From adfb935cb1173037c0887ce0ef4b7a7b71c7f01d Mon Sep 17 00:00:00 2001 From: cpauvert Date: Thu, 15 Feb 2024 15:42:49 +0100 Subject: [PATCH] replace reference with their doi links fixes #107 --- docs/_Research-Data-Management/13-data-qc.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/_Research-Data-Management/13-data-qc.md b/docs/_Research-Data-Management/13-data-qc.md index 52ed79ec..125cf64e 100644 --- a/docs/_Research-Data-Management/13-data-qc.md +++ b/docs/_Research-Data-Management/13-data-qc.md @@ -170,7 +170,7 @@ Legend: - **source**: Dim. reduction embedding, negative control study - **possible reason(s)**: use raw data for tSNE/UMAP - **solution/measure**: use a significant portion of PC from the PCA as input for tSNE/UMAP -3. "The first two principle components were used to perform a tSNE" [https://www.science.org/doi/full/10.1126/science.aag3009](https://www.science.org/doi/full/10.1126/science.aag3009) +3. "The first two principle components were used to perform a tSNE" - **source**: Dim. reduction embedding, negative control study - **possible reason(s)**: use only 2 PC from the PCA for the tSNE/UMAP projection - **solution/measure**: use a significant portion of PC from the PCA as input for tSNE/UMAP @@ -188,7 +188,7 @@ Legend: - **solution/measure**: use a population size cutoff or state the number 2. some genes look like dates (1-Mar,...) - **source**: seurat/deseq, negative control study -- **possible reason(s)**: some genes can be interpreted as dates when using excel for data handling [https://www.science.org/doi/10.1126/science.aah4573](https://www.science.org/doi/10.1126/science.aah4573) +- **possible reason(s)**: some genes can be interpreted as dates when using excel for data handling - **solution/measure**: never ever use excel or at least make sure that cell type is not "AUTO" # Further resources