diff --git a/DESCRIPTION b/DESCRIPTION
index a2c1af96..77e362ac 100755
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
Package: CausalGPS
Type: Package
Title: Matching on Generalized Propensity Scores with Continuous Exposures
-Version: 0.4.1
+Version: 0.4.1.9000
Authors@R: c(
person("Naeem", "Khoshnevis", email = "nkhoshnevis@g.harvard.edu",
role=c("aut","cre"),
diff --git a/NEWS.md b/NEWS.md
index 38aaadf0..0987f00e 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,3 +1,6 @@
+## CausalGPS (Developing)
+
+
## CausalGPS 0.4.1 (2023-09-29)
### Added
diff --git a/cran-comments.md b/cran-comments.md
deleted file mode 100644
index 29d39238..00000000
--- a/cran-comments.md
+++ /dev/null
@@ -1,68 +0,0 @@
-Re-Submission (September 29, 2023)
-
-Thank you for your insightful feedback. We've carefully reviewed the discussions on R-package-devel and recognize that one of our dependencies, wCorr, may potentially utilize multiple cores. To address this, we've constrained the tests associated with that dependency. It’s important to note, however, that we conduct thorough testing of the package both locally and via rhub, all of which have been successful.
-
-Best regards,
-Naeem Khoshnevis
-Research Computing and Data Services
-Harvard University
-
-
-Re-Submission (September 29, 2023)
-
-Thank you for your feedback. We have reviewed the discussions on R-package-devel and acknowledge that data.table may utilize multiple threads at certain instances. To address this, we have incorporated additional code to constrain data.table to a single thread during CRAN tests. We hope that this modification resolves the issue.
-
-Best regards,
-Naeem Khoshnevis
-Research Computing and Data Services
-Harvard University
-
-
-Re-Submission (September 29, 2023)
-
-Thank you for your feedback. We have adjusted the package to skip the computationally intensive tests during CRAN checks due to the issues observed in one of the operating systems. We would like to kindly request acceptance of the package with this note, as the noted concern is specific to a single OS.
-
-Best regards,
-Naeem Khoshnevis
-Research Computing and Data Services
-Harvard University
-
-
-Re-Submission (September 29, 2023)
-
-Thank you for your feedback and observations. In response, and as part of this revised submission, we have instituted several modifications to address the raised concerns:
-- We have eliminated an additional vignette that required extensive computation.
-- We have relocated several examples to the `\donttest{}` block to avoid their execution during CRAN checks.
-- Some of the more computationally demanding tests have been configured to skip execution during CRAN checks.
-
-We are optimistic that these alterations will rectify the identified issues. Regrettably, we encounter limitations in verifying the resolutions directly, as attempts to reproduce the said issues both locally and during an `rhub` check were unsuccessful – all tests and checks passed without discrepancies. We appreciate your understanding and look forward to any further guidance or suggestions you might have.
-
-Best regards,
-Naeem Khoshnevis
-Research Computing and Data Services
-Harvard University
-
-
-Re-Submission (September 29, 2023)
-
-Thank you for the notes. We have removed the computationally intensive vignette and also moved examples to the donttest block. We hope these changes resolve the issues. Unfortunately, we are unable to reproduce them locally or during an rhub check (as they pass successfully), so we could not verify the resolution directly.
-
-Best regards,
-Naeem Khoshnevis
-Research Computing and Data Services
-Harvard University
-
-Submission (September 29, 2023)
-
-Thank you so much for taking the time and reviewing the CausalGPS 0.4.1 package. In this version upgrade we:
-
-- Added more details to the plots.
-- Removed unnecessary outcome input in the design stage.
-- Addressed raised notes from CRAN on v0.4.0.
-
-The package tested locally and on rhub and passed all tests and checks successfully.
-
-Best regards,
-Naeem Khoshnevis
-Research Computing and Data Services
-Harvard University
diff --git a/docs/404.html b/docs/404.html
index a8a5db46..644b27a2 100644
--- a/docs/404.html
+++ b/docs/404.html
@@ -24,7 +24,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/CODE_OF_CONDUCT.html b/docs/CODE_OF_CONDUCT.html
index e8c3e338..50c79264 100644
--- a/docs/CODE_OF_CONDUCT.html
+++ b/docs/CODE_OF_CONDUCT.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/articles/CausalGPS.html b/docs/articles/CausalGPS.html
index 2f83d2d1..8418c539 100644
--- a/docs/articles/CausalGPS.html
+++ b/docs/articles/CausalGPS.html
@@ -26,7 +26,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/articles/Developers-Guide.html b/docs/articles/Developers-Guide.html
index c62dc7e6..a2fa141a 100644
--- a/docs/articles/Developers-Guide.html
+++ b/docs/articles/Developers-Guide.html
@@ -26,7 +26,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/articles/Estimating-GPS.html b/docs/articles/Estimating-GPS.html
index bc82ad47..944f7a74 100644
--- a/docs/articles/Estimating-GPS.html
+++ b/docs/articles/Estimating-GPS.html
@@ -26,7 +26,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/articles/Frequently-Asked-Questions.html b/docs/articles/Frequently-Asked-Questions.html
index dea975e4..29ab0d4a 100644
--- a/docs/articles/Frequently-Asked-Questions.html
+++ b/docs/articles/Frequently-Asked-Questions.html
@@ -26,7 +26,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/articles/Generating-Pseudo-Population.html b/docs/articles/Generating-Pseudo-Population.html
index 6fa7c46b..fca07135 100644
--- a/docs/articles/Generating-Pseudo-Population.html
+++ b/docs/articles/Generating-Pseudo-Population.html
@@ -26,7 +26,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/articles/Generating-Synthetic-Data.html b/docs/articles/Generating-Synthetic-Data.html
index 1d42b7e7..140a1dd3 100644
--- a/docs/articles/Generating-Synthetic-Data.html
+++ b/docs/articles/Generating-Synthetic-Data.html
@@ -26,7 +26,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/articles/Notes-on-SL-Wrapper.html b/docs/articles/Notes-on-SL-Wrapper.html
index f9d84cb6..dac8d714 100644
--- a/docs/articles/Notes-on-SL-Wrapper.html
+++ b/docs/articles/Notes-on-SL-Wrapper.html
@@ -26,7 +26,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/articles/Outcome-Models.html b/docs/articles/Outcome-Models.html
index f140ff76..6a525420 100644
--- a/docs/articles/Outcome-Models.html
+++ b/docs/articles/Outcome-Models.html
@@ -26,7 +26,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/articles/Singularity-Image.html b/docs/articles/Singularity-Image.html
index 8f5fed56..a7d4f955 100644
--- a/docs/articles/Singularity-Image.html
+++ b/docs/articles/Singularity-Image.html
@@ -26,7 +26,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/articles/Testing-the-Package.html b/docs/articles/Testing-the-Package.html
index b34e0bab..ecb0ac22 100644
--- a/docs/articles/Testing-the-Package.html
+++ b/docs/articles/Testing-the-Package.html
@@ -26,7 +26,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/articles/index.html b/docs/articles/index.html
index 77389cb9..96860276 100644
--- a/docs/articles/index.html
+++ b/docs/articles/index.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/authors.html b/docs/authors.html
index 19e00055..c414a30a 100644
--- a/docs/authors.html
+++ b/docs/authors.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/index.html b/docs/index.html
index 63f36eed..7a872a6f 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -36,7 +36,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/news/index.html b/docs/news/index.html
index 29c6d26e..dd30ef96 100644
--- a/docs/news/index.html
+++ b/docs/news/index.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
index 72ddc50e..089cb5ef 100644
--- a/docs/pkgdown.yml
+++ b/docs/pkgdown.yml
@@ -12,7 +12,7 @@ articles:
Outcome-Models: Outcome-Models.html
Singularity-Image: Singularity-Image.html
Testing-the-Package: Testing-the-Package.html
-last_built: 2023-09-29T13:38Z
+last_built: 2023-09-30T00:06Z
urls:
reference: https://NSAPH-Software.github.io/CausalGPS/reference
article: https://NSAPH-Software.github.io/CausalGPS/articles
diff --git a/docs/reference/CausalGPS-package.html b/docs/reference/CausalGPS-package.html
index 3c286d51..ddb8a90f 100644
--- a/docs/reference/CausalGPS-package.html
+++ b/docs/reference/CausalGPS-package.html
@@ -12,7 +12,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/absolute_corr_fun.html b/docs/reference/absolute_corr_fun.html
index a5559478..f44daa15 100644
--- a/docs/reference/absolute_corr_fun.html
+++ b/docs/reference/absolute_corr_fun.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/absolute_weighted_corr_fun.html b/docs/reference/absolute_weighted_corr_fun.html
index 61aa0dce..255633db 100644
--- a/docs/reference/absolute_weighted_corr_fun.html
+++ b/docs/reference/absolute_weighted_corr_fun.html
@@ -12,7 +12,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/autoplot.gpsm_erf.html b/docs/reference/autoplot.gpsm_erf.html
index f59d63f4..a9c2c82a 100644
--- a/docs/reference/autoplot.gpsm_erf.html
+++ b/docs/reference/autoplot.gpsm_erf.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/autoplot.gpsm_pspop.html b/docs/reference/autoplot.gpsm_pspop.html
index f02d7eb0..534e5802 100644
--- a/docs/reference/autoplot.gpsm_pspop.html
+++ b/docs/reference/autoplot.gpsm_pspop.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/check_args.html b/docs/reference/check_args.html
index 95cccc4d..c2a9e343 100644
--- a/docs/reference/check_args.html
+++ b/docs/reference/check_args.html
@@ -12,7 +12,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/check_args_compile_pseudo_pop.html b/docs/reference/check_args_compile_pseudo_pop.html
index 3a888a61..a0440cd0 100644
--- a/docs/reference/check_args_compile_pseudo_pop.html
+++ b/docs/reference/check_args_compile_pseudo_pop.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/check_args_estimate_gps.html b/docs/reference/check_args_estimate_gps.html
index 817edca4..1be74656 100644
--- a/docs/reference/check_args_estimate_gps.html
+++ b/docs/reference/check_args_estimate_gps.html
@@ -12,7 +12,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/check_args_use_cov_transformers.html b/docs/reference/check_args_use_cov_transformers.html
index 9beffe79..61e55d1d 100644
--- a/docs/reference/check_args_use_cov_transformers.html
+++ b/docs/reference/check_args_use_cov_transformers.html
@@ -12,7 +12,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/check_covar_balance.html b/docs/reference/check_covar_balance.html
index 4c732221..028895af 100644
--- a/docs/reference/check_covar_balance.html
+++ b/docs/reference/check_covar_balance.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/check_kolmogorov_smirnov.html b/docs/reference/check_kolmogorov_smirnov.html
index 9fcf75b9..3eea0bfe 100644
--- a/docs/reference/check_kolmogorov_smirnov.html
+++ b/docs/reference/check_kolmogorov_smirnov.html
@@ -12,7 +12,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/compile_pseudo_pop.html b/docs/reference/compile_pseudo_pop.html
index 05985cb1..39cfbd95 100644
--- a/docs/reference/compile_pseudo_pop.html
+++ b/docs/reference/compile_pseudo_pop.html
@@ -12,7 +12,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/compute_closest_wgps.html b/docs/reference/compute_closest_wgps.html
index f4e5e70c..1fc0fd19 100644
--- a/docs/reference/compute_closest_wgps.html
+++ b/docs/reference/compute_closest_wgps.html
@@ -12,7 +12,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/compute_density.html b/docs/reference/compute_density.html
index d0ad91b6..973c8fff 100644
--- a/docs/reference/compute_density.html
+++ b/docs/reference/compute_density.html
@@ -12,7 +12,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/compute_min_max.html b/docs/reference/compute_min_max.html
index 0212daa1..9c83d384 100644
--- a/docs/reference/compute_min_max.html
+++ b/docs/reference/compute_min_max.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/compute_outer.html b/docs/reference/compute_outer.html
index 22c74eb4..fcfea015 100644
--- a/docs/reference/compute_outer.html
+++ b/docs/reference/compute_outer.html
@@ -14,7 +14,7 @@
CausalGPS
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+ 0.4.1.9000
diff --git a/docs/reference/compute_resid.html b/docs/reference/compute_resid.html
index fd0bcce1..37636fa7 100644
--- a/docs/reference/compute_resid.html
+++ b/docs/reference/compute_resid.html
@@ -10,7 +10,7 @@
CausalGPS
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+ 0.4.1.9000
diff --git a/docs/reference/compute_risk.html b/docs/reference/compute_risk.html
index de18c988..1ba6931c 100644
--- a/docs/reference/compute_risk.html
+++ b/docs/reference/compute_risk.html
@@ -12,7 +12,7 @@
CausalGPS
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+ 0.4.1.9000
diff --git a/docs/reference/create_matching.html b/docs/reference/create_matching.html
index ec543a55..65389403 100644
--- a/docs/reference/create_matching.html
+++ b/docs/reference/create_matching.html
@@ -10,7 +10,7 @@
CausalGPS
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diff --git a/docs/reference/create_weighting.html b/docs/reference/create_weighting.html
index 19a8442a..1f230d50 100644
--- a/docs/reference/create_weighting.html
+++ b/docs/reference/create_weighting.html
@@ -10,7 +10,7 @@
CausalGPS
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+ 0.4.1.9000
diff --git a/docs/reference/estimate_gps.html b/docs/reference/estimate_gps.html
index 1c094adf..06834103 100644
--- a/docs/reference/estimate_gps.html
+++ b/docs/reference/estimate_gps.html
@@ -12,7 +12,7 @@
CausalGPS
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+ 0.4.1.9000
diff --git a/docs/reference/estimate_hat_vals.html b/docs/reference/estimate_hat_vals.html
index ad900dda..28117b91 100644
--- a/docs/reference/estimate_hat_vals.html
+++ b/docs/reference/estimate_hat_vals.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/estimate_npmetric_erf.html b/docs/reference/estimate_npmetric_erf.html
index cbcdb1dc..21415a8a 100644
--- a/docs/reference/estimate_npmetric_erf.html
+++ b/docs/reference/estimate_npmetric_erf.html
@@ -12,7 +12,7 @@
CausalGPS
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+ 0.4.1.9000
diff --git a/docs/reference/estimate_pmetric_erf.html b/docs/reference/estimate_pmetric_erf.html
index 2ee35e34..81fbc1b2 100644
--- a/docs/reference/estimate_pmetric_erf.html
+++ b/docs/reference/estimate_pmetric_erf.html
@@ -12,7 +12,7 @@
CausalGPS
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diff --git a/docs/reference/estimate_semipmetric_erf.html b/docs/reference/estimate_semipmetric_erf.html
index d03d588a..5b203202 100644
--- a/docs/reference/estimate_semipmetric_erf.html
+++ b/docs/reference/estimate_semipmetric_erf.html
@@ -12,7 +12,7 @@
CausalGPS
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diff --git a/docs/reference/gen_wrap_sl_lib.html b/docs/reference/gen_wrap_sl_lib.html
index e9575ca0..32407e6c 100644
--- a/docs/reference/gen_wrap_sl_lib.html
+++ b/docs/reference/gen_wrap_sl_lib.html
@@ -12,7 +12,7 @@
CausalGPS
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+ 0.4.1.9000
diff --git a/docs/reference/generate_kernel.html b/docs/reference/generate_kernel.html
index 067c77e8..b2fabd99 100644
--- a/docs/reference/generate_kernel.html
+++ b/docs/reference/generate_kernel.html
@@ -10,7 +10,7 @@
CausalGPS
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diff --git a/docs/reference/generate_pseudo_pop.html b/docs/reference/generate_pseudo_pop.html
index 8b2583ed..12aa6b45 100644
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@@ -18,7 +18,7 @@
CausalGPS
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diff --git a/docs/reference/generate_syn_data.html b/docs/reference/generate_syn_data.html
index b577749c..2a876690 100644
--- a/docs/reference/generate_syn_data.html
+++ b/docs/reference/generate_syn_data.html
@@ -10,7 +10,7 @@
CausalGPS
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diff --git a/docs/reference/get_logger.html b/docs/reference/get_logger.html
index e7679e33..139bf622 100644
--- a/docs/reference/get_logger.html
+++ b/docs/reference/get_logger.html
@@ -10,7 +10,7 @@
CausalGPS
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diff --git a/docs/reference/index.html b/docs/reference/index.html
index 5ec01648..3e2a8546 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -10,7 +10,7 @@
CausalGPS
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diff --git a/docs/reference/log_system_info.html b/docs/reference/log_system_info.html
index 7dffd226..258740cb 100644
--- a/docs/reference/log_system_info.html
+++ b/docs/reference/log_system_info.html
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CausalGPS
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diff --git a/docs/reference/matching_fn.html b/docs/reference/matching_fn.html
index 94a98640..556dde94 100644
--- a/docs/reference/matching_fn.html
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CausalGPS
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diff --git a/docs/reference/plot.gpsm_erf.html b/docs/reference/plot.gpsm_erf.html
index e210ec84..634ef0af 100644
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CausalGPS
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diff --git a/docs/reference/plot.gpsm_pspop.html b/docs/reference/plot.gpsm_pspop.html
index 1ec1bfe8..3bfeef21 100644
--- a/docs/reference/plot.gpsm_pspop.html
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@@ -10,7 +10,7 @@
CausalGPS
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+ 0.4.1.9000
diff --git a/docs/reference/preprocess_data.html b/docs/reference/preprocess_data.html
index 105b8285..3fc6213c 100644
--- a/docs/reference/preprocess_data.html
+++ b/docs/reference/preprocess_data.html
@@ -10,7 +10,7 @@
CausalGPS
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+ 0.4.1.9000
diff --git a/docs/reference/print.gpsm_erf.html b/docs/reference/print.gpsm_erf.html
index 5f0e5c00..dc57624b 100644
--- a/docs/reference/print.gpsm_erf.html
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@@ -10,7 +10,7 @@
CausalGPS
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diff --git a/docs/reference/print.gpsm_pspop.html b/docs/reference/print.gpsm_pspop.html
index fa9204c7..e7341503 100644
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CausalGPS
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diff --git a/docs/reference/set_logger.html b/docs/reference/set_logger.html
index e8a34489..d049e918 100644
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CausalGPS
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diff --git a/docs/reference/smooth_erf.html b/docs/reference/smooth_erf.html
index aa76184b..f2912ecc 100644
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CausalGPS
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index 083e7e71..86c16d6e 100644
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CausalGPS
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diff --git a/docs/reference/smooth_erf_locpol.html b/docs/reference/smooth_erf_locpol.html
index cb9222b8..045b1dda 100644
--- a/docs/reference/smooth_erf_locpol.html
+++ b/docs/reference/smooth_erf_locpol.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/summary.gpsm_erf.html b/docs/reference/summary.gpsm_erf.html
index 92a2f460..c9e57d3f 100644
--- a/docs/reference/summary.gpsm_erf.html
+++ b/docs/reference/summary.gpsm_erf.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/summary.gpsm_pspop.html b/docs/reference/summary.gpsm_pspop.html
index a1550850..d3b0e638 100644
--- a/docs/reference/summary.gpsm_pspop.html
+++ b/docs/reference/summary.gpsm_pspop.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/synthetic_us_2010.html b/docs/reference/synthetic_us_2010.html
index 323080ec..b18380f6 100644
--- a/docs/reference/synthetic_us_2010.html
+++ b/docs/reference/synthetic_us_2010.html
@@ -76,7 +76,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/train_it.html b/docs/reference/train_it.html
index 62bd89c7..12e22a21 100644
--- a/docs/reference/train_it.html
+++ b/docs/reference/train_it.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/transform_it.html b/docs/reference/transform_it.html
index 0669b353..a9986e00 100644
--- a/docs/reference/transform_it.html
+++ b/docs/reference/transform_it.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/trim_gps.html b/docs/reference/trim_gps.html
index ccea0f17..41f71848 100644
--- a/docs/reference/trim_gps.html
+++ b/docs/reference/trim_gps.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000
diff --git a/docs/reference/w_fun.html b/docs/reference/w_fun.html
index c3addabf..d8810af9 100644
--- a/docs/reference/w_fun.html
+++ b/docs/reference/w_fun.html
@@ -10,7 +10,7 @@
CausalGPS
- 0.4.1
+ 0.4.1.9000