Move parse_tracers file from physics to host #506
Workflow file for this run
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| name: CI test to run the SCM with DEPHY v1 data | |
| on: [pull_request,workflow_dispatch] | |
| jobs: | |
| run-scm-DEPHY: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| fortran-compiler: [gfortran-12] | |
| build-type: [Release, Debug] | |
| py-version: [3.7.13] | |
| # Environmental variables | |
| env: | |
| NFHOME: /home/runner/netcdf-fortran | |
| NFVERSION: v4.5.3 | |
| bacio_ROOT: /home/runner/bacio | |
| sp_ROOT: /home/runner/NCEPLIBS-sp | |
| w3emc_ROOT: /home/runner/myw3emc | |
| SCM_ROOT: /home/runner/work/ccpp-scm/ccpp-scm | |
| suites: SCM_GFS_v16,SCM_GFS_v16_ps | |
| # Workflow steps | |
| steps: | |
| ####################################################################################### | |
| # Initial | |
| ####################################################################################### | |
| - name: Checkout SCM code (into /home/runner/work/ccpp-scm/) | |
| uses: actions/checkout@v4 | |
| - name: Initialize submodules | |
| run: git submodule update --init --recursive | |
| ####################################################################################### | |
| # Python setup | |
| ####################################################################################### | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{matrix.py-version}} | |
| - name: Add conda to system path | |
| run: | | |
| echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Install NetCDF Python libraries | |
| run: | | |
| conda install --yes -c conda-forge h5py>=3.4 netCDF4 f90nml | |
| - name: Update system packages | |
| run: sudo apt-get update | |
| ####################################################################################### | |
| # Install FORTRAN dependencies | |
| ####################################################################################### | |
| - name: Install openmpi | |
| run: | | |
| wget https://github.com/open-mpi/ompi/archive/refs/tags/v4.1.6.tar.gz | |
| tar -xvf v4.1.6.tar.gz | |
| cd ompi-4.1.6 | |
| ./autogen.pl | |
| ./configure --prefix=/home/runner/ompi-4.1.6 | |
| make -j4 | |
| make install | |
| echo "LD_LIBRARY_PATH=/home/runner/ompi-4.1.6/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV | |
| echo "PATH=/home/runner/ompi-4.1.6/bin:$PATH" >> $GITHUB_ENV | |
| - name: Cache bacio library v2.4.1 | |
| id: cache-bacio-fortran | |
| uses: actions/cache@v4 | |
| with: | |
| path: /home/runner/bacio | |
| key: cache-bacio-fortran-${{matrix.fortran-compiler}}-key | |
| - name: Install bacio library v2.4.1 | |
| if: steps.cache-bacio-fortran.outputs.cache-hit != 'true' | |
| run: | | |
| git clone --branch v2.4.1 https://github.com/NOAA-EMC/NCEPLIBS-bacio.git bacio | |
| cd bacio && mkdir build && cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=${bacio_ROOT} ../ | |
| make -j2 | |
| make install | |
| echo "bacio_DIR=/home/runner/bacio/lib/cmake/bacio" >> $GITHUB_ENV | |
| - name: Cache SP-library v2.3.3 | |
| id: cache-sp-fortran | |
| uses: actions/cache@v4 | |
| with: | |
| path: /home/runner/NCEPLIBS-sp | |
| key: cache-sp-fortran-${{matrix.fortran-compiler}}-key | |
| - name: Install SP-library v2.3.3 | |
| if: steps.cache-sp-fortran.outputs.cache-hit != 'true' | |
| run: | | |
| git clone --branch v2.3.3 https://github.com/NOAA-EMC/NCEPLIBS-sp.git NCEPLIBS-sp | |
| cd NCEPLIBS-sp && mkdir build && cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=${sp_ROOT} ../ | |
| make -j2 | |
| make install | |
| echo "sp_DIR=/home/runner/NCEPLIBS-sp/lib/cmake/sp" >> $GITHUB_ENV | |
| - name: Cache w3emc library v2.9.2 | |
| id: cache-w3emc-fortran | |
| uses: actions/cache@v4 | |
| with: | |
| path: /home/runner/myw3emc | |
| key: cache-w3emc-fortran-${{matrix.fortran-compiler}}-key | |
| - name: Install w3emc library v2.9.2 | |
| if: steps.cache-w3emc-fortran.outputs.cache-hit != 'true' | |
| run: | | |
| git clone --branch v2.9.2 https://github.com/NOAA-EMC/NCEPLIBS-w3emc.git NCEPLIBS-w3emc | |
| cd NCEPLIBS-w3emc && mkdir build && cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=${w3emc_ROOT} ../ | |
| make -j2 | |
| make install | |
| echo "w3emc_DIR=/home/runner/myw3emc/lib/cmake/w3emc" >> $GITHUB_ENV | |
| - name: Install NetCDF C library | |
| run: sudo apt-get install libnetcdf-dev | |
| - name: Cache NetCDF Fortran library v4.4.4 | |
| id: cache-netcdf-fortran | |
| uses: actions/cache@v4 | |
| with: | |
| path: /home/runner/netcdf-fortran | |
| key: cache-netcdf-fortran-${{matrix.fortran-compiler}}-key | |
| - name: Install NetCDF Fortran library | |
| if: steps.cache-netcdf-fortran.outputs.cache-hit != 'true' | |
| run: | | |
| git clone --branch ${NFVERSION} https://github.com/Unidata/netcdf-fortran.git | |
| cd netcdf-fortran | |
| ./configure | |
| make -j | |
| sudo make install | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${NFHOME}/lib | |
| ####################################################################################### | |
| # Build SCM. Run DEPHYv1 case. | |
| ####################################################################################### | |
| - name: Environment for openmpi compiler | |
| run: | | |
| echo "FC=mpif90" >> $GITHUB_ENV | |
| echo "CC=mpicc" >> $GITHUB_ENV | |
| - name: Download data for SCM | |
| run: | | |
| cd ${SCM_ROOT} | |
| ./contrib/get_all_static_data.sh | |
| ./contrib/get_thompson_tables.sh | |
| - name: Configure build with CMake (Release) | |
| if: contains(matrix.build-type, 'Release') | |
| run: | | |
| cd ${SCM_ROOT}/scm | |
| mkdir bin && cd bin | |
| cmake -DCCPP_SUITES=${suites} ../src | |
| - name: Configure build with CMake (Debug) | |
| if: contains(matrix.build-type, 'Debug') | |
| run: | | |
| cd ${SCM_ROOT}/scm | |
| mkdir bin && cd bin | |
| cmake -DCCPP_SUITES=${suites} -DCMAKE_BUILD_TYPE=Debug ../src | |
| - name: Build SCM | |
| run: | | |
| cd ${SCM_ROOT}/scm/bin | |
| make -j4 | |
| - name: Clone GdR-DEPHY/DEPHY-SCM repository | |
| run: | | |
| cd /home/runner | |
| git clone https://github.com/GdR-DEPHY/DEPHY-SCM.git DEPHY-SCM | |
| - name: Run SCM with MAGIC_LEG04A DEPHY reference case | |
| run: | | |
| cd ${SCM_ROOT}/scm/bin | |
| ./run_scm.py -c MAGIC_LEG04A --case_data_dir /home/runner/DEPHY-SCM/MAGIC/LEG04A --runtime_mult 0.1 -v |