.gitignore

# Ignore all compiled files
#--------------------------
__pycache__
*.pyc
*.[aox]
*.mod
*.sw[a-p]
._*
.DS_Store
#nohup.out - some users do not want this to be a part of .gitignore.  TODO: review against best practices
.idea/
.vscode/
nohup.out

# Ignore editor generated backup files
#-------------------------------------
*~
# Ignore folders
#-------------------
exec/
build*/
install*/

# Ignore fix directory symlinks
#------------------------------
fix/0readme
fix/aer
fix/am
fix/chem
fix/cice
fix/cpl
fix/datm
fix/gdas
fix/gsi
fix/lut
fix/mom6
fix/orog
fix/orog_nest
fix/sfc_climo
fix/ugwd
fix/ugwd_nest
fix/verif
fix/wave

# Ignore parm file symlinks
#--------------------------
parm/gdas/aero
parm/gdas/atm
parm/gdas/io
parm/gdas/ioda
parm/gdas/snow
parm/gdas/soca
parm/gdas/jcb-gdas
parm/gdas/jcb-algorithms
parm/monitor
parm/post/nam_micro_lookup.dat
parm/post/optics_luts_DUST.dat
parm/post/optics_luts_DUST_nasa.dat
parm/post/optics_luts_NITR_nasa.dat
parm/post/optics_luts_SALT.dat
parm/post/optics_luts_SALT_nasa.dat
parm/post/optics_luts_SOOT.dat
parm/post/optics_luts_SOOT_nasa.dat
parm/post/optics_luts_SUSO.dat
parm/post/optics_luts_SUSO_nasa.dat
parm/post/optics_luts_WASO.dat
parm/post/optics_luts_WASO_nasa.dat
parm/post/params_grib2_tbl_new
parm/post/post_tag_gfs128
parm/post/gfs
parm/post/gefs
parm/post/sfs
parm/post/ocean.csv
parm/post/ice.csv
parm/post/ocnicepost.nml.jinja2
parm/ufs/noahmptable.tbl
parm/ufs/model_configure.IN
parm/ufs/input_global_nest.nml.IN
parm/ufs/MOM_input_*.IN
parm/ufs/MOM6_data_table.IN
parm/ufs/ice_in.IN
parm/ufs/ufs.configure.*.IN
parm/ufs/post_itag_gfs
parm/wafs

# Ignore sorc and logs folders from externals
#--------------------------------------------
sorc/*log
sorc/logs
sorc/calc_analysis.fd
sorc/calc_increment_ens.fd
sorc/calc_increment_ens_ncio.fd
sorc/emcsfc_ice_blend.fd
sorc/emcsfc_snow2mdl.fd
sorc/enkf.fd
sorc/enkf_chgres_recenter_nc.fd
sorc/fbwndgfs.fd
sorc/gaussian_sfcanl.fd
sorc/getsfcensmeanp.fd
sorc/getsigensmeanp_smooth.fd
sorc/getsigensstatp.fd
sorc/gfs_bufr.fd
sorc/global_cycle.fd
sorc/gsi.fd
sorc/interp_inc.fd
sorc/mkgfsawps.fd
sorc/overgridid.fd
sorc/oznmon_horiz.fd
sorc/oznmon_time.fd
sorc/radmon_angle.fd
sorc/radmon_bcoef.fd
sorc/radmon_bcor.fd
sorc/radmon_time.fd
sorc/rdbfmsua.fd
sorc/recentersigp.fd
sorc/supvit.fd
sorc/syndat_getjtbul.fd
sorc/syndat_maksynrc.fd
sorc/syndat_qctropcy.fd
sorc/tave.fd
sorc/tocsbufr.fd
sorc/upp.fd
sorc/vint.fd
sorc/webtitle.fd
sorc/ocnicepost.fd

# Ignore scripts from externals
#------------------------------
# jobs symlinks
# scripts symlinks
scripts/exemcsfc_global_sfc_prep.sh
scripts/exgdas_global_marine_analysis_ecen.py
scripts/exglobal_prep_ocean_obs.py
# ush symlinks
ush/bufr2ioda_insitu_profile_argo.py
ush/bufr2ioda_insitu_profile_bathy.py
ush/bufr2ioda_insitu_profile_glider.py
ush/bufr2ioda_insitu_profile_marinemammal.py
ush/bufr2ioda_insitu_profile_tesac.py
ush/bufr2ioda_insitu_profile_xbtctd.py
ush/bufr2ioda_insitu_surface_altkob.py
ush/bufr2ioda_insitu_surface_trkob.py
ush/chgres_cube.sh
ush/emcsfc_ice_blend.sh
ush/emcsfc_snow.sh
ush/fix_precip.sh
ush/fv3gfs_driver_grid.sh
ush/fv3gfs_filter_topo.sh
ush/fv3gfs_make_grid.sh
ush/fv3gfs_make_orog.sh
ush/gen_bufr2ioda_json.py
ush/gen_bufr2ioda_yaml.py
ush/bufr2ioda_insitu_profile*.py
ush/bufr2ioda_insitu_surface*.py
ush/global_chgres.sh
ush/global_chgres_driver.sh
ush/global_cycle.sh
ush/global_cycle_driver.sh
ush/jediinc2fv3.py
ush/ufsda
ush/soca
ush/make_NTC_file.pl
ush/make_ntc_bull.pl
ush/make_tif.sh
ush/month_name.sh
ush/imsfv3_scf2ioda.py
ush/atparse.bash
ush/run_bufr2ioda.py
ush/bufr2ioda_insitu*

# version files
versions/build.ver
versions/run.ver

# jcb checkout and symlinks
ush/python/jcb
workflow/jcb
ci/scripts/jcb