Papers

Paper pages

The layout

The entire page has two columns. The narrower one on the left holds an image for the paper (typically just the journal cover, but eventually we may switch to using figures) and metadata.

In the wide right hand column, the paper title and citation (with authors in the lab automatically linked to their member pages) show up at the top of the page. To the right of the title, we have an altmetric donut as long as the paper has a DOI. Below the title, donut, and citation is a horizontal rule separating these elements from the rest of the page. Below the break, there is the page's content. Typically we include the abstract from the paper.

The code

The header

• layout: paper
• title: The title of the paper.
  • e.g., title: Cooperating yet distinct brain networks engaged during naturalistic paradigms: A meta-analysis of functional MRI results
• year: The year of publication for the paper.
• shortref: The shortened reference for the paper.
  • This could probably be automatically compiled from the fields authors, journal, and year.
  • e.g., shortref: "Bottenhorn <i>et al. bioRxiv</i> 2017"
• nickname: A unique identifier for the paper. Typically, we use the date and name used for the file.
  • e.g., nickname: 2017-07-19-bottenhorn-naturalistic-preprint
• journal: The journal in which the paper was published. Also can be a preprint archive.
• volume: Currently unused.
• issue: Currently unused.
• pages: Currently unused.
• authors: A comma-separated string list of the "science names" (see the members pages specification for details) of the authors of the paper.
  • Hyperlinks will be created for any authors whose science names match up to members of the lab. The others are left as standard strings.
  • Perhaps we can create some kind of "common collaborators" list somewhere to link other author names to external sites?
  • e.g., authors: "Bottenhorn KL, Flannery JS, Boeving ER, Riedel MC, Eickhoff SB, Sutherland MT, Laird AR"
• image: The path to a logo or picture for the paper. Typically we just use a low resolution (width=250px) png of the journal's cover.
  • e.g., image: /assets/images/papers/2017-07-19-bottenhorn-naturalistic-preprint.png
• redirect_from: Not sure what this does.
• fulltext: A link to the journal's HTML page containing (or linking to) the full text of the paper.
  • e.g., fulltext: http://www.biorxiv.org/content/early/2017/07/19/165951
• pdf: Currently unused. Would be a link to the pdf of the paper if we hosted it ourselves.
• pdflink: A link to the journal's pdf of the paper.
  • e.g., pdflink: http://www.biorxiv.org/content/biorxiv/early/2017/07/19/165951.full.pdf
• pmid:
• pmcid:
• f1000:
• doi:
• github: A link to the GitHub repository associated with the paper.
• dryad_doi:
• figshare_doi:
• category: Always papers.
• published: Whether the paper has been published. Either true or false.
  • This may be unnecessary.
• embargo: Whether the paper is embargoed (I guess). Either true or false.
  • This may be unnecessary.
• peerreview: Whether the paper is a peer review or not (I guess). Either true or false.
  • This is probably unnecessary. If we want to indicate this, we might as well use a tag instead.
• review: Whether the paper is a literature review or not (I guess). Either true or false.
  • This is probably unnecessary. If we want to indicate this, we might as well use a tag instead.
• projects: A list of the projects this paper is related to. Use the project handle.
  • e.g., projects: [physics-learning]
• tags: A list of relevant metadata tags for the project.
  • The tags preprint, correspondence, and chapter will show up before the title of the paper on the homepage, the Papers page, and the paper's page.
  • e.g., tags: [preprint, meta-analysis]

Content

Typically we include the abstract for the paper.