diff --git a/.github/workflows/bench.yml b/.github/workflows/bench.yml index 0b8bf8b6..9ccd10ee 100644 --- a/.github/workflows/bench.yml +++ b/.github/workflows/bench.yml @@ -24,11 +24,11 @@ jobs: virtualenvs-create: false installer-parallel: true - name: Install dependencies - run: poetry install --no-interaction --no-root --with test ${{ inputs.poetry-extras }} + run: poetry install --no-interaction --no-root --with test -E nnpdf - name: Install project # it is required to repeat extras, otherwise they will be removed from # the environment - run: poetry install --no-interaction ${{ inputs.poetry-extras }} + run: poetry install --no-interaction -E nnpdf - name: Install task runner run: pip install poethepoet - name: Lint with pylint diff --git a/.github/workflows/unittests.yml b/.github/workflows/unittests.yml index f01c4ecd..6c535279 100644 --- a/.github/workflows/unittests.yml +++ b/.github/workflows/unittests.yml @@ -6,8 +6,9 @@ jobs: test: strategy: matrix: - python-version: ["3.8", "3.9", "3.10"] + python-version: ["3.9", "3.10", "3.11", "3.12"] uses: NNPDF/workflows/.github/workflows/python-poetry-tests.yml@v2 with: python-version: ${{ matrix.python-version }} + poetry-extras: "-E nnpdf" diff --git a/docs/source/overview/prerequisites.rst b/docs/source/overview/prerequisites.rst index d47f206d..1718f41b 100644 --- a/docs/source/overview/prerequisites.rst +++ b/docs/source/overview/prerequisites.rst @@ -12,9 +12,11 @@ This is a standard example: :: + [general] + nnpdf = true + [paths] # inputs - ymldb = "data/yamldb" grids = "data/grids" theory_cards = "data/theory_cards" operator_card_template_name = "_template.yaml" @@ -30,10 +32,24 @@ This is a standard example: All the relevant inputs are described below. The command ``pineko scaffold new`` will generate all necessary folders. -*ymldb* -------- +nnpdf +----- +The key ``nnpdf`` tells ``pineko`` it should use the data files from NNPDF to map datasets to FK Tables. +If this key is given, a valid installation of ``nnpdf`` needs to be available as well. +i.e, ``pineko`` should be installed with the ``nnpdf`` extra (``pip install pineko[nnpdf]``). + +Alternatively, it is possible not to set this key (or set it to false) and instead +provide a path with ``yaml`` files containing such dataset-FK mapping. +If a custom database of mappings is to be used, the path to the folder containing +this files needs to be explicitly provided: + +:: -You need all files of the *ymldb* [2]_ which define the mapping from datasets to FK tables. + [paths] + ymldb = "data/yamldb" + +These `yaml` files (which should be named `.yaml`) +define a mapping from datasets to FK tables. An actual (rather simple) example is the following: :: @@ -51,7 +67,7 @@ can be used (for instance ``ratio``). Theory Runcards --------------- -You need to provide the necessary theory runcards named with their respective theory ID inside the *paths.theory_cards* folder [3]_. +You need to provide the necessary theory runcards named with their respective theory ID inside the *paths.theory_cards* folder [1]_. For more details about theory runcards you can look at https://eko.readthedocs.io/en/latest/code/IO.html under **Theory Runcards**. Default Operator Card @@ -122,6 +138,4 @@ There are typically two ways to obtain grids: Notes ----- -.. [2] this is to be replaced by the new CommonData format implemented by NNPDF - -.. [3] this is to be replaced by a binding to the NNPDF theory objects +.. 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"^0.6.2" -pylint = "^2.11.1" -banana-hep = "^0.6.11" +pylint = "^3.1.0" +banana-hep = "^0.6.13" [tool.poetry.group.dev.dependencies] pdbpp = "^0.10.3" @@ -57,6 +60,7 @@ ipython = "^8.0" [tool.poetry.extras] docs = ["sphinx", "sphinx-rtd-theme", "sphinxcontrib-bibtex"] +nnpdf = ["nnpdf", "lhapdf-management"] [tool.poetry.scripts] pineko = "pineko:command" diff --git a/src/pineko/configs.py b/src/pineko/configs.py index 99ff0e96..90eec3a4 100644 --- a/src/pineko/configs.py +++ b/src/pineko/configs.py @@ -13,7 +13,6 @@ "Holds loaded configurations" NEEDED_KEYS = [ - "ymldb", "operator_cards", "grids", "operator_card_template_name", @@ -23,6 +22,7 @@ ] NEEDED_FILES = ["operator_card_template_name"] +GENERIC_OPTIONS = "general" def defaults(base_configs): @@ -59,8 +59,22 @@ def enhance_paths(configs_): configs_ : dict configuration """ + required_keys = list(NEEDED_KEYS) + # Check that one of nnpdf / ymldb is given + generic_options = configs_.get(GENERIC_OPTIONS, {}) + if generic_options.get("nnpdf", False): + # Fail as soon as possible + try: + import validphys + except ModuleNotFoundError: + raise ModuleNotFoundError( + "Cannot use `nnpdf=True` without a valid installation of NNPDF" + ) + else: + required_keys.append("ymldb") + # required keys without default - for key in NEEDED_KEYS: + for key in required_keys: if key not in configs_["paths"]: raise ValueError(f"Configuration is missing a 'paths.{key}' key") if key in NEEDED_FILES: diff --git a/src/pineko/fonll.py b/src/pineko/fonll.py index 3e3824e3..f2d66464 100644 --- a/src/pineko/fonll.py +++ b/src/pineko/fonll.py @@ -12,6 +12,7 @@ import yaml from . import configs, parser, theory_card +from .utils import read_grids_from_nnpdf logger = logging.getLogger(__name__) @@ -44,6 +45,20 @@ class InconsistentInputsError(Exception): """Raised if the inputs are not consistent with FONLL.""" +def _json_theory_read(theory_info): + """Read the theory info from a pineappl grid. + + Theory information within pineappl grids might not be saved in a consistent + json-compatible way. This functions corrects some found problems. + """ + try: + ret = json.loads(theory_info) + except json.decoder.JSONDecodeError: + # Some grids have the theories saved with incompatible formats + ret = json.loads(theory_info.replace("'", '"').replace("True", "true")) + return ret + + class FONLLInfo: """Class containing all the information for FONLL predictions.""" @@ -97,7 +112,11 @@ def dataset_name(self): @property def theorycard_no_fns_pto(self): """Return the common theory info between the different FONLL FK tables.""" - theorycards = [json.loads(self.fks[p].key_values()["theory"]) for p in self.fks] + theorycards = [] + for pinefk in self.fks.values(): + thinfo = pinefk.key_values()["theory"] + theorycards.append(_json_theory_read(thinfo)) + # Only these should differ for card in theorycards: del card["FNS"] @@ -122,11 +141,12 @@ def Q2grid(self): def update_fk_theorycard(combined_fk, input_theorycard_path): """Update theorycard entries for the combined FK table. - Update by reading the yamldb of the original theory. + Update by reading the yaml file of the original theory. """ with open(input_theorycard_path, encoding="utf-8") as f: final_theorycard = yaml.safe_load(f) - theorycard = json.loads(combined_fk.key_values()["theory"]) + + theorycard = _json_theory_read(combined_fk.key_values()["theory"]) theorycard["FNS"] = final_theorycard["FNS"] theorycard["PTO"] = final_theorycard["PTO"] theorycard["NfFF"] = final_theorycard["NfFF"] @@ -228,8 +248,12 @@ def assembly_combined_fk( else: tcard["DAMPPOWERb"] = 0 tcard["DAMPPOWERc"] = 0 + # Getting the paths to the grids - grids_name = grids_names(configs.configs["paths"]["ymldb"] / f"{dataset}.yaml") + grids_name = read_grids_from_nnpdf(dataset, configs.configs) + if grids_name is None: + grids_name = grids_names(configs.configs["paths"]["ymldb"] / f"{dataset}.yaml") + for grid in grids_name: # Checking if it already exists new_fk_path = configs.configs["paths"]["fktables"] / str(theoryid) / grid diff --git a/src/pineko/theory.py b/src/pineko/theory.py index 79b8f348..5a5af4c4 100644 --- a/src/pineko/theory.py +++ b/src/pineko/theory.py @@ -18,6 +18,7 @@ from eko.runner.managed import solve from . import check, configs, evolve, parser, scale_variations, theory_card +from .utils import read_grids_from_nnpdf logger = logging.getLogger(__name__) @@ -116,12 +117,18 @@ def load_grids(self, ds): grids : dict mapping basename to path """ - paths = configs.configs["paths"] - _info, grids = parser.get_yaml_information( - paths["ymldb"] / f"{ds}.yaml", self.grids_path() - ) - # the list is still nested, so flatten - grids = [grid for opgrids in grids for grid in opgrids] + # Take fktable information from NNPDF + raw_grids = read_grids_from_nnpdf(ds, configs.configs) + if raw_grids is not None: + grids = [self.grids_path() / i for i in raw_grids] + else: + paths = configs.configs["paths"] + _info, raw_grids = parser.get_yaml_information( + paths["ymldb"] / f"{ds}.yaml", self.grids_path() + ) + # the list is still nested, so flatten + grids = [grid for opgrids in raw_grids for grid in opgrids] + # then turn into a map name -> path grids = {grid.stem.rsplit(".", 1)[0]: grid for grid in grids} return grids diff --git a/src/pineko/utils.py b/src/pineko/utils.py new file mode 100644 index 00000000..f40f2919 --- /dev/null +++ b/src/pineko/utils.py @@ -0,0 +1,35 @@ +"""Shared utilities for pineko. + +Common tools typically used by several pineko functions. +""" + +from .configs import GENERIC_OPTIONS + + +def read_grids_from_nnpdf(dataset_name, configs=None): + """Read the list of fktables given a dataset name. + + If NNPDF is not available, returns None. + + Parameters + ---------- + dataset_name: str + configs: dict + dictionary of configuration options + if None it it assumed that the NNPDF version is required + """ + if configs is not None: + if not configs.get(GENERIC_OPTIONS, {}).get("nnpdf", False): + return None + + # Import NNPDF only if we really want it! + from nnpdf_data import legacy_to_new_map + from validphys.commondataparser import EXT + from validphys.loader import Loader + + # We only need the metadata, so this should be enough + dataset_name, variant = legacy_to_new_map(dataset_name) + cd = Loader().check_commondata(dataset_name, variant=variant) + fks = cd.metadata.theory.FK_tables + # Return it flat + return [f"{i}.{EXT}" for operand in fks for i in operand] diff --git a/tests/test_utils.py b/tests/test_utils.py new file mode 100644 index 00000000..99349d94 --- /dev/null +++ b/tests/test_utils.py @@ -0,0 +1,16 @@ +import pytest + +from pineko import utils + + +@pytest.mark.parametrize( + "dsname", ["HERA_NC_318GEV_EAVG_CHARM-SIGMARED", "ATLAS_DY_7TEV_46FB_CC"] +) +def test_nnpdf_grids(dsname): + """Checks that the grids can be read out from the NNPDF theory metadata.""" + grids = utils.read_grids_from_nnpdf(dsname) + # Check that we get _something_ + assert len(grids) > 0 + # And that they look like pineappl grids + for grid_name in grids: + grid_name.endswith(".pineappl.lz4")