 0.3

Added option -n , to place user-given names on the output.

Version 0.2

Added 'word cloud' text output to show individual reads.
tightened up handling of reads to exclude alignments with indels, introns, clipping, or padding.