diff --git a/docs/_Software-Development/02-toolsurvey.md b/docs/_Software-Development/02-toolsurvey.md index 16f654e8..209258b7 100644 --- a/docs/_Software-Development/02-toolsurvey.md +++ b/docs/_Software-Development/02-toolsurvey.md @@ -16,7 +16,7 @@ Assessing the quality of metagenome-derived genome bins using machine learning operating system: Linux -license: GNU +license: [GPL 3.0](https://opensource.org/license/gpl-3-0/) link: [https://github.com/chklovski/CheckM2](https://github.com/chklovski/CheckM2) @@ -26,7 +26,7 @@ Fast genome-wide functional annotation through orthology assignment operating system: Linux, MacOS, Windows -license: GNU +license: [AGPL 3.0](https://opensource.org/license/agpl-v3/) link: [https://github.com/eggnogdb/eggnog-mapper](https://github.com/eggnogdb/eggnog-mapper) @@ -36,7 +36,7 @@ Python package for detection of chimerism and contamination in prokaryotic genom operating system: Linux, MacOS, Windows -license: GNU +license: [GPL 3.0](https://opensource.org/license/gpl-3-0/) link: [https://github.com/grp-bork/gunc](https://github.com/grp-bork/gunc) @@ -46,7 +46,7 @@ A computational tool that estimates relative taxonomic abundance of known and cu operating system: Linux -license: GNU +license: [GPL 3.0](https://opensource.org/license/gpl-3-0/) link: [https://github.com/motu-tool/mOTUs](https://github.com/motu-tool/mOTUs) @@ -56,7 +56,7 @@ Proteinortho is a tool to detect orthologous genes within different species. operating system: Linux, MacOS -license: GNU +license: [LGPL 3.0](https://opensource.org/license/lgpl-3-0/) link: [https://gitlab.com/paulklemm_PHD/proteinortho](https://gitlab.com/paulklemm_PHD/proteinortho) @@ -67,7 +67,7 @@ Assessment of Metagenome BinnERs operating system: Linux -license: GPL +license: [GPL 3.0](https://opensource.org/license/gpl-3-0/) link: [https://github.com/CAMI-challenge/AMBER](https://github.com/CAMI-challenge/AMBER) @@ -78,7 +78,7 @@ link: [https://github.com/CAMI-challenge/AMBER](https://github.com/CAMI-challeng operating system: Linux -license: GNU +license: [CC BY](http://creativecommons.org/licenses/by/4.0/) link: [https://bacdive.dsmz.de/](https://bacdive.dsmz.de/) @@ -98,7 +98,7 @@ Standardized cultivation media database operating system: Linux, MacOS, Windows -license: CC4 +license: [CC BY](http://creativecommons.org/licenses/by/4.0/?ref=chooser-v1) link: [https://mediadive.dsmz.de](https://mediadive.dsmz.de) @@ -109,7 +109,7 @@ BioAutoML: Automated Feature Engineering and Metalearning for Classification of operating system: Linux, MacOS -license: NA +license: [BSD3](https://opensource.org/license/bsd-3-clause/) link: [https://github.com/Bonidia/BioAutoML](https://github.com/Bonidia/BioAutoML) @@ -119,7 +119,7 @@ Model abundance distributions of microbial communities and simulate metagenome d operating system: Linux -license: Apache +license: [Apache 2](https://opensource.org/license/apache-2-0/) link: [https://github.com/CAMI-challenge/CAMISIM](https://github.com/CAMI-challenge/CAMISIM) @@ -129,7 +129,7 @@ Workflow for metaproteomics anaylysis of microbiomes operating system: Linux, Windows -license: Apache +license: [Apache 2](https://opensource.org/license/apache-2-0/) link: [https://github.com/compomics/meta-proteome-analyzer](https://github.com/compomics/meta-proteome-analyzer) @@ -143,7 +143,7 @@ It was designed to be an easy-to-use tool that outputs ready-to-use comprehensiv operating system: Linux -license: GNU +license: [GPL 3.0](https://opensource.org/license/gpl-3-0/) link: [https://github.com/mdsufz/MuDoGeR](https://github.com/mdsufz/MuDoGeR) @@ -153,7 +153,7 @@ Recover eukaryotic, prokaryotic, and viral metagenome-assembled genomes from a s operating system: Linux -license: GNU +license: [GPL 3.0](https://opensource.org/license/gpl-3-0/) link: [https://github.com/mdsufz/MuDoGeR](https://github.com/mdsufz/MuDoGeR) @@ -163,9 +163,9 @@ Flexible pipeline for annotation of ecosystem processes and prediction of putati operating system: Linux -license: CC4 +license: [CC BY](http://creativecommons.org/licenses/by/4.0/?ref=chooser-v1) -link: [https://github.com/mdsufz/OrtSuite,](https://github.com/mdsufz/OrtSuite,) +link: [https://github.com/mdsufz/OrtSuite](https://github.com/mdsufz/OrtSuite) ### PredicTF (UFZ) @@ -173,7 +173,7 @@ Tool to predict bacterial transcription factors in complex microbial communities operating system: Linux -license: CC4 +license: [CC BY](http://creativecommons.org/licenses/by/4.0/?ref=chooser-v1) link: [https://github.com/mdsufz/PredicTF](https://github.com/mdsufz/PredicTF) @@ -195,7 +195,7 @@ Best practice microbiome analysis suite operating system: Linux -license: BSD3 +license: [BSD3](https://opensource.org/license/bsd-3-clause/) link: [https://qiita.ucsd.edu/](https://qiita.ucsd.edu/) @@ -206,7 +206,7 @@ Interactive Pathways Explorer (iPath) is a web-based tool for the visualization, operating system: Linux -license: GPL +license: [GPL](https://opensource.org/license/gpl-3-0/) link: [https://pathways.embl.de/](https://pathways.embl.de/)